Genomics Reporting Implementation Guide
3.0.0 - STU3
Genomics Reporting Implementation Guide
3.0.0 - STU3
Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
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<type value="transaction"/>
<entry>
<fullUrl value="urn:uuid:13f34265-335c-4853-bc38-0815315edafa"/>
<resource>
<Patient>
<id value="CG-IG-HLA-FullBundle-01-1"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Patient_CG-IG-HLA-FullBundle-01-1"> </a><p class="res-header-id"><b>Generated Narrative: Patient CG-IG-HLA-FullBundle-01-1</b></p><a name="CG-IG-HLA-FullBundle-01-1"> </a><a name="hcCG-IG-HLA-FullBundle-01-1"> </a><a name="CG-IG-HLA-FullBundle-01-1-en-US"> </a><p style="border: 1px #661aff solid; background-color: #e6e6ff; padding: 10px;">John Storm(official) Male, DoB: 1986-12-31 ( Donor Registration Number (use: usual, period: 2012-11-10 --> (ongoing)))</p><hr/></div>
</text>
<identifier>
<use value="usual"/>
<type>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0203"/>
<code value="DR"/>
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<system value="urn:oid:0.0.0.0.0.0.0"/>
<value value="12345"/>
<period>
<start value="2012-11-10"/>
</period>
<assigner>
<display value="aDonorRegistry"/>
</assigner>
</identifier>
<name>
<use value="official"/>
<text value="John Storm"/>
<family value="Storm"/>
<given value="John"/>
</name>
<name>
<use value="nickname"/>
<text value="Johnny Storm"/>
<family value="Storm"/>
<given value="Johnny"/>
</name>
<name>
<use value="nickname"/>
<text value="The Human Torch"/>
</name>
<gender value="male"/>
<birthDate value="1986-12-31"/>
</Patient>
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<request>
<method value="POST"/>
<url value="Patient"/>
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<entry>
<fullUrl value="urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"/>
<resource>
<Specimen>
<id value="CG-IG-HLA-FullBundle-01-2"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Specimen_CG-IG-HLA-FullBundle-01-2"> </a><p class="res-header-id"><b>Generated Narrative: Specimen CG-IG-HLA-FullBundle-01-2</b></p><a name="CG-IG-HLA-FullBundle-01-2"> </a><a name="hcCG-IG-HLA-FullBundle-01-2"> </a><a name="CG-IG-HLA-FullBundle-01-2-en-US"> </a><p><b>identifier</b>: <code>http://myorgsurl.com</code>/123</p><p><b>accessionIdentifier</b>: <code>http://mylabsurl.com</code>/456</p><p><b>type</b>: <span title="Codes:{http://snomed.info/sct 122555007}">Venous blood specimen</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p></div>
</text>
<identifier>
<system value="http://myorgsurl.com"/>
<value value="123"/>
</identifier>
<accessionIdentifier>
<system value="http://mylabsurl.com"/>
<value value="456"/>
</accessionIdentifier>
<type>
<coding>
<system value="http://snomed.info/sct"/>
<code value="122555007"/>
<display value="Venous blood specimen"/>
</coding>
</type>
<subject>
<reference value="urn:uuid:13f34265-335c-4853-bc38-0815315edafa"/>
<type value="Patient"/>
<display value="John Storm"/>
</subject>
</Specimen>
</resource>
<request>
<method value="POST"/>
<url value="Specimen"/>
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</entry>
<entry>
<fullUrl value="urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950"/>
<resource>
<Organization>
<id value="CG-IG-HLA-FullBundle-01-3"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Organization_CG-IG-HLA-FullBundle-01-3"> </a><p class="res-header-id"><b>Generated Narrative: Organization CG-IG-HLA-FullBundle-01-3</b></p><a name="CG-IG-HLA-FullBundle-01-3"> </a><a name="hcCG-IG-HLA-FullBundle-01-3"> </a><a name="CG-IG-HLA-FullBundle-01-3-en-US"> </a><p><b>name</b>: aTypingLab Inc</p><p><b>alias</b>: aTL</p><p><b>telecom</b>: ph: 1-800-555-1234(Work)</p><p><b>address</b>: 123 Main St, Sometown, ND 99999(work)</p></div>
</text>
<name value="aTypingLab Inc"/>
<alias value="aTL"/>
<telecom>
<system value="phone"/>
<value value="1-800-555-1234"/>
<use value="work"/>
<rank value="1"/>
</telecom>
<address>
<use value="work"/>
<type value="both"/>
<text value="123 Main St, Sometown, ND 99999"/>
<line value="123 Main St"/>
<city value="Sometown"/>
<state value="ND"/>
<postalCode value="99999"/>
<country value="USA"/>
</address>
</Organization>
</resource>
<request>
<method value="POST"/>
<url value="Organization"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:00ef18ad-ed04-4b2c-81ee-b69bb243f0d5"/>
<resource>
<Organization>
<id value="CG-IG-HLA-FullBundle-01-4"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Organization_CG-IG-HLA-FullBundle-01-4"> </a><p class="res-header-id"><b>Generated Narrative: Organization CG-IG-HLA-FullBundle-01-4</b></p><a name="CG-IG-HLA-FullBundle-01-4"> </a><a name="hcCG-IG-HLA-FullBundle-01-4"> </a><a name="CG-IG-HLA-FullBundle-01-4-en-US"> </a><p><b>name</b>: aDonorRegistry</p><p><b>alias</b>: ADR</p><p><b>telecom</b>: ph: 1-800-555-6789(Work)</p><p><b>address</b>: 456 Main St, Anytown ND, 00000(work)</p></div>
</text>
<name value="aDonorRegistry"/>
<alias value="ADR"/>
<telecom>
<system value="phone"/>
<value value="1-800-555-6789"/>
<use value="work"/>
<rank value="1"/>
</telecom>
<address>
<use value="work"/>
<type value="both"/>
<text value="456 Main St, Anytown ND, 00000"/>
<line value="456 Main St"/>
<city value="Anytown"/>
<state value="ND"/>
<postalCode value="00000"/>
<country value="USA"/>
</address>
</Organization>
</resource>
<request>
<method value="POST"/>
<url value="Organization"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:99309303-045e-4cf4-90d7-250d7a7476ea"/>
<resource>
<ServiceRequest>
<id value="CG-IG-HLA-FullBundle-01-5"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="ServiceRequest_CG-IG-HLA-FullBundle-01-5"> </a><p class="res-header-id"><b>Generated Narrative: ServiceRequest CG-IG-HLA-FullBundle-01-5</b></p><a name="CG-IG-HLA-FullBundle-01-5"> </a><a name="hcCG-IG-HLA-FullBundle-01-5"> </a><a name="CG-IG-HLA-FullBundle-01-5-en-US"> </a><p><b>status</b>: Completed</p><p><b>intent</b>: Order</p><p><b>code</b>: <span title="Codes:{http://loinc.org 13303-3}">HLA-A+B+C (class I) [Type]</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p><p><b>authoredOn</b>: 2016-11-15</p><p><b>requester</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-00ef18ad-ed04-4b2c-81ee-b69bb243f0d5">aDonorRegistry</a></p><p><b>performer</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab, Inc</a></p><p><b>reasonCode</b>: <span title="Codes:">tissue typing for donor registry</span></p></div>
</text>
<status value="completed"/>
<intent value="order"/>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="13303-3"/>
<display value="HLA-A+B+C (class I) [Type]"/>
</coding>
</code>
<subject>
<reference value="urn:uuid:13f34265-335c-4853-bc38-0815315edafa"/>
<type value="Patient"/>
