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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

Logical Model: Microbiology logical model

Official URL: https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/pc-microbiology-lm Version: 0.1.0-ci-build
Draft as of 2026-06-05 Computable Name: PcMicrobiology

Logical model for the PROTECT-CHILD microbiology table. Covers viral serology, DNA quantification, culture results, and BKVAN evidence.

Usages:

  • This Logical Model is not used by any profiles in this Specification

You can also check for usages in the FHIR IG Statistics

Formal Views of Profile Content

Description of Profiles, Differentials, Snapshots and how the different presentations work.

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. pc-microbiology-lm 0..* Base Microbiology logical model
... microbiologyId 1..1 string microbiology_id
... visitId 1..1 string visit_id
... donorId 0..1 string donor_id
... ebvDna 0..1 boolean ebv_dna
... ebvDnaCopies 0..1 decimal ebv_dna_copies
... ebvIgmAntiEa 0..1 boolean ebv_igm_anti_ea
... ebvIgmAntiVca 0..1 boolean ebv_igm_anti_vca
... ebvIggAntiVca 0..1 boolean ebv_igg_anti_vca
... ebvIggEbna 0..1 boolean ebv_igg_ebna
... cmvDna 0..1 boolean cmv_dna
... cmvDnaCopies 0..1 decimal cmv_dna_copies
... cmvIgm 0..1 boolean cmv_igm
... cmvIgg 0..1 boolean cmv_igg
... parvovirusB19Dna 0..1 boolean parvovirus_b19_dna
... parvovirusB19DnaCopies 0..1 decimal parvovirus_b19_dna_copies
... parvovirusB19Igg 0..1 boolean parvovirus_b19_igg
... parvovirusB19Igm 0..1 boolean parvovirus_b19_igm
... hsvIgg 0..1 boolean hsv_igg
... hsvIgm 0..1 boolean hsv_igm
... adenovirusIgg 0..1 boolean adenovirus_igg
... adenovirusIgm 0..1 boolean adenovirus_igm
... bloodAdenovirusDna 0..1 boolean blood_adenovirus_dna
... bloodAdenovirusDnaCopies 0..1 decimal blood_adenovirus_dna_copies
... vzvIgg 0..1 boolean vzv_igg
... vzvIgm 0..1 boolean vzv_igm
... bloodBkvDna 0..1 boolean blood_bkv_dna
... bloodBkvDnaCopies 0..1 decimal blood_bkv_dna_copies
... urineBkvDna 0..1 boolean urine_bkv_dna
... bkvDnaKidneyBiopsy 0..1 boolean bkv_dna_kidney_biopsy
... bkvFishKidneyBiopsy 0..1 boolean bkv_fish_kidney_biopsy
... bloodColture 0..1 boolean blood_colture
... urineColture 0..1 boolean urine_colture
... otherPositivity 0..1 string other_positivity
... ebvHepatitisLiver 0..1 boolean ebv_hepatitis_liver
... evidenceBkvan 0..1 code evidence_bkvan

