NHS North West Genomics
0.0.8 - ci-build United Kingdom flag

NHS North West Genomics, published by NHS North West Genomics. This guide is not an authorized publication; it is the continuous build for version 0.0.8 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/nw-gmsa.github.com/ and changes regularly. See the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Laboratory Testing Workflow (LTW)
... 3 Patient Administration (PAM)
... 4 Healthcare Provider Directory (HPD)
... 5 Health Information Exchange (HIE)
... 6 Placer Order Management [LAB-1]
... 7 Filler Order Management [LAB-2]
... 8 Order Results Management [LAB-3]
... 9 Work Order Management [LAB-4]
... 10 Test Results Management [LAB-5]
... 11 Query Existing Data [QEDm]
... 12 Mobile Access to Health Documents [MHD]
... 13 Overview
... 14 HL7 v2 Artefacts
... 15 Architecture
... 16 Testing
... 17 Support
... 18 Authorisation (OAuth2)
... 19 Deployment
... 20 OAuth2
... 21 Workflow Options
... 22 Identifiers and Codes
... 23 Domain Archetypes Introduction
... 24 Care Services Discovery
... 25 Artifacts Summary
.... 25.1 Automation Manager
.... 25.2 Clinical Document
.... 25.3 Intermediary
.... 25.4 Order Filler
.... 25.5 Order Placer
.... 25.6 Order Result Tracker
.... 25.7 Patient Identity Source
.... 25.8 Provider Information Source
.... 25.9 CapabilityStatement for NW GMSA Clinical Data Repository
.... 25.10 CapabilityStatement for NW GMSA Regional Integration Engine for Genomics
.... 25.11 Process Message
.... 25.12 Message Definition - Laboratory Order
.... 25.13 Message Definition - Patient Encounter
.... 25.14 Message Definition - Patient Identity
.... 25.15 Message Definition - Unsolicited Observation
.... 25.16 assigner
.... 25.17 CBC panel - Blood by Automated count
.... 25.18 Comprehensive metabolic 2000 panel - Serum or Plasma
.... 25.19 Master HL7 genetic variant reporting panel
.... 25.20 North West Genomics Test Order
.... 25.21 North West Genomics Test Order Future
.... 25.22 North West Genomics Test Report
.... 25.23 Pedigree
.... 25.24 Binary
.... 25.25 Composition
.... 25.26 Composition Genomic Report
.... 25.27 Condition
.... 25.28 Diagnostic Report
.... 25.29 DocumentReference
.... 25.30 Encounter
.... 25.31 MessageHeader
.... 25.32 Observation
.... 25.33 Observation Diagnostic Implication
.... 25.34 Observation Genotype
.... 25.35 Observation Panel
.... 25.36 Observation Therapeutic Implication
.... 25.37 Observation Variant
.... 25.38 OperationOutcome
.... 25.39 Organization
.... 25.40 Patient
.... 25.41 Practitioner
.... 25.42 PractitionerRole
.... 25.43 Procedure Genomic Study
.... 25.44 Questionnaire
.... 25.45 QuestionnaireResponse
.... 25.46 ServiceRequest
.... 25.47 Specimen
.... 25.48 Task
.... 25.49 Accession Number
.... 25.50 Attachment
.... 25.51 CodeableReference
.... 25.52 Correlation Identifier
.... 25.53 Filler Order Number
.... 25.54 Genomics Pedigree Number
.... 25.55 Hospital Provider Spell Identifier
.... 25.56 Medical Record Number
.... 25.57 NHS Number
.... 25.58 Organisation Code
.... 25.59 Organisation Site Identifier
.... 25.60 Placer Group Number
.... 25.61 Placer Order Number
.... 25.62 Practitioner Identifier
.... 25.63 Report Number
.... 25.64 Shipment Tracking Number
.... 25.65 DiagnosticReport procedure
.... 25.66 ExtCodeableReference
.... 25.67 Admission Method
.... 25.68 Admission Source
.... 25.69 Discharge Destination
.... 25.70 Discharge Disposition
.... 25.71 DocumentEntry Class
.... 25.72 DocumentEntry mimeType
.... 25.73 DocumentEntry Type
.... 25.74 Ethnicity
.... 25.75 Facility Type
.... 25.76 Genomic Cancer Test Directory
.... 25.77 Genomic Clinical Indication Codes
.... 25.78 Genomic Disorder Carrier
.... 25.79 Genomic Finding
.... 25.80 Genomic Finding Detected
.... 25.81 Genomic Rare and Inherited Disease Test Directory
.... 25.82 Genomic Test Codes
.... 25.83 Genomic Test Outcome Codes
.... 25.84 NW IdentifierType
.... 25.85 Order Category
.... 25.86 Patient Encounter Trigger
.... 25.87 Patient Identity Trigger
.... 25.88 Practitioner Identifiers
.... 25.89 Request Priority
.... 25.90 Service
.... 25.91 Specialty
.... 25.92 Specimen Type
.... 25.93 Yes/No
.... 25.94 Yes/No/Unknown
.... 25.95 MFT EPIC Question Ids
.... 25.96 NHS England Genomic Clinical Indication Code
.... 25.97 NHS England Genomic Test Code
.... 25.98 NHS England Genomic Test Outcome Code
.... 25.99 NW GMSA Codes
.... 25.100 UK Professional License
.... 25.101 GMC Number
.... 25.102 GMP Number
.... 25.103 NHS Number
.... 25.104 ODS Code
.... 25.105 ODS Site Code
.... 25.106 LOINC to SNOMED UK edition
.... 25.107 SNOMED LOINC edition to SNOMED UK edition
.... 25.108 Clinical and Genomic Workflow
.... 25.109 Collect Specimen - Biopsy Procedure for obtaining a specimen, part of a diagnostic pathway. Day case admission.