<display value="John Storm"/>
</subject>
<authoredOn value="2016-11-15"/>
<requester>
<reference value="urn:uuid:00ef18ad-ed04-4b2c-81ee-b69bb243f0d5"/>
<type value="Organization"/>
<display value="aDonorRegistry"/>
</requester>
<performer>
<reference value="urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950"/>
<type value="Organization"/>
<display value="aTypingLab, Inc"/>
</performer>
<reasonCode>
<text value="tissue typing for donor registry"/>
</reasonCode>
</ServiceRequest>
</resource>
<request>
<method value="POST"/>
<url value="ServiceRequest"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:8200dab6-18a2-4550-b913-a7db480c0804"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-6"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-6"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-6</b></p><a name="CG-IG-HLA-FullBundle-01-6"> </a><a name="hcCG-IG-HLA-FullBundle-01-6"> </a><a name="CG-IG-HLA-FullBundle-01-6-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00001}">HLA-A*01:01:01:01</span></td><td>503</td><td>773</td></tr></table><p><b>observedSeq</b>: GCTCCCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAAGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCCACTCACAGACTGACCGAGCGAACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA00001"/>
</coding>
<text value="HLA-A*01:01:01:01"/>
</referenceSeqId>
<windowStart value="503"/>
<windowEnd value="773"/>
</referenceSeq>
<observedSeq
value="GCTCCCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCCGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAAGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCCACTCACAGACTGACCGAGCGAACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACG"/>
</MolecularSequence>
</resource>
<request>
<method value="POST"/>
<url value="MolecularSequence"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:7c393185-f15c-45bc-a714-c0fdbea32675"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-7"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-7"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-7</b></p><a name="CG-IG-HLA-FullBundle-01-7"> </a><a name="hcCG-IG-HLA-FullBundle-01-7"> </a><a name="CG-IG-HLA-FullBundle-01-7-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00001}">HLA-A*01:01:01:01</span></td><td>1014</td><td>1290</td></tr></table><p><b>observedSeq</b>: GTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGCCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGTCCATGCGGCGGAGCAGCGGAGAGTCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA00001"/>
</coding>
<text value="HLA-A*01:01:01:01"/>
</referenceSeqId>
<windowStart value="1014"/>
<windowEnd value="1290"/>
</referenceSeq>
<observedSeq
value="GTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGCCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGTCCATGCGGCGGAGCAGCGGAGAGTCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGG"/>
</MolecularSequence>
</resource>
<request>
<method value="POST"/>
<url value="MolecularSequence"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:65c85f14-c3a0-4b72-818f-820e04fcc621"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-8"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-8"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-8</b></p><a name="CG-IG-HLA-FullBundle-01-8"> </a><a name="hcCG-IG-HLA-FullBundle-01-8"> </a><a name="CG-IG-HLA-FullBundle-01-8-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00002}">HLA-A*01:02</span></td><td>503</td><td>773</td></tr></table><p><b>observedSeq</b>: GCTCCCACTCCATGAGGTATTTCTCCACATCCGTGTCCCGGCCCGGCAGTGGAGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAAGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCCACTCACAGACTGACCGAGCGAACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA00002"/>
</coding>
<text value="HLA-A*01:02"/>
</referenceSeqId>
<windowStart value="503"/>
<windowEnd value="773"/>
</referenceSeq>
<observedSeq
value="GCTCCCACTCCATGAGGTATTTCTCCACATCCGTGTCCCGGCCCGGCAGTGGAGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAAGATGGAGCCGCGGGCGCCGTGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCAGGAGACACGGAATATGAAGGCCCACTCACAGACTGACCGAGCGAACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGACG"/>
</MolecularSequence>
</resource>
<request>
<method value="POST"/>
<url value="MolecularSequence"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:fbba9fe7-0ece-4ec1-9233-a437a8d242a0"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-9"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-9"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-9</b></p><a name="CG-IG-HLA-FullBundle-01-9"> </a><a name="hcCG-IG-HLA-FullBundle-01-9"> </a><a name="CG-IG-HLA-FullBundle-01-9-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00002}">HLA-A*01:02</span></td><td>1014</td><td>1290</td></tr></table><p><b>observedSeq</b>: GTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGCCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGTCCATGCGGCGGAGCAGCGGAGAGTCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA00002"/>
</coding>
<text value="HLA-A*01:02"/>
</referenceSeqId>
<windowStart value="1014"/>
<windowEnd value="1290"/>
</referenceSeq>
<observedSeq
value="GTTCTCACACCATCCAGATAATGTATGGCTGCGACGTGGGGCCGGACGGGCGCTTCCTCCGCGGGTACCGGCAGGACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCTTGGACCGCGGCGGACATGGCAGCTCAGATCACCAAGCGCAAGTGGGAGGCGGTCCATGCGGCGGAGCAGCGGAGAGTCTACCTGGAGGGCCGGTGCGTGGACGGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCACGG"/>
</MolecularSequence>
</resource>
<request>
<method value="POST"/>
<url value="MolecularSequence"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:b7765bbf-df40-486a-9f2f-404309643de6"/>
<resource>
<Observation>
<id value="CG-IG-HLA-FullBundle-01-10"/>
<meta>
<profile
value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"/>
</meta>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_CG-IG-HLA-FullBundle-01-10"> </a><p class="res-header-id"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-10</b></p><a name="CG-IG-HLA-FullBundle-01-10"> </a><a name="hcCG-IG-HLA-FullBundle-01-10"> </a><a name="CG-IG-HLA-FullBundle-01-10-en-US"> </a><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 84414-2}">Haplotype name</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab, Inc</a></p><p><b>value</b>: <span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-A*01:01:01G}">HLA-A*01:01:01G</span></p><p><b>method</b>: <span title="Codes:{http://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-8200dab6-18a2-4550-b913-a7db480c0804">HLA-A*01:01:01:01, exon 2</a></li><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-7c393185-f15c-45bc-a714-c0fdbea32675">HLA-A*01:01:01:01, exon 3</a></li></ul><h3>Components</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes:{http://www.genenames.org HGNC:4931}">HLA-A</span></td></tr></table></div>