doco Documentation for this format

This structure is derived from Base

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. pc-microbiology-lm 0..* Base Microbiology logical model
... microbiologyId 1..1 string microbiology_id
... visitId 1..1 string visit_id
... donorId 0..1 string donor_id
... ebvDna 0..1 boolean ebv_dna
... ebvDnaCopies 0..1 decimal ebv_dna_copies
... ebvIgmAntiEa 0..1 boolean ebv_igm_anti_ea
... ebvIgmAntiVca 0..1 boolean ebv_igm_anti_vca
... ebvIggAntiVca 0..1 boolean ebv_igg_anti_vca
... ebvIggEbna 0..1 boolean ebv_igg_ebna
... cmvDna 0..1 boolean cmv_dna
... cmvDnaCopies 0..1 decimal cmv_dna_copies
... cmvIgm 0..1 boolean cmv_igm
... cmvIgg 0..1 boolean cmv_igg
... parvovirusB19Dna 0..1 boolean parvovirus_b19_dna
... parvovirusB19DnaCopies 0..1 decimal parvovirus_b19_dna_copies
... parvovirusB19Igg 0..1 boolean parvovirus_b19_igg
... parvovirusB19Igm 0..1 boolean parvovirus_b19_igm
... hsvIgg 0..1 boolean hsv_igg
... hsvIgm 0..1 boolean hsv_igm
... adenovirusIgg 0..1 boolean adenovirus_igg
... adenovirusIgm 0..1 boolean adenovirus_igm
... bloodAdenovirusDna 0..1 boolean blood_adenovirus_dna
... bloodAdenovirusDnaCopies 0..1 decimal blood_adenovirus_dna_copies
... vzvIgg 0..1 boolean vzv_igg
... vzvIgm 0..1 boolean vzv_igm
... bloodBkvDna 0..1 boolean blood_bkv_dna
... bloodBkvDnaCopies 0..1 decimal blood_bkv_dna_copies
... urineBkvDna 0..1 boolean urine_bkv_dna
... bkvDnaKidneyBiopsy 0..1 boolean bkv_dna_kidney_biopsy
... bkvFishKidneyBiopsy 0..1 boolean bkv_fish_kidney_biopsy
... bloodColture 0..1 boolean blood_colture
... urineColture 0..1 boolean urine_colture
... otherPositivity 0..1 string other_positivity
... ebvHepatitisLiver 0..1 boolean ebv_hepatitis_liver
... evidenceBkvan 0..1 code evidence_bkvan

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. pc-microbiology-lm 0..* Base Microbiology logical model
... microbiologyId 1..1 string microbiology_id
... visitId 1..1 string visit_id
... donorId 0..1 string donor_id
... ebvDna 0..1 boolean ebv_dna
... ebvDnaCopies 0..1 decimal ebv_dna_copies
... ebvIgmAntiEa 0..1 boolean ebv_igm_anti_ea
... ebvIgmAntiVca 0..1 boolean ebv_igm_anti_vca
... ebvIggAntiVca 0..1 boolean ebv_igg_anti_vca
... ebvIggEbna 0..1 boolean ebv_igg_ebna
... cmvDna 0..1 boolean cmv_dna
... cmvDnaCopies 0..1 decimal cmv_dna_copies
... cmvIgm 0..1 boolean cmv_igm
... cmvIgg 0..1 boolean cmv_igg
... parvovirusB19Dna 0..1 boolean parvovirus_b19_dna
... parvovirusB19DnaCopies 0..1 decimal parvovirus_b19_dna_copies
... parvovirusB19Igg 0..1 boolean parvovirus_b19_igg
... parvovirusB19Igm 0..1 boolean parvovirus_b19_igm
... hsvIgg 0..1 boolean hsv_igg
... hsvIgm 0..1 boolean hsv_igm
... adenovirusIgg 0..1 boolean adenovirus_igg
... adenovirusIgm 0..1 boolean adenovirus_igm
... bloodAdenovirusDna 0..1 boolean blood_adenovirus_dna
... bloodAdenovirusDnaCopies 0..1 decimal blood_adenovirus_dna_copies
... vzvIgg 0..1 boolean vzv_igg
... vzvIgm 0..1 boolean vzv_igm
... bloodBkvDna 0..1 boolean blood_bkv_dna
... bloodBkvDnaCopies 0..1 decimal blood_bkv_dna_copies
... urineBkvDna 0..1 boolean urine_bkv_dna
... bkvDnaKidneyBiopsy 0..1 boolean bkv_dna_kidney_biopsy
... bkvFishKidneyBiopsy 0..1 boolean bkv_fish_kidney_biopsy
... bloodColture 0..1 boolean blood_colture
... urineColture 0..1 boolean urine_colture
... otherPositivity 0..1 string other_positivity
... ebvHepatitisLiver 0..1 boolean ebv_hepatitis_liver
... evidenceBkvan 0..1 code evidence_bkvan

doco Documentation for this format

This structure is derived from Base

Summary

Mandatory: 0 element(2 nested mandatory elements)

