NHS North West Genomics
2.0.3 - ci-build United Kingdom flag

NHS North West Genomics, published by NHS North West Genomics. This guide is not an authorized publication; it is the continuous build for version 2.0.3 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/nw-gmsa.github.com/ and changes regularly. See the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Business Analysis
... 3 Laboratory Testing Workflow (LTW)
... 4 Health Data API (HIE/EURDICE)
... 5 Patient Administration (PAM)
... 6 Laboratory Specimen Barcode Labeling (LBL)
... 7 Healthcare Provider Directory (HPD)
... 8 Genomic Archiving and Communication System (GACS)
... 9 Health Document Sharing (MHDS) and Sharing Laboratory Reports (XD-LAB)
... 10 Placer Order Management [LAB-1]
... 11 Filler Order Management [LAB-2]
... 12 Order Results Management [LAB-3]
... 13 Work Order Management [LAB-4]
... 14 Test Results Management [LAB-5]
... 15 Resource Access [IPA/QEDm]
... 16 Message Exchange [MQ]
... 17 Document Exchange [MHD]
... 18 Document Exchange [MHD] Elaboration
... 19 Patient Identity Matching (PDQm)
... 20 Overview
... 21 HL7 v2 Standards
... 22 Architecture
... 23 Testing
... 24 Support
... 25 API Security
... 26 Deployment
... 27 Delivery Overview
... 28 Authorisation [IUA]
... 29 Workflow/Interaction Options
... 30 Genomic Report Sharing Options
... 31 Identifiers and Codes
... 32 Overview - Data Contracts
... 33 Care Services Discovery
... 34 Specimen Event Tracking (SET)
... 35 Inter Laboratory Workflow (ILW)
... 36 Simple
... 37 Digital Consent (IHE BPPC and PCF)
... 38 Design
... 39 Exchange
... 40 Artifacts Summary
.... 40.1 Automation Manager
.... 40.2 Clinical Document
.... 40.3 Intermediary
.... 40.4 Order Filler
.... 40.5 Order Placer
.... 40.6 Order Result Tracker
.... 40.7 Patient Identity Source
.... 40.8 Provider Information Source
.... 40.9 Requestor (ILW)
.... 40.10 Subcontractor (ILW)
.... 40.11 CapabilityStatement for NW Genomics Genomic Data Platform (EURIDICE Health Data API)
.... 40.12 CapabilityStatement for NW GMSA Regional Orchestration Engine for Genomics
.... 40.13 Process Message
.... 40.14 Message Definition - Acknowledgement
.... 40.15 Message Definition - Document and Document Notification
.... 40.16 Message Definition - Laboratory Order
.... 40.17 Message Definition - Unsolicited Observation
.... 40.18 assigner
.... 40.19 CBC panel - Blood by Automated count
.... 40.20 Comprehensive metabolic 2000 panel - Serum or Plasma
.... 40.21 Master HL7 genetic variant reporting panel
.... 40.22 North West Genomics Test Order
.... 40.23 North West Genomics Test Order Future
.... 40.24 North West Genomics Test Report
.... 40.25 Pedigree
.... 40.26 AuditEvent
.... 40.27 Binary
.... 40.28 Composition Genomic Report
.... 40.29 Condition
.... 40.30 Diagnostic Implication (Observation)
.... 40.31 Diagnostic Report
.... 40.32 Document Message (MessageHeader)
.... 40.33 DocumentReference
.... 40.34 Encounter
.... 40.35 Event Notification (MessageHeader)
.... 40.36 FamilyMemberHistory
.... 40.37 Genomic Observation
.... 40.38 Genomic Study (Observation Panel)
.... 40.39 Genomic Study (Procedure)
.... 40.40 Genotype (Observation)
.... 40.41 Hospital Spell
.... 40.42 Laboratory Analyte Result (Observation)
.... 40.43 Molecular Biomarker
.... 40.44 Observation
.... 40.45 Observation Panel
.... 40.46 OperationOutcome
.... 40.47 Organization
.... 40.48 Patient
.... 40.49 Practitioner
.... 40.50 PractitionerRole
.... 40.51 Procedure
.... 40.52 Questionnaire
.... 40.53 QuestionnaireResponse
.... 40.54 RelatedPerson
.... 40.55 ServiceRequest
.... 40.56 Specimen
.... 40.57 Task
.... 40.58 Therapeutic Implication (Observation)
.... 40.59 Variant (Observation)
.... 40.60 Visit
.... 40.61 WorkOrder
.... 40.62 Attachment
.... 40.63 CodeableReference
.... 40.64 Correlation Identifier
.... 40.65 Genomics Pedigree Number
.... 40.66 GS1 Global Service Relation Number (GSRN)
.... 40.67 GS1 Serial Shipping Container Code (SSCC)
.... 40.68 GS1 Service Relation Instance Number (SRIN)
.... 40.69 Hospital Provider Spell Identifier
