NHS North West Genomics
0.1.0 - ci-build United Kingdom flag

NHS North West Genomics, published by NHS North West Genomics. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/nw-gmsa.github.com/ and changes regularly. See the Directory of published versions

Table of Contents

.. 0 Table of Contents
... 1 Home
... 2 Introduction
... 3 Laboratory Testing Workflow (LTW)
... 4 Patient Administration (PAM)
... 5 Healthcare Provider Directory (HPD)
... 6 Health Information Exchange (HIE)
... 7 Placer Order Management [LAB-1]
... 8 Filler Order Management [LAB-2]
... 9 Order Results Management [LAB-3]
... 10 Work Order Management [LAB-4]
... 11 Test Results Management [LAB-5]
... 12 Query Existing Data [QEDm]
... 13 Mobile Access to Health Documents [MHD]
... 14 Patient Demographics Query for Mobile (PDQm)
... 15 Overview
... 16 HL7 v2 Artefacts
... 17 Architecture
... 18 Testing
... 19 Support
... 20 Authorisation (OAuth2)
... 21 Deployment
... 22 OAuth2
... 23 Workflow/Interaction Options
... 24 Identifiers and Codes
... 25 Data Contracts and Issue Reporting
... 26 Care Services Discovery
... 27 Specimen Event Tracking (SET)
... 28 Inter Laboratory Workflow (ILW)
... 29 Simple
... 30 Digital Consent (IHE BPPC and PCF)
... 31 Artifacts Summary
.... 31.1 Automation Manager
.... 31.2 Clinical Document
.... 31.3 Intermediary
.... 31.4 Order Filler
.... 31.5 Order Placer
.... 31.6 Order Result Tracker
.... 31.7 Patient Identity Source
.... 31.8 Provider Information Source
.... 31.9 CapabilityStatement for NW GMSA Clinical Data Repository
.... 31.10 CapabilityStatement for NW GMSA Regional Integration Engine for Genomics
.... 31.11 Process Message
.... 31.12 Message Definition - Laboratory Order
.... 31.13 Message Definition - Patient Encounter
.... 31.14 Message Definition - Patient Identity
.... 31.15 Message Definition - Unsolicited Observation
.... 31.16 assigner
.... 31.17 CBC panel - Blood by Automated count
.... 31.18 Comprehensive metabolic 2000 panel - Serum or Plasma
.... 31.19 Master HL7 genetic variant reporting panel
.... 31.20 North West Genomics Test Order
.... 31.21 North West Genomics Test Order Future
.... 31.22 North West Genomics Test Report
.... 31.23 Pedigree
.... 31.24 AuditEvent
.... 31.25 Binary
.... 31.26 Composition
.... 31.27 Composition Genomic Report
.... 31.28 Condition
.... 31.29 Diagnostic Report
.... 31.30 DocumentReference
.... 31.31 Encounter
.... 31.32 Event
.... 31.33 FamilyMemberHistory
.... 31.34 Hospital Spell
.... 31.35 MessageHeader
.... 31.36 Observation
.... 31.37 Observation Diagnostic Implication
.... 31.38 Observation Genotype
.... 31.39 Observation Panel
.... 31.40 Observation Therapeutic Implication
.... 31.41 Observation Variant
.... 31.42 OperationOutcome
.... 31.43 Organization
.... 31.44 Patient
.... 31.45 Practitioner
.... 31.46 PractitionerRole
.... 31.47 Procedure
.... 31.48 Procedure Genomic Study
.... 31.49 Questionnaire
.... 31.50 QuestionnaireResponse
.... 31.51 RelatedPerson
.... 31.52 ServiceRequest
.... 31.53 Specimen
.... 31.54 Task
.... 31.55 Visit
.... 31.56 Accession Number
.... 31.57 Attachment
.... 31.58 CodeableReference
.... 31.59 Correlation Identifier
.... 31.60 Genomics Pedigree Number
.... 31.61 Hospital Provider Spell Identifier
.... 31.62 Medical Record Number
.... 31.63 NHS Number
.... 31.64 Order Filler Number
.... 31.65 Order Group Number
.... 31.66 Order Placer Number
.... 31.67 Organisation Code
.... 31.68 Organisation Site Identifier
.... 31.69 Practitioner Identifier
