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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

: DM bio_sample → OMOP - XML Representation

Draft as of 2026-09-28

Raw xml | Download


<ConceptMap xmlns="http://hl7.org/fhir">
  <id value="dm-bio-sample-to-omop"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ConceptMap dm-bio-sample-to-omop</b></p><a name="dm-bio-sample-to-omop"> </a><a name="hcdm-bio-sample-to-omop"> </a><p>This mapping does not specify any particular context of use.</p><br/><p>Mapping from <a href="CodeSystem-dm-variable-cs.html">PROTECT-CHILD Data Model Variables</a> to <a href="http://terminology.hl7.org/6.3.0/CodeSystem-OMOP.html">OHDSI Standardized Vocabularies</a></p><table class="grid"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>bio_sample.collection_date</td><td><a href="http://hl7.org/fhir/R4/codesystem-concept-map-equivalence.html#concept-map-equivalence-equivalent" title="equivalent">is equivalent to</a></td><td>4048506 (Specimen)</td><td>OMOP SPECIMEN.specimen_concept_id; vocabulary SNOMED.</td></tr></table></div>
  </text>
  <url
       value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/ConceptMap/dm-bio-sample-to-omop"/>
  <version value="0.1.0-ci-build"/>
  <name value="DmBioSampleToOmop"/>
  <title value="DM bio_sample → OMOP"/>
  <status value="draft"/>
  <experimental value="false"/>
  <date value="2026-09-28T06:51:47+00:00"/>
  <publisher value="Protect Child"/>
  <contact>
    <name value="Protect Child"/>
    <telecom>
      <system value="url"/>
      <value value="https://protect-child.eu/"/>
    </telecom>
  </contact>
  <description
               value="The OMOP concepts for each column of the DMv1.2 bio_sample table, from the DM → FHIR → OMOP crosswalk. Each target's comment names the OMOP CDM field it fills. `equivalent`: the column's own concept; `narrower`: one of several concepts the column's values map to; `relatedto`: a value, unit or qualifier concept. Concept IDs of 2000000000 and above are PROTECT-CHILD custom concepts (CodeSystem ProtectChildOmopVocabulary)."/>
  <group>
    <source
            value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/dm-variable-cs"/>
    <target value="https://fhir-terminology.ohdsi.org"/>
    <element>
      <code value="bio_sample.collection_date"/>
      <target>
        <code value="4048506"/>
        <display value="Specimen"/>
        <equivalence value="equivalent"/>
        <comment
                 value="OMOP SPECIMEN.specimen_concept_id; vocabulary SNOMED."/>
      </target>
    </element>
  </group>
</ConceptMap>