</text>
<status value="final"/>
<category>
<coding>
<system
value="http://terminology.hl7.org/CodeSystem/observation-category"/>
<code value="laboratory"/>
</coding>
</category>
<category>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
<code value="GE"/>
</coding>
</category>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="84414-2"/>
<display value="Haplotype name"/>
</coding>
</code>
<subject>
<reference value="urn:uuid:13f34265-335c-4853-bc38-0815315edafa"/>
<type value="Patient"/>
<display value="John Storm"/>
</subject>
<effectiveDateTime value="2016-12-15"/>
<performer>
<reference value="urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950"/>
<display value="aTypingLab, Inc"/>
</performer>
<valueCodeableConcept>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA-A*01:01:01G"/>
<display value="HLA-A*01:01:01G"/>
</coding>
</valueCodeableConcept>
<method>
<coding>
<system value="http://www.ncbi.nlm.nih.gov/gtr"/>
<code value="GTR000000000.0"/>
</coding>
<text value="NGS based Class I HLA-A, -B, -C genotyping"/>
</method>
<specimen>
<reference value="urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"/>
<display value="buccal swab from John Storm"/>
</specimen>
<derivedFrom>
<reference value="urn:uuid:8200dab6-18a2-4550-b913-a7db480c0804"/>
<type value="MolecularSequence"/>
<display value="HLA-A*01:01:01:01, exon 2"/>
</derivedFrom>
<derivedFrom>
<reference value="urn:uuid:7c393185-f15c-45bc-a714-c0fdbea32675"/>
<type value="MolecularSequence"/>
<display value="HLA-A*01:01:01:01, exon 3"/>
</derivedFrom>
<component>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="48018-6"/>
<display value="Gene studied [ID]"/>
</coding>
</code>
<valueCodeableConcept>
<coding>
<system value="http://www.genenames.org"/>
<code value="HGNC:4931"/>
<display value="HLA-A"/>
</coding>
</valueCodeableConcept>
</component>
</Observation>
</resource>
<request>
<method value="POST"/>
<url value="Observation"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:d98d92a7-0e86-4ae5-b036-b7e1bba6ec32"/>
<resource>
<Observation>
<id value="CG-IG-HLA-FullBundle-01-11"/>
<meta>
<profile
value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"/>
</meta>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_CG-IG-HLA-FullBundle-01-11"> </a><p class="res-header-id"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-11</b></p><a name="CG-IG-HLA-FullBundle-01-11"> </a><a name="hcCG-IG-HLA-FullBundle-01-11"> </a><a name="CG-IG-HLA-FullBundle-01-11-en-US"> </a><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 84414-2}">Haplotype name</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab, Inc</a></p><p><b>value</b>: <span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-A*01:02}">HLA-A*01:02</span></p><p><b>method</b>: <span title="Codes:{http://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-65c85f14-c3a0-4b72-818f-820e04fcc621">HLA-A*01:02, exon 2</a></li><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-fbba9fe7-0ece-4ec1-9233-a437a8d242a0">HLA-A*01:02, exon 3</a></li></ul><h3>Components</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes:{http://www.genenames.org HGNC:4931}">HLA-A</span></td></tr></table></div>
</text>
<status value="final"/>
<category>
<coding>
<system
value="http://terminology.hl7.org/CodeSystem/observation-category"/>
<code value="laboratory"/>
</coding>
</category>
<category>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
<code value="GE"/>
</coding>
</category>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="84414-2"/>
<display value="Haplotype name"/>
</coding>
</code>
<subject>
<reference value="urn:uuid:13f34265-335c-4853-bc38-0815315edafa"/>
<type value="Patient"/>
<display value="John Storm"/>
</subject>
<effectiveDateTime value="2016-12-15"/>
<performer>
<reference value="urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950"/>
<display value="aTypingLab, Inc"/>
</performer>
<valueCodeableConcept>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA-A*01:02"/>
<display value="HLA-A*01:02"/>
</coding>
</valueCodeableConcept>
<method>
<coding>
<system value="http://www.ncbi.nlm.nih.gov/gtr"/>
<code value="GTR000000000.0"/>
</coding>
<text value="NGS based Class I HLA-A, -B, -C genotyping"/>
</method>
<specimen>
<reference value="urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"/>
<display value="buccal swab from John Storm"/>
</specimen>
<derivedFrom>
<reference value="urn:uuid:65c85f14-c3a0-4b72-818f-820e04fcc621"/>
<type value="MolecularSequence"/>
<display value="HLA-A*01:02, exon 2"/>
</derivedFrom>
<derivedFrom>
<reference value="urn:uuid:fbba9fe7-0ece-4ec1-9233-a437a8d242a0"/>
<type value="MolecularSequence"/>
<display value="HLA-A*01:02, exon 3"/>
</derivedFrom>
<component>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="48018-6"/>
<display value="Gene studied [ID]"/>
</coding>
</code>
<valueCodeableConcept>
<coding>
<system value="http://www.genenames.org"/>
<code value="HGNC:4931"/>
<display value="HLA-A"/>
</coding>
</valueCodeableConcept>
</component>
</Observation>
</resource>
<request>
<method value="POST"/>
<url value="Observation"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:49a86246-4004-42eb-9bdc-f542f93f9228"/>
<resource>
<Observation>
<id value="CG-IG-HLA-FullBundle-01-12"/>
<meta>
<profile
value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype"/>
</meta>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_CG-IG-HLA-FullBundle-01-12"> </a><p class="res-header-id"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-12</b></p><a name="CG-IG-HLA-FullBundle-01-12"> </a><a name="hcCG-IG-HLA-FullBundle-01-12"> </a><a name="CG-IG-HLA-FullBundle-01-12-en-US"> </a><p><b>basedOn</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-99309303-045e-4cf4-90d7-250d7a7476ea">Class I HLA genotyping for John Storm</a></p><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 84413-4}">Genotype display name</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab, Inc</a></p><p><b>value</b>: <span title="Codes:{http://glstring.org hla#3.23.0#HLA-A:01:01G+HLA-A*01:02}">hla#3.23.0#HLA-A:01:01G+HLA-A*01:02</span></p><p><b>method</b>: <span title="Codes:{http://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-b7765bbf-df40-486a-9f2f-404309643de6">HLA-A*01:01:01G, exons 2 and 3</a></li><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-d98d92a7-0e86-4ae5-b036-b7e1bba6ec32">HLA-A*01:02, exons 2 and 3</a></li></ul><h3>Components</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes:{http://www.genenames.org HGNC:4931}">HLA-A</span></td></tr></table></div>
</text>
<basedOn>
<reference value="urn:uuid:99309303-045e-4cf4-90d7-250d7a7476ea"/>
<type value="ServiceRequest"/>
