NHS North West Genomics
0.0.8 - ci-build United Kingdom flag

NHS North West Genomics, published by NHS North West Genomics. This guide is not an authorized publication; it is the continuous build for version 0.0.8 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/nw-gmsa.github.com/ and changes regularly. See the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Laboratory Testing Workflow (LTW)
... 3 Patient Administration (PAM)
... 4 Healthcare Provider Directory (HPD)
... 5 Health Information Exchange (HIE)
... 6 Placer Order Management [LAB-1]
... 7 Filler Order Management [LAB-2]
... 8 Order Results Management [LAB-3]
... 9 Work Order Management [LAB-4]
... 10 Test Results Management [LAB-5]
... 11 Query Existing Data [QEDm]
... 12 Mobile Access to Health Documents [MHD]
... 13 Overview
... 14 HL7 v2 Artefacts
... 15 Architecture
... 16 Testing
... 17 Support
... 18 Authorisation (OAuth2)
... 19 Deployment
... 20 OAuth2
... 21 Workflow Options
... 22 Identifiers and Codes
... 23 Domain Archetypes Introduction
... 24 Care Services Discovery
... 25 Artifacts Summary
.... 25.1 Automation Manager
.... 25.2 Clinical Document
.... 25.3 Intermediary
.... 25.4 Order Filler
.... 25.5 Order Placer
.... 25.6 Order Result Tracker
.... 25.7 Patient Identity Source
.... 25.8 Provider Information Source
.... 25.9 CapabilityStatement for NW GMSA Clinical Data Repository
.... 25.10 CapabilityStatement for NW GMSA Regional Integration Engine for Genomics
.... 25.11 Process Message
.... 25.12 Message Definition - Laboratory Order
.... 25.13 Message Definition - Patient Encounter
.... 25.14 Message Definition - Patient Identity
.... 25.15 Message Definition - Unsolicited Observation
.... 25.16 assigner
.... 25.17 CBC panel - Blood by Automated count
.... 25.18 Comprehensive metabolic 2000 panel - Serum or Plasma
.... 25.19 Master HL7 genetic variant reporting panel
.... 25.20 North West Genomics Test Order
.... 25.21 North West Genomics Test Order Future
.... 25.22 North West Genomics Test Report
.... 25.23 Pedigree
.... 25.24 Binary
.... 25.25 Composition
.... 25.26 Composition Genomic Report
.... 25.27 Condition
.... 25.28 Diagnostic Report
.... 25.29 DocumentReference
.... 25.30 Encounter
.... 25.31 MessageHeader
.... 25.32 Observation
.... 25.33 Observation Diagnostic Implication
.... 25.34 Observation Genotype
.... 25.35 Observation Panel
.... 25.36 Observation Therapeutic Implication
.... 25.37 Observation Variant
.... 25.38 OperationOutcome
.... 25.39 Organization
.... 25.40 Patient
.... 25.41 Practitioner
.... 25.42 PractitionerRole
.... 25.43 Procedure Genomic Study
.... 25.44 Questionnaire
.... 25.45 QuestionnaireResponse
.... 25.46 ServiceRequest
.... 25.47 Specimen
.... 25.48 Task
.... 25.49 Accession Number
.... 25.50 Attachment
.... 25.51 CodeableReference
.... 25.52 Correlation Identifier
.... 25.53 Filler Order Number
.... 25.54 Genomics Pedigree Number
.... 25.55 Hospital Provider Spell Identifier
.... 25.56 Medical Record Number
.... 25.57 NHS Number
.... 25.58 Organisation Code
.... 25.59 Organisation Site Identifier
.... 25.60 Placer Group Number
.... 25.61 Placer Order Number
.... 25.62 Practitioner Identifier
.... 25.63 Report Number
.... 25.64 Shipment Tracking Number
.... 25.65 DiagnosticReport procedure
.... 25.66 ExtCodeableReference
.... 25.67 Admission Method
.... 25.68 Admission Source
.... 25.69 Discharge Destination
.... 25.70 Discharge Disposition
.... 25.71 DocumentEntry Class
.... 25.72 DocumentEntry mimeType
.... 25.73 DocumentEntry Type
.... 25.74 Ethnicity
.... 25.75 Facility Type
.... 25.76 Genomic Cancer Test Directory
.... 25.77 Genomic Clinical Indication Codes
.... 25.78 Genomic Rare and Inherited Disease Test Directory
.... 25.79 Genomic Test Codes
.... 25.80 Genomic Test Outcome Codes
.... 25.81 NW IdentifierType
.... 25.82 Order Category
.... 25.83 Patient Encounter Trigger
.... 25.84 Patient Identity Trigger
.... 25.85 Practitioner Identifiers
.... 25.86 Request Priority
.... 25.87 Service
.... 25.88 Specialty
.... 25.89 Specimen Type
.... 25.90 Yes/No
.... 25.91 Yes/No/Unknown
.... 25.92 MFT EPIC Question Ids
.... 25.93 NHS England Genomic Clinical Indication Code
.... 25.94 NHS England Genomic Test Code
.... 25.95 NHS England Genomic Test Outcome Code
.... 25.96 NW GMSA Codes
.... 25.97 UK Professional License
.... 25.98 GMC Number
.... 25.99 GMP Number
.... 25.100 NHS Number
.... 25.101 ODS Code
.... 25.102 ODS Site Code
.... 25.103 LOINC to SNOMED UK edition
.... 25.104 SNOMED LOINC edition to SNOMED UK edition
.... 25.105 Clinical and Genomic Workflow
.... 25.106 Collect Specimen - Biopsy Procedure for obtaining a specimen, part of a diagnostic pathway. Day case admission.
