NHS North West Genomics
0.2.1 - ci-build
NHS North West Genomics
0.2.1 - ci-build
NHS North West Genomics, published by NHS North West Genomics. This guide is not an authorized publication; it is the continuous build for version 0.2.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/nw-gmsa.github.com/ and changes regularly. See the Directory of published versions
| Draft as of 2026-02-27 |
{
"resourceType" : "ConceptMap",
"id" : "SampleSCTtoIGENE",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap SampleSCTtoIGENE</b></p><a name=\"SampleSCTtoIGENE\"> </a><a name=\"hcSampleSCTtoIGENE\"> </a><p>Mapping from <a href=\"ValueSet-specimen-type.html\">Specimen Type</a> to (not specified)</p><br/><p><b>Group 1 </b>Mapping from <code>http://snomed.info/sct|http://snomed.info/sct/83821000000107</code> to <a href=\"CodeSystem-IGENE.html\">iGene Codes</a></p><table class=\"grid\"><tr><td colspan=\"2\"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan=\"2\"><b>Target Concept Details</b></td></tr><tr><td colspan=\"2\"><b>Codes</b> from http://snomed.info/sct|http://snomed.info/sct/83821000000107</td><td/><td colspan=\"2\"><b>Codes</b> from <a href=\"CodeSystem-IGENE.html\" title=\"https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE\">iGene Codes</a></td></tr><tr><td style=\"border-right-width: 0px\">119297000</td><td style=\"border-left-width: 0px\">Blood specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">122556008</td><td style=\"border-left-width: 0px\">Cord blood specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">122575003</td><td style=\"border-left-width: 0px\">Urine specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: Urine</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">441479001</td><td style=\"border-left-width: 0px\">Fresh tissue specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: TC</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">16214131000119100</td><td style=\"border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: TC</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">119342007</td><td style=\"border-left-width: 0px\">Saliva specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: SALIVA</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">309147000</td><td style=\"border-left-width: 0px\">Thyroid cyst fluid sample</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: Cystic fluid</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">258450006</td><td style=\"border-left-width: 0px\">Cerebrospinal fluid sample</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: CSF</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">119373006</td><td style=\"border-left-width: 0px\">Amniotic fluid specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: AF</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">309201001</td><td style=\"border-left-width: 0px\">Ascitic fluid sample</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: Ascitic fluid</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">258580003</td><td style=\"border-left-width: 0px\">Whole blood sample</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">737357006</td><td style=\"border-left-width: 0px\">Foetal blood specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">122555007</td><td style=\"border-left-width: 0px\">Venous blood specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">440500007</td><td style=\"border-left-width: 0px\">Blood spot specimen (specimen)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BSP</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">119359002</td><td style=\"border-left-width: 0px\">Bone marrow specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BM</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">733104004</td><td style=\"border-left-width: 0px\">Buccal swab</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: BS</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">258565009</td><td style=\"border-left-width: 0px\">Chorionic villi sample</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: CVB</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">702451000</td><td style=\"border-left-width: 0px\">Cultured cells (substance)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: Cult Cells</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px; border-bottom-style: none\">441652008</td><td style=\"border-left-width: 0px; border-bottom-style: none\">Formalin-fixed paraffin-embedded tissue specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">SAMPLE: FFPE-SL</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px; border-top-style: none; border-bottom-style: none\"/><td style=\"border-left-width: 0px; border-top-style: none; border-bottom-style: none\"/><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">SAMPLE: FFPE-SH</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px; border-top-style: none\"/><td style=\"border-top-style: none; border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto\" title=\"relatedto\">is related to</a></td><td style=\"border-right-width: 0px\">SAMPLE: FFPE-PCS</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">3040001000004100</td><td style=\"border-left-width: 0px\"/><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: FFPE-WB</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">122571007</td><td style=\"border-left-width: 0px\">Pericardial fluid specimen</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: PERICARDIAL FLUID</td><td style=\"border-left-width: 0px\"/></tr><tr><td style=\"border-right-width: 0px\">418564007</td><td style=\"border-left-width: 0px\">Pleural fluid specimen (specimen)</td><td><a href=\"http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td style=\"border-right-width: 0px\">SAMPLE: PLF</td><td style=\"border-left-width: 0px\"/></tr></table></div>"
},
"url" : "https://fhir.nwgenomics.nhs.uk/ConceptMap/SampleSCTtoIGENE",
"version" : "0.2.1",
"title" : "Sample Type (SNOMED) to iGene Specimen Type",
"status" : "draft",
"date" : "2026-02-27T17:59:04+00:00",
"publisher" : "NHS North West Genomics",
"contact" : [
{
"telecom" : [
{
"system" : "url",
"value" : "https://www.nwgenomics.nhs.uk/contact-us"
}
]
}
],
"description" : "Sample Type (SNOMED) to iGene Specimen Type",
"jurisdiction" : [
{
"coding" : [
{
"system" : "urn:iso:std:iso:3166",
"code" : "GB",
"display" : "United Kingdom of Great Britain and Northern Ireland"
}
]
}
],
"sourceCanonical" : "https://fhir.nwgenomics.nhs.uk/ValueSet/specimen-type",
"group" : [
{
"source" : "http://snomed.info/sct",
"sourceVersion" : "http://snomed.info/sct/83821000000107",
"target" : "https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE",
"element" : [
{
"code" : "119297000",
"target" : [
{
"code" : "SAMPLE: BL",
"equivalence" : "equivalent"
}
]
},
{
"code" : "122556008",
"target" : [
{
"code" : "SAMPLE: BL",
"equivalence" : "equivalent"
}
]
},
{
"code" : "122575003",
"target" : [
{
"code" : "SAMPLE: Urine",
"equivalence" : "equivalent"
}
]
},
{
"code" : "441479001",
"target" : [
{
"code" : "SAMPLE: TC",
"equivalence" : "equivalent"
}
]
},
{
"code" : "16214131000119100",
"target" : [
{
"code" : "SAMPLE: TC",
"equivalence" : "equivalent"
}
]
},
{
"code" : "119342007",
"target" : [
{
"code" : "SAMPLE: SALIVA",
"equivalence" : "equivalent"
}
]
},
{
"code" : "309147000",
"target" : [
{
"code" : "SAMPLE: Cystic fluid",
"equivalence" : "equivalent"
}
]
},
{
"code" : "258450006",
"target" : [
{
"code" : "SAMPLE: CSF",
"equivalence" : "equivalent"
}
]
},
{
"code" : "119373006",
"target" : [
{
"code" : "SAMPLE: AF",
"equivalence" : "equivalent"
}
]
},
{
"code" : "309201001",
"target" : [
{
"code" : "SAMPLE: Ascitic fluid",
"equivalence" : "equivalent"
}
]
},
{
"code" : "258580003",
"target" : [
{
"code" : "SAMPLE: BL",
"equivalence" : "equivalent"
}
]
},
{
"code" : "737357006",
"target" : [
{
"code" : "SAMPLE: BL",
"equivalence" : "equivalent"
}
]
},
{
"code" : "122555007",
"target" : [
{
"code" : "SAMPLE: BL",
"equivalence" : "equivalent"
}
]
},
{
"code" : "440500007",
"target" : [
{
"code" : "SAMPLE: BSP",
"equivalence" : "equivalent"
}
]
},
{
"code" : "119359002",
"target" : [
{
"code" : "SAMPLE: BM",
"equivalence" : "equivalent"
}
]
},
{
"code" : "733104004",
"target" : [
{
"code" : "SAMPLE: BS",
"equivalence" : "equivalent"
}
]
},
{
"code" : "258565009",
"target" : [
{
"code" : "SAMPLE: CVB",
"equivalence" : "equivalent"
}
]
},
{
"code" : "702451000",
"target" : [
{
"code" : "SAMPLE: Cult Cells",
"equivalence" : "equivalent"
}
]
},
{
"code" : "441652008",
"target" : [
{
"code" : "SAMPLE: FFPE-SL",
"equivalence" : "relatedto"
},
{
"code" : "SAMPLE: FFPE-SH",
"equivalence" : "relatedto"
},
{
"code" : "SAMPLE: FFPE-PCS",
"equivalence" : "relatedto"
}
]
},
{
"code" : "3040001000004100",
"target" : [
{
"code" : "SAMPLE: FFPE-WB",
"equivalence" : "equivalent"
}
]
},
{
"code" : "122571007",
"target" : [
{
"code" : "SAMPLE: PERICARDIAL FLUID",
"equivalence" : "equivalent"
}
]
},
{
"code" : "418564007",
"target" : [
{
"code" : "SAMPLE: PLF",
"equivalence" : "equivalent"
}
]
}
]
}
]
}
IG © 2024+ NHS North West Genomics. Package fhir.nwgenomics.nhs.uk#0.2.1 based on FHIR 4.0.1. Generated 2026-02-27
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