<display value="Class I HLA genotyping for John Storm"/>
</basedOn>
<status value="final"/>
<category>
<coding>
<system
value="http://terminology.hl7.org/CodeSystem/observation-category"/>
<code value="laboratory"/>
</coding>
</category>
<category>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
<code value="GE"/>
</coding>
</category>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="84413-4"/>
<display value="Genotype display name"/>
</coding>
</code>
<subject>
<reference value="urn:uuid:13f34265-335c-4853-bc38-0815315edafa"/>
<type value="Patient"/>
<display value="John Storm"/>
</subject>
<effectiveDateTime value="2016-12-15"/>
<performer>
<reference value="urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950"/>
<display value="aTypingLab, Inc"/>
</performer>
<valueCodeableConcept>
<coding>
<system value="http://glstring.org"/>
<version value="1.0"/>
<code value="hla#3.23.0#HLA-A:01:01G+HLA-A*01:02"/>
</coding>
</valueCodeableConcept>
<method>
<coding>
<system value="http://www.ncbi.nlm.nih.gov/gtr"/>
<code value="GTR000000000.0"/>
</coding>
<text value="NGS based Class I HLA-A, -B, -C genotyping"/>
</method>
<specimen>
<reference value="urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"/>
<display value="buccal swab from John Storm"/>
</specimen>
<derivedFrom>
<reference value="urn:uuid:b7765bbf-df40-486a-9f2f-404309643de6"/>
<type value="Observation"/>
<display value="HLA-A*01:01:01G, exons 2 and 3"/>
</derivedFrom>
<derivedFrom>
<reference value="urn:uuid:d98d92a7-0e86-4ae5-b036-b7e1bba6ec32"/>
<type value="Observation"/>
<display value="HLA-A*01:02, exons 2 and 3"/>
</derivedFrom>
<component>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="48018-6"/>
<display value="Gene studied [ID]"/>
</coding>
</code>
<valueCodeableConcept>
<coding>
<system value="http://www.genenames.org"/>
<code value="HGNC:4931"/>
<display value="HLA-A"/>
</coding>
</valueCodeableConcept>
</component>
</Observation>
</resource>
<request>
<method value="POST"/>
<url value="Observation"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:cbabf93e-1b4b-46f2-ba1e-d84862670670"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-13"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-13"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-13</b></p><a name="CG-IG-HLA-FullBundle-01-13"> </a><a name="hcCG-IG-HLA-FullBundle-01-13"> </a><a name="CG-IG-HLA-FullBundle-01-13-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00162}">HLA-B*15:01:01:01</span></td><td>486</td><td>756</td></tr></table><p><b>observedSeq</b>: GCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGGATGGCGCCCCGGGCGCCATGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGATCTCCAAGACCAACACACAGACTTACCGAGAGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA00162"/>
</coding>
<text value="HLA-B*15:01:01:01"/>
</referenceSeqId>
<windowStart value="486"/>
<windowEnd value="756"/>
</referenceSeq>
<observedSeq
value="GCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGGATGGCGCCCCGGGCGCCATGGATAGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGATCTCCAAGACCAACACACAGACTTACCGAGAGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG"/>
</MolecularSequence>
</resource>
<request>
<method value="POST"/>
<url value="MolecularSequence"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:c233ad3d-1572-48d6-93da-0a583535e138"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-14"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-14"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-14</b></p><a name="CG-IG-HLA-FullBundle-01-14"> </a><a name="hcCG-IG-HLA-FullBundle-01-14"> </a><a name="CG-IG-HLA-FullBundle-01-14-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00162}">HLA-B*15:01:01:01</span></td><td>1001</td><td>1277</td></tr></table><p><b>observedSeq</b>: GGTCTCACACCCTCCAGAGGATGTACGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGTGGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA00162"/>
</coding>
<text value="HLA-B*15:01:01:01"/>
</referenceSeqId>
<windowStart value="1001"/>
<windowEnd value="1277"/>
</referenceSeq>
<observedSeq
value="GGTCTCACACCCTCCAGAGGATGTACGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGTGGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG"/>
</MolecularSequence>
</resource>
<request>
<method value="POST"/>
<url value="MolecularSequence"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:05fa52d7-5c67-460a-8722-d3460b24d6fe"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-15"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-15"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-15</b></p><a name="CG-IG-HLA-FullBundle-01-15"> </a><a name="hcCG-IG-HLA-FullBundle-01-15"> </a><a name="CG-IG-HLA-FullBundle-01-15-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00381}">HLA-B*57:01:01</span></td><td>485</td><td>755</td></tr></table><p><b>observedSeq</b>: GCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGGATGGCGCCCCGGGCGCCATGGATAGAGCAGGAGGGGCCGGAGTATTGGGACGGGGAGACACGGAACATGAAGGCCTCCGCGCAGACTTACCGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACCAGAGCGAGGCCG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA00381"/>
</coding>
<text value="HLA-B*57:01:01"/>
</referenceSeqId>
<windowStart value="485"/>
<windowEnd value="755"/>
</referenceSeq>
<observedSeq
value="GCTCCCACTCCATGAGGTATTTCTACACCGCCATGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGGGCTACGTGGACGACACCCAGTTCGTGAGGTTCGACAGCGACGCCGCGAGTCCGAGGATGGCGCCCCGGGCGCCATGGATAGAGCAGGAGGGGCCGGAGTATTGGGACGGGGAGACACGGAACATGAAGGCCTCCGCGCAGACTTACCGAGAGAACCTGCGGATCGCGCTCCGCTACTACAACCAGAGCGAGGCCG"/>
</MolecularSequence>
</resource>
<request>
<method value="POST"/>
<url value="MolecularSequence"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:db69e549-6267-4777-b4b9-8813f3329309"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-16"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-16"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-16</b></p><a name="CG-IG-HLA-FullBundle-01-16"> </a><a name="hcCG-IG-HLA-FullBundle-01-16"> </a><a name="CG-IG-HLA-FullBundle-01-16-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00381}">HLA-B*57:01:01</span></td><td>1001</td><td>1277</td></tr></table><p><b>observedSeq</b>: GGTCTCACATCATCCAGGTGATGTATGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGTGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA00381"/>
</coding>
<text value="HLA-B*57:01:01"/>
</referenceSeqId>
<windowStart value="1001"/>
<windowEnd value="1277"/>
</referenceSeq>
<observedSeq
value="GGTCTCACATCATCCAGGTGATGTATGGCTGCGACGTGGGGCCGGACGGGCGCCTCCTCCGCGGGCATGACCAGTCCGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGAGCTCCTGGACCGCGGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGTGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG"/>
