NHS North West Genomics
0.2.1 - ci-build United Kingdom flag

NHS North West Genomics, published by NHS North West Genomics. This guide is not an authorized publication; it is the continuous build for version 0.2.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/nw-gmsa.github.com/ and changes regularly. See the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Business Analysis
... 3 Laboratory Testing Workflow (LTW)
... 4 Patient Administration (PAM)
... 5 Healthcare Provider Directory (HPD)
... 6 Health Information Exchange (HIE)
... 7 Placer Order Management [LAB-1]
... 8 Filler Order Management [LAB-2]
... 9 Order Results Management [LAB-3]
... 10 Work Order Management [LAB-4]
... 11 Test Results Management [LAB-5]
... 12 Query Existing Data [QEDm]
... 13 Mobile Access to Health Documents [MHD]
... 14 Patient Demographics Query for Mobile (PDQm)
... 15 Overview
... 16 HL7 v2 Standards
... 17 Architecture
... 18 Testing
... 19 Support
... 20 Authorisation (OAuth2)
... 21 Deployment
... 22 OAuth2
... 23 Workflow/Interaction Options
... 24 Report Options
... 25 Identifiers and Codes
... 26 Data Contracts and Issue Reporting
... 27 Care Services Discovery
... 28 Specimen Event Tracking (SET)
... 29 Inter Laboratory Workflow (ILW)
... 30 Simple
... 31 Digital Consent (IHE BPPC and PCF)
... 32 Design
... 33 Artifacts Summary
.... 33.1 Automation Manager
.... 33.2 Clinical Document
.... 33.3 Intermediary
.... 33.4 Order Filler
.... 33.5 Order Placer
.... 33.6 Order Result Tracker
.... 33.7 Patient Identity Source
.... 33.8 Provider Information Source
.... 33.9 CapabilityStatement for NW GMSA Clinical Data Repository
.... 33.10 CapabilityStatement for NW GMSA Regional Integration Engine for Genomics
.... 33.11 Process Message
.... 33.12 Message Definition - Laboratory Order
.... 33.13 Message Definition - Patient Encounter
.... 33.14 Message Definition - Patient Identity
.... 33.15 Message Definition - Unsolicited Observation
.... 33.16 assigner
.... 33.17 CBC panel - Blood by Automated count
.... 33.18 Comprehensive metabolic 2000 panel - Serum or Plasma
.... 33.19 Master HL7 genetic variant reporting panel
.... 33.20 North West Genomics Test Order
.... 33.21 North West Genomics Test Order Future
.... 33.22 North West Genomics Test Report
.... 33.23 Pedigree
.... 33.24 AuditEvent
.... 33.25 Binary
.... 33.26 Composition Genomic Report
.... 33.27 Condition
.... 33.28 Diagnostic Implication (Observation)
.... 33.29 Diagnostic Report
.... 33.30 DocumentReference
.... 33.31 Encounter
.... 33.32 Event
.... 33.33 FamilyMemberHistory
.... 33.34 Genomic Study (Observation Panel)
.... 33.35 Genomic Study (Procedure)
.... 33.36 Genotype (Observation)
.... 33.37 Hospital Spell
.... 33.38 MessageHeader
.... 33.39 Observation
.... 33.40 Observation Panel
.... 33.41 OperationOutcome
.... 33.42 Organization
.... 33.43 Patient
.... 33.44 Practitioner
.... 33.45 PractitionerRole
.... 33.46 Procedure
.... 33.47 Questionnaire
.... 33.48 QuestionnaireResponse
.... 33.49 RelatedPerson
.... 33.50 ServiceRequest
.... 33.51 Specimen
.... 33.52 Task
.... 33.53 Therapeutic Implication (Observation)
.... 33.54 Variant (Observation)
.... 33.55 Visit
.... 33.56 Attachment
.... 33.57 CodeableReference
.... 33.58 Correlation Identifier
.... 33.59 Genomics Pedigree Number
.... 33.60 GS1 Global Service Relation Number (GSRN)
.... 33.61 GS1 Serial Shipping Container Code (SSCC)
.... 33.62 GS1 Service Relation Instance Number (SRIN)
.... 33.63 Hospital Provider Spell Identifier
.... 33.64 Medical Record Number
.... 33.65 NHS Identifier
.... 33.66 Order Group Number
.... 33.67 Order Identifier
.... 33.68 Organisation Code
.... 33.69 Organisation Site Identifier