.... 31.70 Shipment Tracking Number
.... 31.71 Visit Number
.... 31.72 DiagnosticReport procedure
.... 31.73 ExtCodeableReference
.... 31.74 Admission Method
.... 31.75 Admission Source
.... 31.76 Discharge Destination
.... 31.77 Discharge Disposition
.... 31.78 DocumentEntry Class
.... 31.79 DocumentEntry mimeType
.... 31.80 DocumentEntry Type
.... 31.81 Ethnicity
.... 31.82 Facility Type
.... 31.83 Genomic Cancer Test Directory
.... 31.84 Genomic Clinical Indication Codes
.... 31.85 Genomic Disorder Carrier
.... 31.86 Genomic Finding
.... 31.87 Genomic Finding Detected
.... 31.88 Genomic Rare and Inherited Disease Test Directory
.... 31.89 Genomic Test Codes
.... 31.90 Genomic Test Outcome Codes
.... 31.91 NW IdentifierType
.... 31.92 Order Category
.... 31.93 Organisation Cheshire and Merseyside ICS (QYG) NHS Trusts
.... 31.94 Organisation Greater Manchester ICS (QOP) NHS Trusts
.... 31.95 Organisation Lancashire and South Cumbria ICS (QE1) NHS Trusts
.... 31.96 Organisation North West Region NHS Trusts
.... 31.97 Patient Encounter Trigger
.... 31.98 Patient Identity Trigger
.... 31.99 Practitioner Identifiers
.... 31.100 Pregnancy
.... 31.101 Request Priority
.... 31.102 Service
.... 31.103 Specialty
.... 31.104 Specimen Tracking Events
.... 31.105 Specimen Type
.... 31.106 UK National Health Identifiers
.... 31.107 Yes/No
.... 31.108 Yes/No/Unknown
.... 31.109 MFT EPIC Question Ids
.... 31.110 NHS England Genomic Clinical Indication Code
.... 31.111 NHS England Genomic Test Code
.... 31.112 NHS England Genomic Test Outcome Code
.... 31.113 NW GMSA Codes
.... 31.114 UK National Health Identifiers
.... 31.115 UK Professional License
.... 31.116 GMC Number
.... 31.117 GMP Number
.... 31.118 NHS Number
.... 31.119 ODS Code
.... 31.120 ODS Site Code
.... 31.121 LOINC to SNOMED UK edition
.... 31.122 SNOMED LOINC edition to SNOMED UK edition
.... 31.123 Clinical and Genomic Workflow
.... 31.124 Collect Specimen - Biopsy Procedure for obtaining a specimen, part of a diagnostic pathway. Day case admission.
.... 31.125 Genomic Test Order Process including order entry and transmission of the order
.... 31.126 Genomic Test Report Process
.... 31.127 Bundle 'Event Message' - Patient Update
.... 31.128 Bundle 'Message' - Genomics Order Reply
.... 31.129 Bundle 'Message' - Genomics Order Reply Acknowledgement
.... 31.130 Bundle 'Transaction' - Genomics Order Asynchronous Message Reply Acknowledgement
.... 31.131 Bundle - Conditions for a Patient QEDm
.... 31.132 Bundle - Form Search Results SDC
.... 31.133 Bundle - Genomic Diagnostic Implication for a Patient QEDm
.... 31.134 Bundle - Genomic Variant for a Patient QEDm
.... 31.135 Bundle - Genomic Variant Gene = NTHL1 QEDm
.... 31.136 Bundle - Patient Search Results by Medical Record Number PDQ
.... 31.137 Bundle - Patient Search Results by NHS Number PDQ
.... 31.138 Condition - Carcinoma
.... 31.139 Condition - Lynch Syndrome
.... 31.140 Consanguinity (type=CE)
.... 31.141 FamilyMemberHistory - Ricky LEEDS
.... 31.142 FamilyMemberHistory - Sarah-Jane Nottingham
.... 31.143 Genomic Order Entry Optional Questions
.... 31.144 Genomic Report BRCA1 Variant Example
.... 31.145 Genomic Report Ovarian Carcinoma Diagnostic Implication Example
.... 31.146 MCV - Mean corpuscular volume
.... 31.147 Message Header - Genomic Order Reply fatal
.... 31.148 Message Header - Genomic Order Reply fatal Acknowledgement
.... 31.149 Message Header - Genomic Order Reply Transient