.... 25.110 Genomic Test Order Process including order entry and transmission of the order
.... 25.111 Genomic Test Report Process
.... 25.112 Bundle 'Event Message' - Patient Update
.... 25.113 Bundle 'Message' - Genomics Order Reply
.... 25.114 Bundle 'Message' - Genomics Order Reply Acknowledgement
.... 25.115 Bundle 'Transaction' - Genomics Order Asynchronous Message Reply Acknowledgement
.... 25.116 Bundle - Conditions for a Patient QEDm
.... 25.117 Bundle - Form Search Results SDC
.... 25.118 Bundle - Genomic Diagnostic Implication for a Patient QEDm
.... 25.119 Bundle - Genomic Variant for a Patient QEDm
.... 25.120 Bundle - Genomic Variant Gene = NTHL1 QEDm
.... 25.121 Bundle - Patient Search Results by Medical Record Number PDQ
.... 25.122 Bundle - Patient Search Results by NHS Number PDQ
.... 25.123 Condition - Carcinoma
.... 25.124 Condition - Lynch Syndrome
.... 25.125 Consanguinity (type=CE)
.... 25.126 FamilyMemberHistory - Ricky LEEDS
.... 25.127 FamilyMemberHistory - Sarah-Jane Nottingham
.... 25.128 Genomic Order Entry Optional Questions
.... 25.129 Genomic Report BRCA1 Variant Example
.... 25.130 Genomic Report Ovarian Carcinoma Diagnostic Implication Example
.... 25.131 MCV - Mean corpuscular volume
.... 25.132 Message Header - Genomic Order Reply fatal
.... 25.133 Message Header - Genomic Order Reply fatal Acknowledgement
.... 25.134 Message Header - Genomic Order Reply Transient
.... 25.135 Message Header - Genomic Report
.... 25.136 Message Header - Patient
.... 25.137 Observation - Lynch Syndrome Mutation Finding
.... 25.138 Order Tracking Number (type=ST)
.... 25.139 Organization MANCHESTER UNIVERSITY NHS FOUNDATION TRUST
.... 25.140 Organization North West GMSA
.... 25.141 Output from a FHIR Validation
.... 25.142 Parameters Expansion Profile
.... 25.143 Patient - Liam Manchester NHS Number: 9012345678
.... 25.144 Patient - Paul Liverpool NHS Number: 9876543210
.... 25.145 Patient - Ricky Leeds NHS Number: 9321087654
.... 25.146 PractitionerRole Result INTERPRETER
.... 25.147 Pregnancy Expected Delivery Date (type=DT)
.... 25.148 Procedure - Liver Biopsy
.... 25.149 Task Genomic Test Completed
.... 25.150 Task Genomic Test Requested
.... 25.151 Binary Genomic Record of Discussion Example
.... 25.152 Bundle 'Message' - Genomics Order Reply
.... 25.153 Bundle 'Message' - Genomics Order with Attachment
.... 25.154 Bundle 'Message' - Genomics Order with Coded Entries
.... 25.155 Bundle 'SearchSet' - Genomics Order
.... 25.156 Document Reference Laboratory Order
.... 25.157 Encounter 'episode/stay' Example
.... 25.158 Message Header - Genomic Order
.... 25.159 Message Header - Genomic Order Reply ok
.... 25.160 Patient - OctaviaCHISLETT NHS Number: 9449305552
.... 25.161 PractitionerRole C3456789 Example
.... 25.162 ServiceRequest Attachment Example
.... 25.163 ServiceRequest Coded Entries Example
.... 25.164 Specimen Example
.... 25.165 Binary Genomic Report Example
.... 25.166 Bundle 'Message' - Genomics Report
.... 25.167 Diagnostic Report Example.
.... 25.168 Document Reference Laboratory Report
.... 25.169 Message Header - Genomic Report
.... 25.170 DiagnosticImplication - Cystic Fibrosis Carrier
.... 25.171 DiagnosticImplication - Lynch Syndrome
.... 25.172 Genomic Study - Cystic Fibrosis
.... 25.173 Genomic Study - Lynch Syndrome
.... 25.174 Variant - CFTR
.... 25.175 Variant - NTHL1
.... 25.176 Bundle `Document` - Genetic Report
.... 25.177 Composition - Genomics Report Octavia CHISLETT
.... 25.178 EPIC-OBR-1 Example
.... 25.179 EPIC-OBX-10 Example
.... 25.180 EPIC-OBX-11 Example
.... 25.181 EPIC-OBX-2 Example
.... 25.182 EPIC-OBX-4 Example
.... 25.183 EPIC-OBX-6 Example
.... 25.184 EPIC-OBX-7 Example
.... 25.185 EPIC-OBX-8 Example
.... 25.186 Genomic Referral Category
.... 25.187 High infection risk sample
.... 25.188 Informed Consent
.... 25.189 OBX Pregnancy
.... 25.190 Supervising Clinician
.... 25.191 Bundle-Bundle-NonWGSTestOrderForm-Reanalysis-Example
.... 25.192 Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example
.... 25.193 Bundle-NonWGSTestOrderForm-FetalScenario-Example
.... 25.194 837d78a0-30cd-478c-83a8-f83d16fc4443