Sample Type (SNOMED) to iGene Specimen Type - TTL Representation

NHS North West Genomics
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NHS North West Genomics, published by NHS North West Genomics. This guide is not an authorized publication; it is the continuous build for version 0.2.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/nw-gmsa.github.com/ and changes regularly. See the Directory of published versions
: Sample Type (SNOMED) to iGene Specimen Type - TTL Representation

Draft as of 2026-02-27
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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ConceptMap ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "SampleSCTtoIGENE"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div [ fhir:v "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap SampleSCTtoIGENE</b></p><a name=\"SampleSCTtoIGENE\"> </a><a name=\"hcSampleSCTtoIGENE\"> </a><p>Mapping from <a href=\"ValueSet-specimen-type.html\">Specimen Type</a> to (not specified)</p><br/><p><b>Group 1 </b>Mapping from <code>http://snomed.info/sct|http://snomed.info/sct/83821000000107</code> to <a href=\"CodeSystem-IGENE.html\">iGene Codes</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from http://snomed.info/sct|http://snomed.info/sct/83821000000107</td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-IGENE.html\" title=\"https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE\">iGene Codes</a></td></tr><tr><td style=\"border-right-width: 0px\">119297000</td><td style=\"border-left-width: 0px\">Blood specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">122556008</td><td style=\"border-left-width: 0px\">Cord blood specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">122575003</td><td style=\"border-left-width: 0px\">Urine specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: Urine</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">441479001</td><td style=\"border-left-width: 0px\">Fresh tissue specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: TC</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">16214131000119100</td><td style=\"border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: TC</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">119342007</td><td style=\"border-left-width: 0px\">Saliva specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: SALIVA</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">309147000</td><td style=\"border-left-width: 0px\">Thyroid cyst fluid sample</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: Cystic fluid</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">258450006</td><td style=\"border-left-width: 0px\">Cerebrospinal fluid sample</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: CSF</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">119373006</td><td style=\"border-left-width: 0px\">Amniotic fluid specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: AF</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">309201001</td><td style=\"border-left-width: 0px\">Ascitic fluid sample</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: Ascitic fluid</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">258580003</td><td style=\"border-left-width: 0px\">Whole blood sample</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">737357006</td><td style=\"border-left-width: 0px\">Foetal blood specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">122555007</td><td style=\"border-left-width: 0px\">Venous blood specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">440500007</td><td style=\"border-left-width: 0px\">Blood spot specimen (specimen)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BSP</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">119359002</td><td style=\"border-left-width: 0px\">Bone marrow specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BM</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">733104004</td><td style=\"border-left-width: 0px\">Buccal swab</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BS</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">258565009</td><td style=\"border-left-width: 0px\">Chorionic villi sample</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: CVB</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">702451000</td><td style=\"border-left-width: 0px\">Cultured cells (substance)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: Cult Cells</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">441652008</td><td style=\"border-left-width: 0px; border-bottom-style: none\">Formalin-fixed paraffin-embedded tissue specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">SAMPLE: FFPE-SL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">SAMPLE: FFPE-SH</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">SAMPLE: FFPE-PCS</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">3040001000004100</td><td style=\"border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: FFPE-WB</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">122571007</td><td style=\"border-left-width: 0px\">Pericardial fluid specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: PERICARDIAL FLUID</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">418564007</td><td style=\"border-left-width: 0px\">Pleural fluid specimen (specimen)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: PLF</td><td style=\"border-left-width: 0px\"/></tr></table></div>"^^rdf:XMLLiteral ]
  ] ; # 
  fhir:url [
fhir:v "https://fhir.nwgenomics.nhs.uk/ConceptMap/SampleSCTtoIGENE"^^xsd:anyURI ;
fhir:l <https://fhir.nwgenomics.nhs.uk/ConceptMap/SampleSCTtoIGENE>
  ] ; # 
  fhir:version [ fhir:v "0.2.1"] ; # 
  fhir:title [ fhir:v "Sample Type (SNOMED) to iGene Specimen Type"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:date [ fhir:v "2026-02-27T17:59:04+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "NHS North West Genomics"] ; # 
  fhir:contact ( [
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://www.nwgenomics.nhs.uk/contact-us" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "Sample Type (SNOMED) to iGene Specimen Type"] ; # 
  fhir:jurisdiction ( [
    ( fhir:coding [
fhir:system [
fhir:v "urn:iso:std:iso:3166"^^xsd:anyURI ;
fhir:l <urn:iso:std:iso:3166>       ] ;
fhir:code [ fhir:v "GB" ] ;
fhir:display [ fhir:v "United Kingdom of Great Britain and Northern Ireland" ]     ] )
  ] ) ; # 
  fhir:source [
a fhir:Canonical ;
fhir:v "https://fhir.nwgenomics.nhs.uk/ValueSet/specimen-type"^^xsd:anyURI ;
fhir:l <https://fhir.nwgenomics.nhs.uk/ValueSet/specimen-type>
  ] ; # 
  fhir:group ( [
fhir:source [
fhir:v "http://snomed.info/sct"^^xsd:anyURI ;
fhir:l <http://snomed.info/sct>     ] ;
fhir:sourceVersion [ fhir:v "http://snomed.info/sct/83821000000107" ] ;
fhir:target [
fhir:v "https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE"^^xsd:anyURI ;
fhir:l <https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE>     ] ;
    ( fhir:element [
fhir:code [ fhir:v "119297000" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: BL" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "122556008" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: BL" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "122575003" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: Urine" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "441479001" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: TC" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "16214131000119100" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: TC" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "119342007" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: SALIVA" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "309147000" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: Cystic fluid" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "258450006" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: CSF" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "119373006" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: AF" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "309201001" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: Ascitic fluid" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "258580003" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: BL" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "737357006" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: BL" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "122555007" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: BL" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "440500007" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: BSP" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "119359002" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: BM" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "733104004" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: BS" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "258565009" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: CVB" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "702451000" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: Cult Cells" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "441652008" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: FFPE-SL" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] [
fhir:code [ fhir:v "SAMPLE: FFPE-SH" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] [
fhir:code [ fhir:v "SAMPLE: FFPE-PCS" ] ;
fhir:equivalence [ fhir:v "relatedto" ]       ] )     ] [
fhir:code [ fhir:v "3040001000004100" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: FFPE-WB" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "122571007" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: PERICARDIAL FLUID" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] [
fhir:code [ fhir:v "418564007" ] ;
      ( fhir:target [
fhir:code [ fhir:v "SAMPLE: PLF" ] ;
fhir:equivalence [ fhir:v "equivalent" ]       ] )     ] )
  ] ) . #
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