NHS North West Genomics
0.2.1 - ci-build
NHS North West Genomics
0.2.1 - ci-build
NHS North West Genomics, published by NHS North West Genomics. This guide is not an authorized publication; it is the continuous build for version 0.2.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/nw-gmsa.github.com/ and changes regularly. See the Directory of published versions
| Draft as of 2026-02-27 |
<ConceptMap xmlns="http://hl7.org/fhir">
<id value="SampleSCTtoIGENE"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ConceptMap SampleSCTtoIGENE</b></p><a name="SampleSCTtoIGENE"> </a><a name="hcSampleSCTtoIGENE"> </a><p>Mapping from <a href="ValueSet-specimen-type.html">Specimen Type</a> to (not specified)</p><br/><p><b>Group 1 </b>Mapping from <code>http://snomed.info/sct|http://snomed.info/sct/83821000000107</code> to <a href="CodeSystem-IGENE.html">iGene Codes</a></p><table class="grid"><tr><td colspan="2"><b>Source Concept Details</b></td><td><b>Relationship</b></td><td colspan="2"><b>Target Concept Details</b></td></tr><tr><td colspan="2"><b>Codes</b> from http://snomed.info/sct|http://snomed.info/sct/83821000000107</td><td/><td colspan="2"><b>Codes</b> from <a href="CodeSystem-IGENE.html" title="https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE">iGene Codes</a></td></tr><tr><td style="border-right-width: 0px">119297000</td><td style="border-left-width: 0px">Blood specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: BL</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">122556008</td><td style="border-left-width: 0px">Cord blood specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: BL</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">122575003</td><td style="border-left-width: 0px">Urine specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: Urine</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">441479001</td><td style="border-left-width: 0px">Fresh tissue specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: TC</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">16214131000119100</td><td style="border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: TC</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">119342007</td><td style="border-left-width: 0px">Saliva specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: SALIVA</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">309147000</td><td style="border-left-width: 0px">Thyroid cyst fluid sample</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: Cystic fluid</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">258450006</td><td style="border-left-width: 0px">Cerebrospinal fluid sample</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: CSF</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">119373006</td><td style="border-left-width: 0px">Amniotic fluid specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: AF</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">309201001</td><td style="border-left-width: 0px">Ascitic fluid sample</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: Ascitic fluid</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">258580003</td><td style="border-left-width: 0px">Whole blood sample</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: BL</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">737357006</td><td style="border-left-width: 0px">Foetal blood specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: BL</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">122555007</td><td style="border-left-width: 0px">Venous blood specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: BL</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">440500007</td><td style="border-left-width: 0px">Blood spot specimen (specimen)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: BSP</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">119359002</td><td style="border-left-width: 0px">Bone marrow specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: BM</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">733104004</td><td style="border-left-width: 0px">Buccal swab</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: BS</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">258565009</td><td style="border-left-width: 0px">Chorionic villi sample</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: CVB</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">702451000</td><td style="border-left-width: 0px">Cultured cells (substance)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: Cult Cells</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px; border-bottom-style: none">441652008</td><td style="border-left-width: 0px; border-bottom-style: none">Formalin-fixed paraffin-embedded tissue specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">SAMPLE: FFPE-SL</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px; border-top-style: none; border-bottom-style: none"/><td style="border-left-width: 0px; border-top-style: none; border-bottom-style: none"/><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">SAMPLE: FFPE-SH</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px; border-top-style: none"/><td style="border-top-style: none; border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#relatedto" title="relatedto">is related to</a></td><td style="border-right-width: 0px">SAMPLE: FFPE-PCS</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">3040001000004100</td><td style="border-left-width: 0px"/><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: FFPE-WB</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">122571007</td><td style="border-left-width: 0px">Pericardial fluid specimen</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: PERICARDIAL FLUID</td><td style="border-left-width: 0px"/></tr><tr><td style="border-right-width: 0px">418564007</td><td style="border-left-width: 0px">Pleural fluid specimen (specimen)</td><td><a href="http://hl7.org/fhir/R5/codesystem-concept-map-relationship.html#equivalent" title="equivalent">is equivalent to</a></td><td style="border-right-width: 0px">SAMPLE: PLF</td><td style="border-left-width: 0px"/></tr></table></div>
</text>
<url value="https://fhir.nwgenomics.nhs.uk/ConceptMap/SampleSCTtoIGENE"/>
<version value="0.2.1"/>
<title value="Sample Type (SNOMED) to iGene Specimen Type"/>
<status value="draft"/>
<date value="2026-02-27T17:59:04+00:00"/>
<publisher value="NHS North West Genomics"/>
<contact>
<telecom>
<system value="url"/>
<value value="https://www.nwgenomics.nhs.uk/contact-us"/>
</telecom>
</contact>
<description value="Sample Type (SNOMED) to iGene Specimen Type"/>
<jurisdiction>
<coding>
<system value="urn:iso:std:iso:3166"/>
<code value="GB"/>
<display value="United Kingdom of Great Britain and Northern Ireland"/>
</coding>
</jurisdiction>
<sourceCanonical
value="https://fhir.nwgenomics.nhs.uk/ValueSet/specimen-type"/>
<group>
<source value="http://snomed.info/sct"/>
<sourceVersion value="http://snomed.info/sct/83821000000107"/>
<target value="https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE"/>
<element>
<code value="119297000"/>
<target>
<code value="SAMPLE: BL"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="122556008"/>
<target>
<code value="SAMPLE: BL"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="122575003"/>
<target>
<code value="SAMPLE: Urine"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="441479001"/>
<target>
<code value="SAMPLE: TC"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="16214131000119100"/>
<target>
<code value="SAMPLE: TC"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="119342007"/>
<target>
<code value="SAMPLE: SALIVA"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="309147000"/>
<target>
<code value="SAMPLE: Cystic fluid"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="258450006"/>
<target>
<code value="SAMPLE: CSF"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="119373006"/>
<target>
<code value="SAMPLE: AF"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="309201001"/>
<target>
<code value="SAMPLE: Ascitic fluid"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="258580003"/>
<target>
<code value="SAMPLE: BL"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="737357006"/>
<target>
<code value="SAMPLE: BL"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="122555007"/>
<target>
<code value="SAMPLE: BL"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="440500007"/>
<target>
<code value="SAMPLE: BSP"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="119359002"/>
<target>
<code value="SAMPLE: BM"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="733104004"/>
<target>
<code value="SAMPLE: BS"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="258565009"/>
<target>
<code value="SAMPLE: CVB"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="702451000"/>
<target>
<code value="SAMPLE: Cult Cells"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="441652008"/>
<target>
<code value="SAMPLE: FFPE-SL"/>
<equivalence value="relatedto"/>
</target>
<target>
<code value="SAMPLE: FFPE-SH"/>
<equivalence value="relatedto"/>
</target>
<target>
<code value="SAMPLE: FFPE-PCS"/>
<equivalence value="relatedto"/>
</target>
</element>
<element>
<code value="3040001000004100"/>
<target>
<code value="SAMPLE: FFPE-WB"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="122571007"/>
<target>
<code value="SAMPLE: PERICARDIAL FLUID"/>
<equivalence value="equivalent"/>
</target>
</element>
<element>
<code value="418564007"/>
<target>
<code value="SAMPLE: PLF"/>
<equivalence value="equivalent"/>
</target>
</element>
</group>
</ConceptMap>
IG © 2024+ NHS North West Genomics. Package fhir.nwgenomics.nhs.uk#0.2.1 based on FHIR 4.0.1. Generated 2026-02-27
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