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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

Logical Model: PcMicrobiology - Detailed Descriptions

Draft as of 2026-02-09

Definitions for the pc-microbiology-lm logical model.

Guidance on how to interpret the contents of this table can be foundhere

0. pc-microbiology-lm
Definition

Logical model representing the PROTECT-CHILD data model entity microbiology.

ShortMicrobiology logical model
Control0..*
Is Modifierfalse
Logical ModelInstances of this logical model are not marked to be the target of a Reference
2. pc-microbiology-lm.microbiologyId
Definition

Field microbiology_id from the PROTECT-CHILD data model.

ShortMicrobiology id
Control1..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
4. pc-microbiology-lm.patientId
Definition

Field patient_id from the PROTECT-CHILD data model. Foreign key to patient.

ShortPatient id
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
6. pc-microbiology-lm.donorId
Definition

Field donor_id from the PROTECT-CHILD data model. Foreign key to donor.

ShortDonor id
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
8. pc-microbiology-lm.ebvDna
Definition

Field ebv_dna from the PROTECT-CHILD data model.

ShortEbv dna
Control0..1
Typedecimal
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
10. pc-microbiology-lm.ebvIgmAntiEa
Definition

Field ebv_igm_anti_ea from the PROTECT-CHILD data model.

ShortEbv igm anti ea
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
12. pc-microbiology-lm.ebvIgmAntiVca
Definition

Field ebv_igm_anti_vca from the PROTECT-CHILD data model.

ShortEbv igm anti vca
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
14. pc-microbiology-lm.ebvIggAntiVca
Definition

Field ebv_igg_anti_vca from the PROTECT-CHILD data model.

ShortEbv igg anti vca
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
16. pc-microbiology-lm.ebvIggEbna
Definition

Field ebv_igg_ebna from the PROTECT-CHILD data model.

ShortEbv igg ebna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
18. pc-microbiology-lm.cmvDna
Definition

Field cmv_dna from the PROTECT-CHILD data model.

ShortCmv dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
20. pc-microbiology-lm.cmvIgm
Definition

Field cmv_igm from the PROTECT-CHILD data model.

ShortCmv igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
22. pc-microbiology-lm.cmvIgg
Definition

Field cmv_igg from the PROTECT-CHILD data model.

ShortCmv igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
24. pc-microbiology-lm.parvovirusB19Dna
Definition

Field parvovirus_b19_dna from the PROTECT-CHILD data model.

ShortParvovirus b19 dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
26. pc-microbiology-lm.parvovirusB19DnaIgg
Definition

Field parvovirus_b19_dna_igg from the PROTECT-CHILD data model.

ShortParvovirus b19 dna igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
28. pc-microbiology-lm.parvovirusB19DnaIgm
Definition

Field parvovirus_b19_dna_igm from the PROTECT-CHILD data model.

ShortParvovirus b19 dna igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
30. pc-microbiology-lm.hsvIgg
Definition

Field hsv_igg from the PROTECT-CHILD data model.

ShortHsv igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
32. pc-microbiology-lm.hsvIgm
Definition

Field hsv_igm from the PROTECT-CHILD data model.

ShortHsv igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
34. pc-microbiology-lm.adenovirusIgg
Definition

Field adenovirus_igg from the PROTECT-CHILD data model.

ShortAdenovirus igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
36. pc-microbiology-lm.adenovirusIgm
Definition

Field adenovirus_igm from the PROTECT-CHILD data model.

ShortAdenovirus igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
38. pc-microbiology-lm.vzvIgg
Definition

Field vzv_igg from the PROTECT-CHILD data model.

ShortVzv igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
40. pc-microbiology-lm.vzvIgm
Definition

Field vzv_igm from the PROTECT-CHILD data model.

ShortVzv igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
42. pc-microbiology-lm.bloodBkvDna
Definition

Field blood_bkv_dna from the PROTECT-CHILD data model.

ShortBlood bkv dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
44. pc-microbiology-lm.urineBkvDna
Definition

Field urine_bkv_dna from the PROTECT-CHILD data model.

ShortUrine bkv dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
46. pc-microbiology-lm.bkvDnaKidneyBiopsy
Definition

Field bkv_dna_kidney_biopsy from the PROTECT-CHILD data model.

ShortBkv dna kidney biopsy
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
48. pc-microbiology-lm.bkvFishKidneyBiopsy
Definition

Field bkv_fish_kidney_biopsy from the PROTECT-CHILD data model.