.... 33.70 Practitioner Identifier
.... 33.71 Report Identifier
.... 33.72 Shipment Tracking Number
.... 33.73 Specimen Accession Number
.... 33.74 Visit Number
.... 33.75 ExtCodeableReference
.... 33.76 Admission Method
.... 33.77 Admission Source
.... 33.78 Discharge Destination
.... 33.79 Discharge Disposition
.... 33.80 DocumentEntry Class
.... 33.81 DocumentEntry mimeType
.... 33.82 DocumentEntry Type
.... 33.83 Ethnicity
.... 33.84 Facility Type
.... 33.85 Genomic Cancer Test Directory
.... 33.86 Genomic Clinical Indication Codes
.... 33.87 Genomic Disorder Carrier
.... 33.88 Genomic Finding
.... 33.89 Genomic Finding Detected
.... 33.90 Genomic Rare and Inherited Disease Test Directory
.... 33.91 Genomic Test Codes
.... 33.92 Genomic Test Outcome Codes
.... 33.93 NW IdentifierType
.... 33.94 Order Category
.... 33.95 Organisation Cheshire and Merseyside ICS (QYG) NHS Trusts
.... 33.96 Organisation Greater Manchester ICS (QOP) NHS Trusts
.... 33.97 Organisation Lancashire and South Cumbria ICS (QE1) NHS Trusts
.... 33.98 Organisation North West Region NHS Trusts
.... 33.99 Patient Encounter Trigger
.... 33.100 Patient Identity Trigger
.... 33.101 Practitioner Identifiers
.... 33.102 Pregnancy
.... 33.103 Request Priority
.... 33.104 Service
.... 33.105 Specialty
.... 33.106 Specimen Tracking Events
.... 33.107 Specimen Type
.... 33.108 UK National Health Identifiers
.... 33.109 Yes/No
.... 33.110 Yes/No/Unknown
.... 33.111 iGene Codes
.... 33.112 iGene Test Codes
.... 33.113 MFT EPIC Question Ids
.... 33.114 NHS England Genomic Clinical Indication Code
.... 33.115 NHS England Genomic Test Code
.... 33.116 NHS England Genomic Test Outcome Code
.... 33.117 NW GMSA Codes
.... 33.118 UK National Health Identifiers
.... 33.119 UK Professional License
.... 33.120 GMC Number
.... 33.121 GMP Number
.... 33.122 NHS Number
.... 33.123 ODS Code
.... 33.124 ODS Site Code
.... 33.125 LOINC to SNOMED UK edition
.... 33.126 Sample Type (SNOMED) to iGene Specimen Type
.... 33.127 SNOMED LOINC edition to SNOMED UK edition
.... 33.128 Clinical and Genomic Workflow
.... 33.129 Collect Specimen - Biopsy Procedure for obtaining a specimen, part of a diagnostic pathway. Day case admission.
.... 33.130 Genomic Test Order Process including order entry and transmission of the order
.... 33.131 Genomic Test Report Process
.... 33.132 Bundle 'Event Message' - Patient Update
.... 33.133 Bundle 'Message' - Genomics Order Reply
.... 33.134 Bundle 'Message' - Genomics Order Reply Acknowledgement
.... 33.135 Bundle 'Transaction' - Genomics Order Asynchronous Message Reply Acknowledgement
.... 33.136 Bundle - Conditions for a Patient QEDm
.... 33.137 Bundle - Form Search Results SDC
.... 33.138 Bundle - Genomic Diagnostic Implication for a Patient QEDm
.... 33.139 Bundle - Genomic Variant for a Patient QEDm
.... 33.140 Bundle - Genomic Variant Gene = NTHL1 QEDm
.... 33.141 Bundle - Patient Search Results by Medical Record Number PDQ
.... 33.142 Bundle - Patient Search Results by NHS Number PDQ
.... 33.143 Condition - Carcinoma
.... 33.144 Condition - Lynch Syndrome
.... 33.145 Consanguinity (type=CE)
.... 33.146 FamilyMemberHistory - Ricky LEEDS
.... 33.147 FamilyMemberHistory - Sarah-Jane Nottingham
.... 33.148 Genomic Order Entry Optional Questions
.... 33.149 Genomic Report BRCA1 Variant Example
.... 33.150 Genomic Report Ovarian Carcinoma Diagnostic Implication Example
.... 33.151 Genomic Study (Panel) - Cystic Fibrosis
.... 33.152 Genomic Study (Panel) - Lynch Syndrome
.... 33.153 MCV - Mean corpuscular volume
.... 33.154 Message Header - Genomic Order Reply fatal
.... 33.155 Message Header - Genomic Order Reply fatal Acknowledgement