Key Elements View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. pc-microbiology-lm 0..* Base Microbiology logical model
... microbiologyId 1..1 string microbiology_id
... visitId 1..1 string visit_id
... donorId 0..1 string donor_id
... ebvDna 0..1 boolean ebv_dna
... ebvDnaCopies 0..1 decimal ebv_dna_copies
... ebvIgmAntiEa 0..1 boolean ebv_igm_anti_ea
... ebvIgmAntiVca 0..1 boolean ebv_igm_anti_vca
... ebvIggAntiVca 0..1 boolean ebv_igg_anti_vca
... ebvIggEbna 0..1 boolean ebv_igg_ebna
... cmvDna 0..1 boolean cmv_dna
... cmvDnaCopies 0..1 decimal cmv_dna_copies
... cmvIgm 0..1 boolean cmv_igm
... cmvIgg 0..1 boolean cmv_igg
... parvovirusB19Dna 0..1 boolean parvovirus_b19_dna
... parvovirusB19DnaCopies 0..1 decimal parvovirus_b19_dna_copies
... parvovirusB19Igg 0..1 boolean parvovirus_b19_igg
... parvovirusB19Igm 0..1 boolean parvovirus_b19_igm
... hsvIgg 0..1 boolean hsv_igg
... hsvIgm 0..1 boolean hsv_igm
... adenovirusIgg 0..1 boolean adenovirus_igg
... adenovirusIgm 0..1 boolean adenovirus_igm
... bloodAdenovirusDna 0..1 boolean blood_adenovirus_dna
... bloodAdenovirusDnaCopies 0..1 decimal blood_adenovirus_dna_copies
... vzvIgg 0..1 boolean vzv_igg
... vzvIgm 0..1 boolean vzv_igm
... bloodBkvDna 0..1 boolean blood_bkv_dna
... bloodBkvDnaCopies 0..1 decimal blood_bkv_dna_copies
... urineBkvDna 0..1 boolean urine_bkv_dna
... bkvDnaKidneyBiopsy 0..1 boolean bkv_dna_kidney_biopsy
... bkvFishKidneyBiopsy 0..1 boolean bkv_fish_kidney_biopsy
... bloodColture 0..1 boolean blood_colture
... urineColture 0..1 boolean urine_colture
... otherPositivity 0..1 string other_positivity
... ebvHepatitisLiver 0..1 boolean ebv_hepatitis_liver
... evidenceBkvan 0..1 code evidence_bkvan