ShortBkv fish kidney biopsy
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be foundhere

0. pc-microbiology-lm
Definition

Logical model representing the PROTECT-CHILD data model entity microbiology.

ShortMicrobiology logical model
Logical ModelInstances of this logical model are not marked to be the target of a Reference
2. pc-microbiology-lm.microbiologyId
Definition

Field microbiology_id from the PROTECT-CHILD data model.

ShortMicrobiology id
Control1..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
4. pc-microbiology-lm.patientId
Definition

Field patient_id from the PROTECT-CHILD data model. Foreign key to patient.

ShortPatient id
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
6. pc-microbiology-lm.donorId
Definition

Field donor_id from the PROTECT-CHILD data model. Foreign key to donor.

ShortDonor id
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
8. pc-microbiology-lm.ebvDna
Definition

Field ebv_dna from the PROTECT-CHILD data model.

ShortEbv dna
Control0..1
Typedecimal
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
10. pc-microbiology-lm.ebvIgmAntiEa
Definition

Field ebv_igm_anti_ea from the PROTECT-CHILD data model.

ShortEbv igm anti ea
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
12. pc-microbiology-lm.ebvIgmAntiVca
Definition

Field ebv_igm_anti_vca from the PROTECT-CHILD data model.

ShortEbv igm anti vca
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
14. pc-microbiology-lm.ebvIggAntiVca
Definition

Field ebv_igg_anti_vca from the PROTECT-CHILD data model.

ShortEbv igg anti vca
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
16. pc-microbiology-lm.ebvIggEbna
Definition

Field ebv_igg_ebna from the PROTECT-CHILD data model.

ShortEbv igg ebna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
18. pc-microbiology-lm.cmvDna
Definition

Field cmv_dna from the PROTECT-CHILD data model.

ShortCmv dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
20. pc-microbiology-lm.cmvIgm
Definition

Field cmv_igm from the PROTECT-CHILD data model.

ShortCmv igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
22. pc-microbiology-lm.cmvIgg
Definition

Field cmv_igg from the PROTECT-CHILD data model.

ShortCmv igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
24. pc-microbiology-lm.parvovirusB19Dna
Definition

Field parvovirus_b19_dna from the PROTECT-CHILD data model.

ShortParvovirus b19 dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
26. pc-microbiology-lm.parvovirusB19DnaIgg
Definition

Field parvovirus_b19_dna_igg from the PROTECT-CHILD data model.

ShortParvovirus b19 dna igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
28. pc-microbiology-lm.parvovirusB19DnaIgm
Definition

Field parvovirus_b19_dna_igm from the PROTECT-CHILD data model.

ShortParvovirus b19 dna igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
30. pc-microbiology-lm.hsvIgg
Definition

Field hsv_igg from the PROTECT-CHILD data model.

ShortHsv igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
32. pc-microbiology-lm.hsvIgm
Definition

Field hsv_igm from the PROTECT-CHILD data model.

ShortHsv igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
34. pc-microbiology-lm.adenovirusIgg
Definition

Field adenovirus_igg from the PROTECT-CHILD data model.

ShortAdenovirus igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
36. pc-microbiology-lm.adenovirusIgm
Definition

Field adenovirus_igm from the PROTECT-CHILD data model.

ShortAdenovirus igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
38. pc-microbiology-lm.vzvIgg
Definition

Field vzv_igg from the PROTECT-CHILD data model.

ShortVzv igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
40. pc-microbiology-lm.vzvIgm
Definition

Field vzv_igm from the PROTECT-CHILD data model.

ShortVzv igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
42. pc-microbiology-lm.bloodBkvDna
Definition

Field blood_bkv_dna from the PROTECT-CHILD data model.

ShortBlood bkv dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
44. pc-microbiology-lm.urineBkvDna
Definition

Field urine_bkv_dna from the PROTECT-CHILD data model.

ShortUrine bkv dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
46. pc-microbiology-lm.bkvDnaKidneyBiopsy
Definition

Field bkv_dna_kidney_biopsy from the PROTECT-CHILD data model.

ShortBkv dna kidney biopsy
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
48. pc-microbiology-lm.bkvFishKidneyBiopsy
Definition

Field bkv_fish_kidney_biopsy from the PROTECT-CHILD data model.

ShortBkv fish kidney biopsy
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be foundhere

0. pc-microbiology-lm
Definition

Logical model representing the PROTECT-CHILD data model entity microbiology.