.... 33.156 Message Header - Genomic Order Reply Transient
.... 33.157 Message Header - Genomic Report
.... 33.158 Message Header - Patient
.... 33.159 Observation - Lynch Syndrome Mutation Finding
.... 33.160 Order Tracking Number (type=ST)
.... 33.161 Organization MANCHESTER UNIVERSITY NHS FOUNDATION TRUST
.... 33.162 Organization North West GMSA
.... 33.163 Output from a FHIR Validation
.... 33.164 Parameters Expansion Profile
.... 33.165 Patient - Birmingham
.... 33.166 Patient - Bolton
.... 33.167 Patient - Congleton
.... 33.168 Patient - Fetus London
.... 33.169 Patient - Lancaster
.... 33.170 Patient - London
.... 33.171 Patient - Ned Liverpool NHS Number: 9737383206
.... 33.172 Patient - Northwich
.... 33.173 Patient - Nottingham
.... 33.174 Patient - Rob Leeds NHS Number: 9737383222
.... 33.175 Patient - Sansa Manchester NHS Number: 9737383192
.... 33.176 Patient - Warrington
.... 33.177 Patient - Wrexham
.... 33.178 PractitionerRole Result INTERPRETER
.... 33.179 Pregnancy Expected Delivery Date (type=DT)
.... 33.180 Procedure - Liver Biopsy
.... 33.181 RelatedPerson Birmingham-Lancaster
.... 33.182 RelatedPerson Birmingham-London
.... 33.183 RelatedPerson Lancaster-London
.... 33.184 RelatedPerson London-Lancaster
.... 33.185 RelatedPerson Mother Cersei London
.... 33.186 RelatedPerson Wrexham-Lancaster
.... 33.187 RelatedPerson Wrexham-London
.... 33.188 Task Genomic Test Completed
.... 33.189 Task Genomic Test Requested
.... 33.190 Binary Genomic Record of Discussion Example
.... 33.191 Bundle 'Message' - Genomics Order Reply
.... 33.192 Bundle 'Message' - Genomics Order with Attachment
.... 33.193 Bundle 'Message' - Genomics Order with Coded Entries
.... 33.194 Bundle 'SearchSet' - Genomics Order
.... 33.195 Document Reference Laboratory Order
.... 33.196 Encounter 'episode/stay' Example
.... 33.197 Message Header - Genomic Order
.... 33.198 Message Header - Genomic Order Reply ok
.... 33.199 Patient - OctaviaCHISLETT NHS Number: 9449305552
.... 33.200 PractitionerRole C3456789 Example
.... 33.201 ServiceRequest Attachment Example
.... 33.202 ServiceRequest Coded Entries Example
.... 33.203 Specimen Example
.... 33.204 Binary Genomic Report Example
.... 33.205 Bundle 'Message' - Genomics Report
.... 33.206 Diagnostic Report Example.
.... 33.207 Document Reference Laboratory Report
.... 33.208 Message Header - Genomic Report
.... 33.209 DiagnosticImplication - Cystic Fibrosis Carrier
.... 33.210 DiagnosticImplication - Lynch Syndrome
.... 33.211 Genomic Study - Cystic Fibrosis
.... 33.212 Genomic Study - Lynch Syndrome
.... 33.213 Variant - CFTR
.... 33.214 Variant - NTHL1
.... 33.215 748683741
.... 33.216 Bundle `Document` - Genetic Report
.... 33.217 Composition - Genomics Report Octavia CHISLETT
.... 33.218 EPIC-OBR-1 Example
.... 33.219 EPIC-OBX-10 Example
.... 33.220 EPIC-OBX-11 Example
.... 33.221 EPIC-OBX-2 Example
.... 33.222 EPIC-OBX-4 Example
.... 33.223 EPIC-OBX-6 Example
.... 33.224 EPIC-OBX-7 Example
.... 33.225 EPIC-OBX-8 Example
.... 33.226 Genomic Referral Category
.... 33.227 High infection risk sample
.... 33.228 Informed Consent
.... 33.229 OBX Pregnancy
.... 33.230 Supervising Clinician
.... 33.231 Bundle-Bundle-NonWGSTestOrderForm-Reanalysis-Example
.... 33.232 Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example
.... 33.233 Bundle-NonWGSTestOrderForm-FetalScenario-Example
.... 33.234 NRL Genomic Report for Cersei LONDON (Test NHS Number 9737383230). Original order electronic from EPIC system
.... 33.235 NRL Genomic Report for Tommen BIRMINGHAM (Test NHS Number 9737383249). Original order not electronic
.... 33.236 837d78a0-30cd-478c-83a8-f83d16fc4443