</MolecularSequence>
</resource>
<request>
<method value="POST"/>
<url value="MolecularSequence"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:e2092243-2970-49d2-a90f-b90d1d49715a"/>
<resource>
<Observation>
<id value="CG-IG-HLA-FullBundle-01-17"/>
<meta>
<profile
value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"/>
</meta>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_CG-IG-HLA-FullBundle-01-17"> </a><p class="res-header-id"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-17</b></p><a name="CG-IG-HLA-FullBundle-01-17"> </a><a name="hcCG-IG-HLA-FullBundle-01-17"> </a><a name="CG-IG-HLA-FullBundle-01-17-en-US"> </a><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 84414-2}">Haplotype name</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab, Inc</a></p><p><b>value</b>: <span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HGG00041}">HLA-B*15:01:01G</span></p><p><b>method</b>: <span title="Codes:{http://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-cbabf93e-1b4b-46f2-ba1e-d84862670670">HLA-B*15:01:01:01, exon 2</a></li><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-c233ad3d-1572-48d6-93da-0a583535e138">HLA-B*15:01:01:01, exon 3</a></li></ul><h3>Components</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes:{http://www.genenames.org HGNC:4932}">HLA-B</span></td></tr></table></div>
</text>
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<category>
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<system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
<code value="GE"/>
</coding>
</category>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="84414-2"/>
<display value="Haplotype name"/>
</coding>
</code>
<subject>
<reference value="urn:uuid:13f34265-335c-4853-bc38-0815315edafa"/>
<type value="Patient"/>
<display value="John Storm"/>
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<effectiveDateTime value="2016-12-15"/>
<performer>
<reference value="urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950"/>
<display value="aTypingLab, Inc"/>
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<valueCodeableConcept>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HGG00041"/>
<display value="HLA-B*15:01:01G"/>
</coding>
</valueCodeableConcept>
<method>
<coding>
<system value="http://www.ncbi.nlm.nih.gov/gtr"/>
<code value="GTR000000000.0"/>
</coding>
<text value="NGS based Class I HLA-A, -B, -C genotyping"/>
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<specimen>
<reference value="urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"/>
<display value="buccal swab from John Storm"/>
</specimen>
<derivedFrom>
<reference value="urn:uuid:cbabf93e-1b4b-46f2-ba1e-d84862670670"/>
<type value="MolecularSequence"/>
<display value="HLA-B*15:01:01:01, exon 2"/>
</derivedFrom>
<derivedFrom>
<reference value="urn:uuid:c233ad3d-1572-48d6-93da-0a583535e138"/>
<type value="MolecularSequence"/>
<display value="HLA-B*15:01:01:01, exon 3"/>
</derivedFrom>
<component>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="48018-6"/>
<display value="Gene studied [ID]"/>
</coding>
</code>
<valueCodeableConcept>
<coding>
<system value="http://www.genenames.org"/>
<code value="HGNC:4932"/>
<display value="HLA-B"/>
</coding>
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<method value="POST"/>
<url value="Observation"/>
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<entry>
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<resource>
<Observation>
<id value="CG-IG-HLA-FullBundle-01-18"/>
<meta>
<profile
value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"/>
</meta>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_CG-IG-HLA-FullBundle-01-18"> </a><p class="res-header-id"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-18</b></p><a name="CG-IG-HLA-FullBundle-01-18"> </a><a name="hcCG-IG-HLA-FullBundle-01-18"> </a><a name="CG-IG-HLA-FullBundle-01-18-en-US"> </a><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 84414-2}">Haplotype name</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab, Inc</a></p><p><b>value</b>: <span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-B*57:01:01G}">HLA-B*57:01:01G</span></p><p><b>method</b>: <span title="Codes:{http://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-05fa52d7-5c67-460a-8722-d3460b24d6fe">HLA-B*57:01:01, exon 2</a></li><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-db69e549-6267-4777-b4b9-8813f3329309">HLA-B*57:01:01, exon 3</a></li></ul><h3>Components</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes:{http://www.genenames.org HGNC:4932}">HLA-B</span></td></tr></table></div>
</text>
<status value="final"/>
<category>
<coding>
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<code value="laboratory"/>
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<category>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
<code value="GE"/>
</coding>
</category>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="84414-2"/>
<display value="Haplotype name"/>
</coding>
</code>
<subject>
<reference value="urn:uuid:13f34265-335c-4853-bc38-0815315edafa"/>
<type value="Patient"/>
<display value="John Storm"/>
</subject>
<effectiveDateTime value="2016-12-15"/>
<performer>
<reference value="urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950"/>
<display value="aTypingLab, Inc"/>
</performer>
<valueCodeableConcept>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA-B*57:01:01G"/>
<display value="HLA-B*57:01:01G"/>
</coding>
</valueCodeableConcept>
<method>
<coding>
<system value="http://www.ncbi.nlm.nih.gov/gtr"/>
<code value="GTR000000000.0"/>
</coding>
<text value="NGS based Class I HLA-A, -B, -C genotyping"/>
</method>
<specimen>
<reference value="urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"/>
<display value="buccal swab from John Storm"/>
</specimen>
<derivedFrom>
<reference value="urn:uuid:05fa52d7-5c67-460a-8722-d3460b24d6fe"/>
<type value="MolecularSequence"/>
<display value="HLA-B*57:01:01, exon 2"/>
</derivedFrom>
<derivedFrom>
<reference value="urn:uuid:db69e549-6267-4777-b4b9-8813f3329309"/>
<type value="MolecularSequence"/>
<display value="HLA-B*57:01:01, exon 3"/>
</derivedFrom>
<component>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="48018-6"/>
<display value="Gene studied [ID]"/>
</coding>
</code>
<valueCodeableConcept>
<coding>
<system value="http://www.genenames.org"/>
<code value="HGNC:4932"/>
<display value="HLA-B"/>
</coding>
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</component>
</Observation>
</resource>
<request>
<method value="POST"/>
<url value="Observation"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:60613a43-c4cb-4502-b3e2-cf9215feaa70"/>
<resource>
<Observation>