.... 40.70 Medical Record Number
.... 40.71 NHS Identifier
.... 40.72 Order Group Number
.... 40.73 Order Identifier
.... 40.74 Organisation Code
.... 40.75 Organisation Site Identifier
.... 40.76 Practitioner Identifier
.... 40.77 Report Identifier
.... 40.78 Shipment Tracking Number
.... 40.79 Specimen Accession Number
.... 40.80 Visit Number
.... 40.81 ExtCodeableReference
.... 40.82 Admission Method
.... 40.83 Admission Source
.... 40.84 Discharge Destination
.... 40.85 Discharge Disposition
.... 40.86 DocumentEntry Class
.... 40.87 DocumentEntry mimeType
.... 40.88 DocumentEntry Type
.... 40.89 Ethnicity
.... 40.90 Facility Type
.... 40.91 Genomic Cancer Test Directory
.... 40.92 Genomic Clinical Indication Codes
.... 40.93 Genomic Disorder Carrier
.... 40.94 Genomic Finding
.... 40.95 Genomic Finding Detected
.... 40.96 Genomic Rare and Inherited Disease Test Directory
.... 40.97 Genomic Test Codes
.... 40.98 Genomic Test Outcome Codes
.... 40.99 NW IdentifierType
.... 40.100 Order Category
.... 40.101 Organisation Cheshire and Merseyside ICS (QYG) NHS Trusts
.... 40.102 Organisation Greater Manchester ICS (QOP) NHS Trusts
.... 40.103 Organisation Lancashire and South Cumbria ICS (QE1) NHS Trusts
.... 40.104 Organisation North West Region NHS Trusts
.... 40.105 Patient Encounter Trigger
.... 40.106 Patient Identity Trigger
.... 40.107 Practitioner Identifiers
.... 40.108 Pregnancy
.... 40.109 Request Priority
.... 40.110 Service
.... 40.111 Specialty
.... 40.112 Specimen Body Site
.... 40.113 Specimen Tracking Events
.... 40.114 Specimen Type
.... 40.115 UK National Health Identifiers
.... 40.116 Yes/No
.... 40.117 Yes/No/Unknown
.... 40.118 iGene Codes
.... 40.119 iGene Sample Sub Type
.... 40.120 iGene Test Codes
.... 40.121 MFT EPIC Question Ids
.... 40.122 NHS England Genomic Clinical Indication Code
.... 40.123 NHS England Genomic Test Code
.... 40.124 NHS England Genomic Test Outcome Code
.... 40.125 NW GMSA Codes
.... 40.126 UK National Health Identifiers
.... 40.127 UK Professional License
.... 40.128 GMC Number
.... 40.129 GMP Number
.... 40.130 NHS Number
.... 40.131 ODS Code
.... 40.132 ODS Site Code
.... 40.133 LOINC to SNOMED UK edition
.... 40.134 Sample Body Site (SNOMED) to iGene Specimen Sub Type
.... 40.135 Sample Type (SNOMED) to iGene Specimen Type
.... 40.136 SNOMED LOINC edition to SNOMED UK edition
.... 40.137 Clinical and Genomic Workflow
.... 40.138 Collect Specimen - Biopsy Procedure for obtaining a specimen, part of a diagnostic pathway. Day case admission.
.... 40.139 Genomic Test Order Process including order entry and transmission of the order
.... 40.140 Genomic Test Report Process
.... 40.141 AuditEvent Mobile Query Existing Data [PCC-44]
.... 40.142 AuditEvent Placer Order Management [LAB-1] V2/FHIR/V2 Order
.... 40.143 Bundle 'Event Message' - Patient Update
.... 40.144 Bundle 'Message' - Genomics Order Reply
.... 40.145 Bundle 'Message' - Genomics Order Reply Acknowledgement
.... 40.146 Bundle 'Transaction' - Genomics Order Asynchronous Message Reply Acknowledgement
.... 40.147 Bundle - Conditions for a Patient QEDm
.... 40.148 Bundle - Form Search Results SDC
.... 40.149 Bundle - Genomic Diagnostic Implication for a Patient QEDm
.... 40.150 Bundle - Genomic Variant for a Patient QEDm
.... 40.151 Bundle - Genomic Variant Gene = NTHL1 QEDm
.... 40.152 Bundle - Patient Search Results by Medical Record Number PDQ
.... 40.153 Bundle - Patient Search Results by NHS Number PDQ
.... 40.154 Condition - Carcinoma
.... 40.155 Condition - Lynch Syndrome
.... 40.156 Consanguinity (type=CE)
.... 40.157 Example Document and Document Notification Message
.... 40.158 Example of a Message Acknowledgement
.... 40.159 Example of a Message Search
.... 40.160 FamilyMemberHistory - Ricky LEEDS
.... 40.161 FamilyMemberHistory - Sarah-Jane Nottingham
.... 40.162 FHIR RESTful POST ServiceRequest
.... 40.163 Genomic Order Entry Optional Questions
.... 40.164 Genomic Report BRCA1 Variant Example
.... 40.165 Genomic Report Ovarian Carcinoma Diagnostic Implication Example