ShortMicrobiology logical model
Control0..*
Is Modifierfalse
Logical ModelInstances of this logical model are not marked to be the target of a Reference
2. pc-microbiology-lm.microbiologyId
Definition

Field microbiology_id from the PROTECT-CHILD data model.

ShortMicrobiology id
Control1..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
4. pc-microbiology-lm.patientId
Definition

Field patient_id from the PROTECT-CHILD data model. Foreign key to patient.

ShortPatient id
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
6. pc-microbiology-lm.donorId
Definition

Field donor_id from the PROTECT-CHILD data model. Foreign key to donor.

ShortDonor id
Control0..1
Typestring
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
8. pc-microbiology-lm.ebvDna
Definition

Field ebv_dna from the PROTECT-CHILD data model.

ShortEbv dna
Control0..1
Typedecimal
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
10. pc-microbiology-lm.ebvIgmAntiEa
Definition

Field ebv_igm_anti_ea from the PROTECT-CHILD data model.

ShortEbv igm anti ea
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
12. pc-microbiology-lm.ebvIgmAntiVca
Definition

Field ebv_igm_anti_vca from the PROTECT-CHILD data model.

ShortEbv igm anti vca
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
14. pc-microbiology-lm.ebvIggAntiVca
Definition

Field ebv_igg_anti_vca from the PROTECT-CHILD data model.

ShortEbv igg anti vca
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
16. pc-microbiology-lm.ebvIggEbna
Definition

Field ebv_igg_ebna from the PROTECT-CHILD data model.

ShortEbv igg ebna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
18. pc-microbiology-lm.cmvDna
Definition

Field cmv_dna from the PROTECT-CHILD data model.

ShortCmv dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
20. pc-microbiology-lm.cmvIgm
Definition

Field cmv_igm from the PROTECT-CHILD data model.

ShortCmv igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
22. pc-microbiology-lm.cmvIgg
Definition

Field cmv_igg from the PROTECT-CHILD data model.

ShortCmv igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
24. pc-microbiology-lm.parvovirusB19Dna
Definition

Field parvovirus_b19_dna from the PROTECT-CHILD data model.

ShortParvovirus b19 dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
26. pc-microbiology-lm.parvovirusB19DnaIgg
Definition

Field parvovirus_b19_dna_igg from the PROTECT-CHILD data model.

ShortParvovirus b19 dna igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
28. pc-microbiology-lm.parvovirusB19DnaIgm
Definition

Field parvovirus_b19_dna_igm from the PROTECT-CHILD data model.

ShortParvovirus b19 dna igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
30. pc-microbiology-lm.hsvIgg
Definition

Field hsv_igg from the PROTECT-CHILD data model.

ShortHsv igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
32. pc-microbiology-lm.hsvIgm
Definition

Field hsv_igm from the PROTECT-CHILD data model.

ShortHsv igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
34. pc-microbiology-lm.adenovirusIgg
Definition

Field adenovirus_igg from the PROTECT-CHILD data model.

ShortAdenovirus igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
36. pc-microbiology-lm.adenovirusIgm
Definition

Field adenovirus_igm from the PROTECT-CHILD data model.

ShortAdenovirus igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
38. pc-microbiology-lm.vzvIgg
Definition

Field vzv_igg from the PROTECT-CHILD data model.

ShortVzv igg
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
40. pc-microbiology-lm.vzvIgm
Definition

Field vzv_igm from the PROTECT-CHILD data model.

ShortVzv igm
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
42. pc-microbiology-lm.bloodBkvDna
Definition

Field blood_bkv_dna from the PROTECT-CHILD data model.

ShortBlood bkv dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
44. pc-microbiology-lm.urineBkvDna
Definition

Field urine_bkv_dna from the PROTECT-CHILD data model.

ShortUrine bkv dna
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
46. pc-microbiology-lm.bkvDnaKidneyBiopsy
Definition

Field bkv_dna_kidney_biopsy from the PROTECT-CHILD data model.

ShortBkv dna kidney biopsy
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension
48. pc-microbiology-lm.bkvFishKidneyBiopsy
Definition

Field bkv_fish_kidney_biopsy from the PROTECT-CHILD data model.

ShortBkv fish kidney biopsy
Control0..1
Typeboolean
Primitive ValueThis primitive element may be present, or absent, or replaced by an extension