<id value="CG-IG-HLA-FullBundle-01-19"/>
<meta>
<profile
value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype"/>
</meta>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_CG-IG-HLA-FullBundle-01-19"> </a><p class="res-header-id"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-19</b></p><a name="CG-IG-HLA-FullBundle-01-19"> </a><a name="hcCG-IG-HLA-FullBundle-01-19"> </a><a name="CG-IG-HLA-FullBundle-01-19-en-US"> </a><p><b>basedOn</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-99309303-045e-4cf4-90d7-250d7a7476ea">Class I HLA genotyping for John Storm</a></p><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 84413-4}">Genotype display name</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab, Inc</a></p><p><b>value</b>: <span title="Codes:{http://glstring.org hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G}">hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G</span></p><p><b>method</b>: <span title="Codes:{http://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e2092243-2970-49d2-a90f-b90d1d49715a">HLA-B*15:01:01G, exons 2 and 3</a></li><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-792be53e-d4fb-4887-a367-815ef6c706e5">HLA-B*57:01:01G, exons 2 and 3</a></li></ul><h3>Components</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes:{http://www.genenames.org HGNC:4932}">HLA-B</span></td></tr></table></div>
</text>
<basedOn>
<reference value="urn:uuid:99309303-045e-4cf4-90d7-250d7a7476ea"/>
<type value="ServiceRequest"/>
<display value="Class I HLA genotyping for John Storm"/>
</basedOn>
<status value="final"/>
<category>
<coding>
<system
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<code value="laboratory"/>
</coding>
</category>
<category>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
<code value="GE"/>
</coding>
</category>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="84413-4"/>
<display value="Genotype display name"/>
</coding>
</code>
<subject>
<reference value="urn:uuid:13f34265-335c-4853-bc38-0815315edafa"/>
<type value="Patient"/>
<display value="John Storm"/>
</subject>
<effectiveDateTime value="2016-12-15"/>
<performer>
<reference value="urn:uuid:9243cc20-27bd-4f87-ba90-0328ed474950"/>
<display value="aTypingLab, Inc"/>
</performer>
<valueCodeableConcept>
<coding>
<system value="http://glstring.org"/>
<version value="1.0"/>
<code value="hla#3.23.0#HLA-B*15:01:01G+HLA-B*57:01:01G"/>
</coding>
</valueCodeableConcept>
<method>
<coding>
<system value="http://www.ncbi.nlm.nih.gov/gtr"/>
<code value="GTR000000000.0"/>
</coding>
<text value="NGS based Class I HLA-A, -B, -C genotyping"/>
</method>
<specimen>
<reference value="urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"/>
<display value="buccal swab from John Storm"/>
</specimen>
<derivedFrom>
<reference value="urn:uuid:e2092243-2970-49d2-a90f-b90d1d49715a"/>
<type value="Observation"/>
<display value="HLA-B*15:01:01G, exons 2 and 3"/>
</derivedFrom>
<derivedFrom>
<reference value="urn:uuid:792be53e-d4fb-4887-a367-815ef6c706e5"/>
<type value="Observation"/>
<display value="HLA-B*57:01:01G, exons 2 and 3"/>
</derivedFrom>
<component>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="48018-6"/>
<display value="Gene studied [ID]"/>
</coding>
</code>
<valueCodeableConcept>
<coding>
<system value="http://www.genenames.org"/>
<code value="HGNC:4932"/>
<display value="HLA-B"/>
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<url value="Observation"/>
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<entry>
<fullUrl value="urn:uuid:bb55c2bc-5ad2-4bc1-8ff3-c407d06b12d0"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-20"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-20"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-20</b></p><a name="CG-IG-HLA-FullBundle-01-20"> </a><a name="hcCG-IG-HLA-FullBundle-01-20"> </a><a name="CG-IG-HLA-FullBundle-01-20-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00401}">HLA-C*01:02:01</span></td><td>486</td><td>756</td></tr></table><p><b>observedSeq</b>: GCTCCCACTCCATGAAGTATTTCTTCACATCCGTGTCCCGGCCTGGCCGCGGAGAGCCCCGCTTCATCTCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCGAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA00401"/>
</coding>
<text value="HLA-C*01:02:01"/>
</referenceSeqId>
<windowStart value="486"/>
<windowEnd value="756"/>
</referenceSeq>
<observedSeq
value="GCTCCCACTCCATGAAGTATTTCTTCACATCCGTGTCCCGGCCTGGCCGCGGAGAGCCCCGCTTCATCTCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCGAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG"/>
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<request>
<method value="POST"/>
<url value="MolecularSequence"/>
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</entry>
<entry>
<fullUrl value="urn:uuid:46938bb2-0486-4e87-bfd3-89aab2d5e22f"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-21"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-21"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-21</b></p><a name="CG-IG-HLA-FullBundle-01-21"> </a><a name="hcCG-IG-HLA-FullBundle-01-21"> </a><a name="CG-IG-HLA-FullBundle-01-21-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00401}">HLA-C*01:02:01</span></td><td>1002</td><td>1278</td></tr></table><p><b>observedSeq</b>: GGTCTCACACCCTCCAGTGGATGTGTGGCTGCGACCTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCAGTACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCCGCGGACACCGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGCGGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCGCAGATACCTGGAGAACGGGAAGGAGACGCTGCAGCGCGCGG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
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<version value="3.23"/>
<code value="HLA00401"/>
</coding>
<text value="HLA-C*01:02:01"/>
</referenceSeqId>
<windowStart value="1002"/>
<windowEnd value="1278"/>
</referenceSeq>
<observedSeq
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<request>
<method value="POST"/>
<url value="MolecularSequence"/>
</request>
</entry>
<entry>
<fullUrl value="urn:uuid:2ae2ff34-279e-43c2-9018-b054fd3fc1ce"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-22"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-22"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-22</b></p><a name="CG-IG-HLA-FullBundle-01-22"> </a><a name="hcCG-IG-HLA-FullBundle-01-22"> </a><a name="CG-IG-HLA-FullBundle-01-22-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00413}">HLA-C*03:04:01:01</span></td><td>486</td><td>756</td></tr></table><p><b>observedSeq</b>: GCTCCCACTCCATGAGGTATTTCTACACCGCTGTGTCCCGGCCCGGCCGCGGGGAGCCCCACTTCATCGCAGTGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGTCCGAGAGGGGAGCCGCGGGCGCCGTGGGTGGAGCAGGAGGGGCCGGAGTATTGGGACCGGGAGACACAGAAGTACAAGCGCCAGGCACAGACTGACCGAGTGAGCCTGCGGAACCTGCGCGGCTACTACAACCAGAGCGAGGCCG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