.... 40.166 Genomic Study (Panel) - Cystic Fibrosis
.... 40.167 Genomic Study (Panel) - Lynch Syndrome
.... 40.168 Laboratory Analyte Result BCRABL Invalid Example
.... 40.169 Laboratory Analyte Result BCRABL Valid Example
.... 40.170 MCV - Mean corpuscular volume
.... 40.171 Message Header - Genomic Order Reply fatal
.... 40.172 Message Header - Genomic Order Reply fatal Acknowledgement
.... 40.173 Message Header - Genomic Order Reply Transient
.... 40.174 Message Header - Genomic Report
.... 40.175 Message Header - Patient
.... 40.176 Observation - Lynch Syndrome Mutation Finding
.... 40.177 Order Tracking Number (type=ST)
.... 40.178 Organization MANCHESTER UNIVERSITY NHS FOUNDATION TRUST
.... 40.179 Organization North West GMSA
.... 40.180 Output from a FHIR Validation
.... 40.181 Parameters Expansion Profile
.... 40.182 Patient - Birmingham
.... 40.183 Patient - Bolton
.... 40.184 Patient - Congleton
.... 40.185 Patient - Fetus London
.... 40.186 Patient - Lancaster
.... 40.187 Patient - London
.... 40.188 Patient - Ned Liverpool NHS Number: 9737383206
.... 40.189 Patient - Northwich
.... 40.190 Patient - Nottingham
.... 40.191 Patient - Rob Leeds NHS Number: 9737383222
.... 40.192 Patient - Sansa Manchester NHS Number: 9737383192
.... 40.193 Patient - Warrington
.... 40.194 Patient - Wrexham
.... 40.195 PractitionerRole Result INTERPRETER
.... 40.196 Pregnancy Expected Delivery Date (type=DT)
.... 40.197 Procedure - Liver Biopsy
.... 40.198 RelatedPerson Birmingham-Lancaster
.... 40.199 RelatedPerson Birmingham-London
.... 40.200 RelatedPerson Lancaster-London
.... 40.201 RelatedPerson London-Lancaster
.... 40.202 RelatedPerson Mother Cersei London
.... 40.203 RelatedPerson Wrexham-Lancaster
.... 40.204 RelatedPerson Wrexham-London
.... 40.205 Task Genomic Test Completed
.... 40.206 Task Genomic Test Requested
.... 40.207 Binary Genomic Record of Discussion Example
.... 40.208 Bundle 'Message' - Genomics Order Reply
.... 40.209 Bundle 'Message' - Genomics Order with Attachment
.... 40.210 Bundle 'Message' - Genomics Order with Coded Entries
.... 40.211 Bundle 'SearchSet' - Genomics Order
.... 40.212 Document Reference Laboratory Order
.... 40.213 Encounter 'episode/stay' Example
.... 40.214 Message Header - Genomic Order
.... 40.215 Message Header - Genomic Order Reply ok
.... 40.216 Patient - OctaviaCHISLETT NHS Number: 9449305552
.... 40.217 PractitionerRole C3456789 Example
.... 40.218 ServiceRequest Attachment Example
.... 40.219 ServiceRequest Coded Entries Example
.... 40.220 Specimen Example
.... 40.221 Binary Genomic Report Example
.... 40.222 Bundle 'Message' - Genomics Report
.... 40.223 Diagnostic Report Example.
.... 40.224 Document Reference Laboratory Report
.... 40.225 Message Header - Genomic Report
.... 40.226 DiagnosticImplication - Cystic Fibrosis Carrier
.... 40.227 DiagnosticImplication - Lynch Syndrome
.... 40.228 Genomic Study - Cystic Fibrosis
.... 40.229 Genomic Study - Lynch Syndrome
.... 40.230 Variant - CFTR
.... 40.231 Variant - NTHL1
.... 40.232 748683741
.... 40.233 Bundle `Document` - Genetic Report
.... 40.234 Composition - Genomics Report Octavia CHISLETT
.... 40.235 EPIC-OBR-1 Example
.... 40.236 EPIC-OBX-10 Example
.... 40.237 EPIC-OBX-11 Example
.... 40.238 EPIC-OBX-2 Example
.... 40.239 EPIC-OBX-4 Example
.... 40.240 EPIC-OBX-6 Example
.... 40.241 EPIC-OBX-7 Example
.... 40.242 EPIC-OBX-8 Example
.... 40.243 Genomic Referral Category
.... 40.244 High infection risk sample
.... 40.245 Informed Consent
.... 40.246 OBX Pregnancy
.... 40.247 Supervising Clinician
.... 40.248 Bundle-Bundle-NonWGSTestOrderForm-Reanalysis-Example
.... 40.249 Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example
.... 40.250 Bundle-NonWGSTestOrderForm-FetalScenario-Example
.... 40.251 NRL Genomic Report for Cersei LONDON (Test NHS Number 9737383230). Original order electronic from EPIC system
.... 40.252 NRL Genomic Report for Tommen BIRMINGHAM (Test NHS Number 9737383249). Original order not electronic
.... 40.253 837d78a0-30cd-478c-83a8-f83d16fc4443