.... 25.107 Genomic Test Order Process including order entry and transmission of the order
.... 25.108 Genomic Test Report Process
.... 25.109 Bundle 'Event Message' - Patient Update
.... 25.110 Bundle 'Message' - Genomics Order Reply
.... 25.111 Bundle 'Message' - Genomics Order Reply Acknowledgement
.... 25.112 Bundle 'Transaction' - Genomics Order Asynchronous Message Reply Acknowledgement
.... 25.113 Bundle - Conditions for a Patient QEDm
.... 25.114 Bundle - Form Search Results SDC
.... 25.115 Bundle - Genomic Diagnostic Implication for a Patient QEDm
.... 25.116 Bundle - Genomic Variant for a Patient QEDm
.... 25.117 Bundle - Genomic Variant Gene = NTHL1 QEDm
.... 25.118 Bundle - Patient Search Results by Medical Record Number PDQ
.... 25.119 Bundle - Patient Search Results by NHS Number PDQ
.... 25.120 Condition - Carcinoma
.... 25.121 Condition - Lynch Syndrome
.... 25.122 Consanguinity (type=CE)
.... 25.123 FamilyMemberHistory - Ricky LEEDS
.... 25.124 FamilyMemberHistory - Sarah-Jane Nottingham
.... 25.125 Genomic Order Entry Optional Questions
.... 25.126 Genomic Report BRCA1 Variant Example
.... 25.127 Genomic Report Ovarian Carcinoma Diagnostic Implication Example
.... 25.128 MCV - Mean corpuscular volume
.... 25.129 Message Header - Genomic Order Reply fatal
.... 25.130 Message Header - Genomic Order Reply fatal Acknowledgement
.... 25.131 Message Header - Genomic Order Reply Transient
.... 25.132 Message Header - Genomic Report
.... 25.133 Message Header - Patient
.... 25.134 Order Tracking Number (type=ST)
.... 25.135 Organization MANCHESTER UNIVERSITY NHS FOUNDATION TRUST
.... 25.136 Organization North West GMSA
.... 25.137 Output from a FHIR Validation
.... 25.138 Parameters Expansion Profile
.... 25.139 Patient - Liam Manchester NHS Number: 9012345678
.... 25.140 Patient - Paul Liverpool NHS Number: 9876543210
.... 25.141 Patient - Ricky Leeds NHS Number: 9321087654
.... 25.142 PractitionerRole Result INTERPRETER
.... 25.143 Pregnancy Expected Delivery Date (type=DT)
.... 25.144 Procedure - Liver Biopsy
.... 25.145 Task Genomic Test Completed
.... 25.146 Task Genomic Test Requested
.... 25.147 Binary Genomic Record of Discussion Example
.... 25.148 Bundle 'Message' - Genomics Order Reply
.... 25.149 Bundle 'Message' - Genomics Order with Attachment
.... 25.150 Bundle 'Message' - Genomics Order with Coded Entries
.... 25.151 Bundle 'SearchSet' - Genomics Order
.... 25.152 Document Reference Laboratory Order
.... 25.153 Encounter 'episode/stay' Example
.... 25.154 Message Header - Genomic Order
.... 25.155 Message Header - Genomic Order Reply ok
.... 25.156 Patient - OctaviaCHISLETT NHS Number: 9449305552
.... 25.157 PractitionerRole C3456789 Example
.... 25.158 ServiceRequest Attachment Example
.... 25.159 ServiceRequest Coded Entries Example
.... 25.160 Specimen Example
.... 25.161 Binary Genomic Report Example
.... 25.162 Bundle 'Message' - Genomics Report
.... 25.163 Diagnostic Report Example.
.... 25.164 Document Reference Laboratory Report
.... 25.165 Message Header - Genomic Report
.... 25.166 DiagnosticImplication - Cystic Fibrosis Carrier
.... 25.167 DiagnosticImplication - Lynch Syndrome
.... 25.168 Genomic Study - Cystic Fibrosis
.... 25.169 Genomic Study - Lynch Syndrome
.... 25.170 Variant - CFTR
.... 25.171 Variant - NTHL1
.... 25.172 Bundle `Document` - Genetic Report
.... 25.173 Composition - Genomics Report Octavia CHISLETT
.... 25.174 EPIC-OBR-1 Example
.... 25.175 EPIC-OBX-10 Example
.... 25.176 EPIC-OBX-11 Example
.... 25.177 EPIC-OBX-2 Example
.... 25.178 EPIC-OBX-4 Example
.... 25.179 EPIC-OBX-6 Example
.... 25.180 EPIC-OBX-7 Example
.... 25.181 EPIC-OBX-8 Example
.... 25.182 Genomic Referral Category
.... 25.183 High infection risk sample
.... 25.184 Informed Consent
.... 25.185 OBX Pregnancy
.... 25.186 Supervising Clinician
.... 25.187 Bundle-Bundle-NonWGSTestOrderForm-Reanalysis-Example
.... 25.188 Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example
.... 25.189 Bundle-NonWGSTestOrderForm-FetalScenario-Example
.... 25.190 837d78a0-30cd-478c-83a8-f83d16fc4443