<version value="3.23"/>
<code value="HLA00413"/>
</coding>
<text value="HLA-C*03:04:01:01"/>
</referenceSeqId>
<windowStart value="486"/>
<windowEnd value="756"/>
</referenceSeq>
<observedSeq
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<method value="POST"/>
<url value="MolecularSequence"/>
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<entry>
<fullUrl value="urn:uuid:19153ef1-68c6-47a2-9676-c4eefbd39af9"/>
<resource>
<MolecularSequence>
<id value="CG-IG-HLA-FullBundle-01-23"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="MolecularSequence_CG-IG-HLA-FullBundle-01-23"> </a><p class="res-header-id"><b>Generated Narrative: MolecularSequence CG-IG-HLA-FullBundle-01-23</b></p><a name="CG-IG-HLA-FullBundle-01-23"> </a><a name="hcCG-IG-HLA-FullBundle-01-23"> </a><a name="CG-IG-HLA-FullBundle-01-23-en-US"> </a><p><b>type</b>: DNA Sequence</p><p><b>coordinateSystem</b>: 0</p><h3>ReferenceSeqs</h3><table class="grid"><tr><td style="display: none">-</td><td><b>ReferenceSeqId</b></td><td><b>WindowStart</b></td><td><b>WindowEnd</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA00413}">HLA-C*03:04:01:01</span></td><td>1001</td><td>1277</td></tr></table><p><b>observedSeq</b>: GGTCTCACATCATCCAGAGGATGTATGGCTGCGACGTGGGGCCCGACGGGCGCCTCCTCCGCGGGTATGACCAGTACGCCTACGACGGCAAGGATTACATCGCCCTGAACGAGGATCTGCGCTCCTGGACCGCCGCGGACACGGCGGCTCAGATCACCCAGCGCAAGTGGGAGGCGGCCCGTGAGGCGGAGCAGCTGAGAGCCTACCTGGAGGGCCTGTGCGTGGAGTGGCTCCGCAGATACCTGAAGAATGGGAAGGAGACGCTGCAGCGCGCGG</p></div>
</text>
<type value="dna"/>
<coordinateSystem value="0"/>
<referenceSeq>
<referenceSeqId>
<coding>
<system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
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<code value="HLA00413"/>
</coding>
<text value="HLA-C*03:04:01:01"/>
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<windowStart value="1001"/>
<windowEnd value="1277"/>
</referenceSeq>
<observedSeq
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<entry>
<fullUrl value="urn:uuid:709c5315-9403-4867-9d82-0b953836665f"/>
<resource>
<Observation>
<id value="CG-IG-HLA-FullBundle-01-24"/>
<meta>
<profile
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<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_CG-IG-HLA-FullBundle-01-24"> </a><p class="res-header-id"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-24</b></p><a name="CG-IG-HLA-FullBundle-01-24"> </a><a name="hcCG-IG-HLA-FullBundle-01-24"> </a><a name="CG-IG-HLA-FullBundle-01-24-en-US"> </a><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 84414-2}">Haplotype name</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab, Inc</a></p><p><b>value</b>: <span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-C*01:02:01G}">HLA-C*01:02:01G</span></p><p><b>method</b>: <span title="Codes:{http://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-bb55c2bc-5ad2-4bc1-8ff3-c407d06b12d0">HLA-C*01:02:01, exon 2</a></li><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-46938bb2-0486-4e87-bfd3-89aab2d5e22f">HLA-C*01:02:01, exon 3</a></li></ul><h3>Components</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes:{http://www.genenames.org HGNC:4933}">HLA-C</span></td></tr></table></div>
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<code>
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<code value="84414-2"/>
<display value="Haplotype name"/>
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<effectiveDateTime value="2016-12-15"/>
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</coding>
</valueCodeableConcept>
<method>
<coding>
<system value="http://www.ncbi.nlm.nih.gov/gtr"/>
<code value="GTR000000000.0"/>
</coding>
<text value="NGS based Class I HLA-A, -B, -C genotyping"/>
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<specimen>
<reference value="urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"/>
<display value="buccal swab from John Storm"/>
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<derivedFrom>
<reference value="urn:uuid:bb55c2bc-5ad2-4bc1-8ff3-c407d06b12d0"/>
<type value="MolecularSequence"/>
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<derivedFrom>
<reference value="urn:uuid:46938bb2-0486-4e87-bfd3-89aab2d5e22f"/>
<type value="MolecularSequence"/>
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<component>
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<coding>
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<code value="48018-6"/>
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<valueCodeableConcept>
<coding>
<system value="http://www.genenames.org"/>
<code value="HGNC:4933"/>
<display value="HLA-C"/>
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<request>
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<entry>
<fullUrl value="urn:uuid:8b2aa21c-1426-4717-8ab0-a84d83df7d47"/>
<resource>
<Observation>
<id value="CG-IG-HLA-FullBundle-01-25"/>
<meta>
<profile
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</meta>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_CG-IG-HLA-FullBundle-01-25"> </a><p class="res-header-id"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-25</b></p><a name="CG-IG-HLA-FullBundle-01-25"> </a><a name="hcCG-IG-HLA-FullBundle-01-25"> </a><a name="CG-IG-HLA-FullBundle-01-25-en-US"> </a><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 84414-2}">Haplotype name</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab, Inc</a></p><p><b>value</b>: <span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-C*01:02:01G}">HLA-C*01:02:01G</span></p><p><b>method</b>: <span title="Codes:{http://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-2ae2ff34-279e-43c2-9018-b054fd3fc1ce">HLA-C*03:04:01:01, exon 2</a></li><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-19153ef1-68c6-47a2-9676-c4eefbd39af9">HLA-C*03:04:01:01, exon 3</a></li></ul><h3>Components</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes:{http://www.genenames.org HGNC:4933}">HLA-C</span></td></tr></table></div>
</text>
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<code value="laboratory"/>
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<category>
<coding>
<system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
<code value="GE"/>
</coding>
</category>
<code>
<coding>
<system value="http://loinc.org"/>
<code value="84414-2"/>
<display value="Haplotype name"/>
</coding>
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<subject>
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<type value="Patient"/>
<display value="John Storm"/>
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<effectiveDateTime value="2016-12-15"/>
<performer>
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<display value="aTypingLab, Inc"/>