.... 31.150 Message Header - Genomic Report
.... 31.151 Message Header - Patient
.... 31.152 Observation - Lynch Syndrome Mutation Finding
.... 31.153 Order Tracking Number (type=ST)
.... 31.154 Organization MANCHESTER UNIVERSITY NHS FOUNDATION TRUST
.... 31.155 Organization North West GMSA
.... 31.156 Output from a FHIR Validation
.... 31.157 Parameters Expansion Profile
.... 31.158 Patient - Birmingham
.... 31.159 Patient - Bolton
.... 31.160 Patient - Congleton
.... 31.161 Patient - Lancaster
.... 31.162 Patient - London
.... 31.163 Patient - Ned Liverpool NHS Number: 9737383206
.... 31.164 Patient - Northwich
.... 31.165 Patient - Nottingham
.... 31.166 Patient - Rob Leeds NHS Number: 9737383222
.... 31.167 Patient - Sansa Manchester NHS Number: 9737383192
.... 31.168 Patient - Warrington
.... 31.169 Patient - Wrexham
.... 31.170 PractitionerRole Result INTERPRETER
.... 31.171 Pregnancy Expected Delivery Date (type=DT)
.... 31.172 Procedure - Liver Biopsy
.... 31.173 RelatedPerson Birmingham-Lancaster
.... 31.174 RelatedPerson Birmingham-London
.... 31.175 RelatedPerson Lancaster-London
.... 31.176 RelatedPerson London-Lancaster
.... 31.177 RelatedPerson Wrexham-Lancaster
.... 31.178 RelatedPerson Wrexham-London
.... 31.179 Task Genomic Test Completed
.... 31.180 Task Genomic Test Requested
.... 31.181 Binary Genomic Record of Discussion Example
.... 31.182 Bundle 'Message' - Genomics Order Reply
.... 31.183 Bundle 'Message' - Genomics Order with Attachment
.... 31.184 Bundle 'Message' - Genomics Order with Coded Entries
.... 31.185 Bundle 'SearchSet' - Genomics Order
.... 31.186 Document Reference Laboratory Order
.... 31.187 Encounter 'episode/stay' Example
.... 31.188 Message Header - Genomic Order
.... 31.189 Message Header - Genomic Order Reply ok
.... 31.190 Patient - OctaviaCHISLETT NHS Number: 9449305552
.... 31.191 PractitionerRole C3456789 Example
.... 31.192 ServiceRequest Attachment Example
.... 31.193 ServiceRequest Coded Entries Example
.... 31.194 Specimen Example
.... 31.195 Binary Genomic Report Example
.... 31.196 Bundle 'Message' - Genomics Report
.... 31.197 Diagnostic Report Example.
.... 31.198 Document Reference Laboratory Report
.... 31.199 Message Header - Genomic Report
.... 31.200 DiagnosticImplication - Cystic Fibrosis Carrier
.... 31.201 DiagnosticImplication - Lynch Syndrome
.... 31.202 Genomic Study - Cystic Fibrosis
.... 31.203 Genomic Study - Lynch Syndrome
.... 31.204 Variant - CFTR
.... 31.205 Variant - NTHL1
.... 31.206 748683741
.... 31.207 Bundle `Document` - Genetic Report
.... 31.208 Composition - Genomics Report Octavia CHISLETT
.... 31.209 EPIC-OBR-1 Example
.... 31.210 EPIC-OBX-10 Example
.... 31.211 EPIC-OBX-11 Example
.... 31.212 EPIC-OBX-2 Example
.... 31.213 EPIC-OBX-4 Example
.... 31.214 EPIC-OBX-6 Example
.... 31.215 EPIC-OBX-7 Example
.... 31.216 EPIC-OBX-8 Example
.... 31.217 Genomic Referral Category
.... 31.218 High infection risk sample
.... 31.219 Informed Consent
.... 31.220 OBX Pregnancy
.... 31.221 Supervising Clinician
.... 31.222 Bundle-Bundle-NonWGSTestOrderForm-Reanalysis-Example
.... 31.223 Bundle-NonWGSTestOrderForm-CancerSolidTumor-Example
.... 31.224 Bundle-NonWGSTestOrderForm-FetalScenario-Example
.... 31.225 NRL Genomic Report for Cersei LONDON (Test NHS Number 9737383230). Original order electronic from EPIC system
.... 31.226 NRL Genomic Report for Tommen BIRMINGHAM (Test NHS Number 9737383249). Original order not electronic
.... 31.227 837d78a0-30cd-478c-83a8-f83d16fc4443