PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build
PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions
| Draft as of 2026-09-28 |
{
"resourceType" : "ConceptMap",
"id" : "dm-instrumental-investigation-to-omop",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap dm-instrumental-investigation-to-omop</b></p><a name=\"dm-instrumental-investigation-to-omop\"> </a><a name=\"hcdm-instrumental-investigation-to-omop\"> </a><p>This mapping does not specify any particular context of use.</p><br/><p>Mapping from <a href=\"CodeSystem-dm-variable-cs.html\">PROTECT-CHILD Data Model Variables</a> to <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\">OHDSI Standardized Vocabularies</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td><td><b>Comment</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-dm-variable-cs.html\" title=\"https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs\">PROTECT-CHILD Data Model Variables</a></td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html\" title=\"https://fhir-terminology.ohdsi.org\">OHDSI Standardized Vocabularies</a></td><td/></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">instrumental_investigation.instrumental_investigation</td><td style=\"border-left-width: 0px; border-bottom-style: none\">instrumental_investigation.instrumental_investigation</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4061009</td><td style=\"border-left-width: 0px\">CT of abdomen</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4083230</td><td style=\"border-left-width: 0px\">MRI of abdomen</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4299523</td><td style=\"border-left-width: 0px\">Angiography</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4303663</td><td style=\"border-left-width: 0px\">CT angiography with contrast</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">37311324</td><td style=\"border-left-width: 0px\">MRI of brain</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4329502</td><td style=\"border-left-width: 0px\">SPECT of kidney using dimercaptosuccinic acid</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">37152490</td><td style=\"border-left-width: 0px\">Doppler ultrasonography</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4346528</td><td style=\"border-left-width: 0px\">Renal isotope studies</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4230911</td><td style=\"border-left-width: 0px\">Echocardiography</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4163951</td><td style=\"border-left-width: 0px\">Electrocardiographic procedure</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4181917</td><td style=\"border-left-width: 0px\">Electroencephalogram</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4217034</td><td style=\"border-left-width: 0px\">Kidney biopsy</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4167052</td><td style=\"border-left-width: 0px\">Doppler ultrasonography of kidney</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4147846</td><td style=\"border-left-width: 0px\">Echography of kidney</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4314001</td><td style=\"border-left-width: 0px\">Biopsy of liver</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4160708</td><td style=\"border-left-width: 0px\">Doppler ultrasonography of liver and portal system</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4346948</td><td style=\"border-left-width: 0px\">Tc99m-MAG3 renogram</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4194588</td><td style=\"border-left-width: 0px\">Magnetic resonance cholangiopancreatography</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4168020</td><td style=\"border-left-width: 0px\">Fluoroscopic micturating cystourethrography</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4305790</td><td style=\"border-left-width: 0px\">Positron emission tomography</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4060500</td><td style=\"border-left-width: 0px\">CAT scan - whole body</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4037672</td><td style=\"border-left-width: 0px\">Ultrasonography</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">40479203</td><td style=\"border-left-width: 0px\">Ultrasound elastography of liver</td><td>OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">instrumental_investigation.result</td><td style=\"border-left-width: 0px; border-bottom-style: none\">instrumental_investigation.result</td><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">4085245</td><td style=\"border-left-width: 0px\">No abnormality detected</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#narrower\" title=\"narrower\">narrower</a></td><td style=\"border-right-width: 0px\">40484102</td><td style=\"border-left-width: 0px\">Abnormal finding on evaluation procedure</td><td>OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED.</td></tr></table></div>"
},
"url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-instrumental-investigation-to-omop",
"version" : "0.1.0-ci-build",
"name" : "DmInstrumentalInvestigationToOmop",
"title" : "DM instrumental_investigation → OMOP",
"status" : "draft",
"experimental" : false,
"date" : "2026-09-28T06:51:47+00:00",
"publisher" : "Protect Child",
"contact" : [
{
"name" : "Protect Child",
"telecom" : [
{
"system" : "url",
"value" : "https://protect-child.eu/"
}
]
}
],
"description" : "The OMOP concepts for each column of the DMv1.2 instrumental_investigation table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary).",
"group" : [
{
"source" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs",
"target" : "https://fhir-terminology.ohdsi.org",
"element" : [
{
"code" : "instrumental_investigation.instrumental_investigation",
"target" : [
{
"code" : "4061009",
"display" : "CT of abdomen",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4083230",
"display" : "MRI of abdomen",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4299523",
"display" : "Angiography",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4303663",
"display" : "CT angiography with contrast",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "37311324",
"display" : "MRI of brain",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4329502",
"display" : "SPECT of kidney using dimercaptosuccinic acid",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "37152490",
"display" : "Doppler ultrasonography",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4346528",
"display" : "Renal isotope studies",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4230911",
"display" : "Echocardiography",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4163951",
"display" : "Electrocardiographic procedure",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4181917",
"display" : "Electroencephalogram",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4217034",
"display" : "Kidney biopsy",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4167052",
"display" : "Doppler ultrasonography of kidney",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4147846",
"display" : "Echography of kidney",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4314001",
"display" : "Biopsy of liver",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4160708",
"display" : "Doppler ultrasonography of liver and portal system",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4346948",
"display" : "Tc99m-MAG3 renogram",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4194588",
"display" : "Magnetic resonance cholangiopancreatography",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4168020",
"display" : "Fluoroscopic micturating cystourethrography",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4305790",
"display" : "Positron emission tomography",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4060500",
"display" : "CAT scan - whole body",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "4037672",
"display" : "Ultrasonography",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
},
{
"code" : "40479203",
"display" : "Ultrasound elastography of liver",
"equivalence" : "narrower",
"comment" : "OMOP PROCEDURE_OCCURRENCE.procedure_concept_id; vocabulary SNOMED."
}
]
},
{
"code" : "instrumental_investigation.result",
"target" : [
{
"code" : "4085245",
"display" : "No abnormality detected",
"equivalence" : "narrower",
"comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
},
{
"code" : "40484102",
"display" : "Abnormal finding on evaluation procedure",
"equivalence" : "narrower",
"comment" : "OMOP CONDITION_OCCURRENCE.condition_concept_id; vocabulary SNOMED."
}
]
}
]
}
]
}