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<valueCodeableConcept>
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<version value="3.23"/>
<code value="HLA-C*01:02:01G"/>
<display value="HLA-C*01:02:01G"/>
</coding>
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<method>
<coding>
<system value="http://www.ncbi.nlm.nih.gov/gtr"/>
<code value="GTR000000000.0"/>
</coding>
<text value="NGS based Class I HLA-A, -B, -C genotyping"/>
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<specimen>
<reference value="urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"/>
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<derivedFrom>
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<derivedFrom>
<reference value="urn:uuid:19153ef1-68c6-47a2-9676-c4eefbd39af9"/>
<type value="MolecularSequence"/>
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<component>
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<valueCodeableConcept>
<coding>
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<code value="HGNC:4933"/>
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<entry>
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<Observation>
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<meta>
<profile
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<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="Observation_CG-IG-HLA-FullBundle-01-26"> </a><p class="res-header-id"><b>Generated Narrative: Observation CG-IG-HLA-FullBundle-01-26</b></p><a name="CG-IG-HLA-FullBundle-01-26"> </a><a name="hcCG-IG-HLA-FullBundle-01-26"> </a><a name="CG-IG-HLA-FullBundle-01-26-en-US"> </a><p><b>basedOn</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-99309303-045e-4cf4-90d7-250d7a7476ea">Class I HLA genotyping for John Storm</a></p><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 84413-4}">Genotype display name</span></p><p><b>subject</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-13f34265-335c-4853-bc38-0815315edafa">John Storm</a></p><p><b>effective</b>: 2016-12-15</p><p><b>performer</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab, Inc</a></p><p><b>value</b>: <span title="Codes:{http://glstring.org hla#3.23.0#HLA-C*01:02:01G+HLA-C*03:04:01G}">hla#3.23.0#HLA-C*01:02:01G+HLA-C*03:04:01G</span></p><p><b>method</b>: <span title="Codes:{http://www.ncbi.nlm.nih.gov/gtr GTR000000000.0}">NGS based Class I HLA-A, -B, -C genotyping</span></p><p><b>specimen</b>: <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-e44fbe33-6084-4ae2-a95e-8bc451c63340">buccal swab from John Storm</a></p><p><b>derivedFrom</b>: </p><ul><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-8b2aa21c-1426-4717-8ab0-a84d83df7d47">HLA-C*03:04:01G, exons 2 and 3</a></li><li><a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-709c5315-9403-4867-9d82-0b953836665f">HLA-C*01:02:01G, exons 2 and 3</a></li></ul><h3>Components</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes:{http://www.genenames.org HGNC:4933}">HLA-C</span></td></tr></table></div>
</text>
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<code value="GE"/>
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<code>
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</code>
<subject>
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<type value="Patient"/>
<display value="John Storm"/>
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<effectiveDateTime value="2016-12-15"/>
<performer>
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<text value="NGS based Class I HLA-A, -B, -C genotyping"/>
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<specimen>
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<meta>
<profile
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<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><a name="DiagnosticReport_CG-IG-HLA-FullBundle-01-27"> </a><p class="res-header-id"><b>Generated Narrative: DiagnosticReport CG-IG-HLA-FullBundle-01-27</b></p><a name="CG-IG-HLA-FullBundle-01-27"> </a><a name="hcCG-IG-HLA-FullBundle-01-27"> </a><a name="CG-IG-HLA-FullBundle-01-27-en-US"> </a><h2><span title="Codes:{http://loinc.org 51969-4}, {http://www.genenames.org HGNC:588}">Genetic analysis report</span> (<span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span>) </h2><table class="grid"><tr><td>Subject</td><td>Not done yet</td></tr><tr><td>When For</td><td>2016-12-15</td></tr><tr><td>Reported</td><td>2016-12-15 14:15:30-0600</td></tr><tr><td>Performer</td><td> <a href="Bundle-bundle-CG-IG-HLA-FullBundle-01.html#urn-uuid-9243cc20-27bd-4f87-ba90-0328ed474950">aTypingLab Inc</a></td></tr></table><p><b>Report Details</b></p><table class="grid"><tr><td><b>Code</b></td><td><b>Value</b></td></tr><tr><td/><td/></tr><tr><td/><td/></tr><tr><td/><td/></tr></table></div>
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<extension
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<extension url="url">
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<display value="Class I HLA genotyping for John Storm"/>
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<code>
<coding>
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<code value="51969-4"/>
<display value="Genetic analysis report"/>
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<coding>
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<code value="HGNC:588"/>
<display value="Histocompatibility complex (HLA)"/>
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<type value="Patient"/>
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<effectiveDateTime value="2016-12-15"/>
<issued value="2016-12-15T14:15:30-06:00"/>
<performer>
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<type value="Organization"/>
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</performer>
<specimen>
<reference value="urn:uuid:e44fbe33-6084-4ae2-a95e-8bc451c63340"/>
<display value="buccal swab from John Storm"/>
</specimen>
<result>
<reference value="urn:uuid:49a86246-4004-42eb-9bdc-f542f93f9228"/>
<type value="Observation"/>
<display value="HLA-A: HLA-A:01:01:01G+HLA-A*01:02"/>
</result>
<result>
<reference value="urn:uuid:60613a43-c4cb-4502-b3e2-cf9215feaa70"/>
<type value="Observation"/>
<display value="HLA-B: HLA-B*15:01:01G+HLA-B*57:01:01G"/>
</result>
<result>
<reference value="urn:uuid:0e0a780e-4486-4cd0-bfae-7243c579f208"/>
<type value="Observation"/>
<display value="HLA-C: HLA-C*01:02:01G+HLA-C*03:04:01G"/>
</result>
</DiagnosticReport>
</resource>
<request>
<method value="POST"/>
<url value="DiagnosticReport"/>
</request>
</entry>
</Bundle>
IG © 2022+ HL7 International / Clinical Genomics. Package hl7.fhir.uv.genomics-reporting#3.0.0 based on FHIR 4.0.1. Generated 2024-12-12
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