doco Documentation for this format

Differential View

This structure is derived from Base

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. pc-microbiology-lm 0..* Base Microbiology logical model
... microbiologyId 1..1 string microbiology_id
... visitId 1..1 string visit_id
... donorId 0..1 string donor_id
... ebvDna 0..1 boolean ebv_dna
... ebvDnaCopies 0..1 decimal ebv_dna_copies
... ebvIgmAntiEa 0..1 boolean ebv_igm_anti_ea
... ebvIgmAntiVca 0..1 boolean ebv_igm_anti_vca
... ebvIggAntiVca 0..1 boolean ebv_igg_anti_vca
... ebvIggEbna 0..1 boolean ebv_igg_ebna
... cmvDna 0..1 boolean cmv_dna
... cmvDnaCopies 0..1 decimal cmv_dna_copies
... cmvIgm 0..1 boolean cmv_igm
... cmvIgg 0..1 boolean cmv_igg
... parvovirusB19Dna 0..1 boolean parvovirus_b19_dna
... parvovirusB19DnaCopies 0..1 decimal parvovirus_b19_dna_copies
... parvovirusB19Igg 0..1 boolean parvovirus_b19_igg
... parvovirusB19Igm 0..1 boolean parvovirus_b19_igm
... hsvIgg 0..1 boolean hsv_igg
... hsvIgm 0..1 boolean hsv_igm
... adenovirusIgg 0..1 boolean adenovirus_igg
... adenovirusIgm 0..1 boolean adenovirus_igm
... bloodAdenovirusDna 0..1 boolean blood_adenovirus_dna
... bloodAdenovirusDnaCopies 0..1 decimal blood_adenovirus_dna_copies
... vzvIgg 0..1 boolean vzv_igg
... vzvIgm 0..1 boolean vzv_igm
... bloodBkvDna 0..1 boolean blood_bkv_dna
... bloodBkvDnaCopies 0..1 decimal blood_bkv_dna_copies
... urineBkvDna 0..1 boolean urine_bkv_dna
... bkvDnaKidneyBiopsy 0..1 boolean bkv_dna_kidney_biopsy
... bkvFishKidneyBiopsy 0..1 boolean bkv_fish_kidney_biopsy
... bloodColture 0..1 boolean blood_colture
... urineColture 0..1 boolean urine_colture
... otherPositivity 0..1 string other_positivity
... ebvHepatitisLiver 0..1 boolean ebv_hepatitis_liver
... evidenceBkvan 0..1 code evidence_bkvan

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraints    Filter: Filtersdoco
.. pc-microbiology-lm 0..* Base Microbiology logical model
... microbiologyId 1..1 string microbiology_id
... visitId 1..1 string visit_id
... donorId 0..1 string donor_id
... ebvDna 0..1 boolean ebv_dna
... ebvDnaCopies 0..1 decimal ebv_dna_copies
... ebvIgmAntiEa 0..1 boolean ebv_igm_anti_ea
... ebvIgmAntiVca 0..1 boolean ebv_igm_anti_vca
... ebvIggAntiVca 0..1 boolean ebv_igg_anti_vca
... ebvIggEbna 0..1 boolean ebv_igg_ebna
... cmvDna 0..1 boolean cmv_dna
... cmvDnaCopies 0..1 decimal cmv_dna_copies
... cmvIgm 0..1 boolean cmv_igm
... cmvIgg 0..1 boolean cmv_igg
... parvovirusB19Dna 0..1 boolean parvovirus_b19_dna
... parvovirusB19DnaCopies 0..1 decimal parvovirus_b19_dna_copies
... parvovirusB19Igg 0..1 boolean parvovirus_b19_igg
... parvovirusB19Igm 0..1 boolean parvovirus_b19_igm
... hsvIgg 0..1 boolean hsv_igg
... hsvIgm 0..1 boolean hsv_igm
... adenovirusIgg 0..1 boolean adenovirus_igg
... adenovirusIgm 0..1 boolean adenovirus_igm
... bloodAdenovirusDna 0..1 boolean blood_adenovirus_dna
... bloodAdenovirusDnaCopies 0..1 decimal blood_adenovirus_dna_copies
... vzvIgg 0..1 boolean vzv_igg
... vzvIgm 0..1 boolean vzv_igm
... bloodBkvDna 0..1 boolean blood_bkv_dna
... bloodBkvDnaCopies 0..1 decimal blood_bkv_dna_copies
... urineBkvDna 0..1 boolean urine_bkv_dna
... bkvDnaKidneyBiopsy 0..1 boolean bkv_dna_kidney_biopsy
... bkvFishKidneyBiopsy 0..1 boolean bkv_fish_kidney_biopsy
... bloodColture 0..1 boolean blood_colture
... urineColture 0..1 boolean urine_colture
... otherPositivity 0..1 string other_positivity
... ebvHepatitisLiver 0..1 boolean ebv_hepatitis_liver
... evidenceBkvan 0..1 code evidence_bkvan

doco Documentation for this format

This structure is derived from Base

Summary

Mandatory: 0 element(2 nested mandatory elements)

 

Other representations of profile: CSV, Excel