| Quality Checks |
| Publisher Version: | IG Publisher Version: v1.6.11 |
| Publication Code: | phenomics-exchange . PackageId = hl7.fhir.uv.phenomics-exchange, Canonical = http://hl7.org/fhir/uv/phenomics-exchange |
| Realm Check for UV: | |
| Publication Request: | - Error fetching package-list from http://hl7.org/fhir/uv/phenomics-exchange: Not Found
- No publication request found
|
| Supressed Messages: | No Suppressed Issues
|
| Dependency Checks: | | Package | Version | FHIR | Canonical | Web Base | Comment |
|---|
  hl7.fhir.uv.phenomics-exchange | 0.1.0 | R4 | http://hl7.org/fhir/uv/phenomics-exchange | | |
 hl7.terminology.r4 | 5.5.0 M | R4 | http://terminology.hl7.org | http://terminology.hl7.org/5.5.0 | |
| hl7.fhir.uv.genomics-reporting | 2.0.0 M | R4 | http://hl7.org/fhir/uv/genomics-reporting | http://hl7.org/fhir/uv/genomics-reporting/STU2 | |
 hl7.fhir.uv.extensions | 5.1.0-cibuild V | R5 | http://hl7.org/fhir/extensions | https://build.fhir.org/ig/HL7/fhir-extensions/ | FHIR Version Mismatch |
 hl7.terminology.r5 | 5.5.0 M | R5 | http://terminology.hl7.org | http://terminology.hl7.org/5.5.0 | FHIR Version Mismatch |
Templates: hl7.fhir.template#current -> hl7.base.template#current -> fhir.base.template#current. Tools: 0.1.0 |
| Dependent IGs: | no references |
| Global Profiles: | (none declared) |
| Terminology Server(s): | http://tx.fhir.org/r4 (details) |
| HTA Analysis: | All OK |
| R5 Dependencies: | (none) |
| Draft Dependencies: |
-
hl7.fhir.r4.core#4.0.1: GuideParameterCode
(15 uses), Shareable CodeSystem
(5 uses), Specimen
(6 uses), CommonLanguages
(10 uses), SpecimenStatus
(1 uses), ServiceRequest
(5 uses), Practitioner
(20 uses), PractitionerRole
(20 uses), FHIRSpecimenCollectionMethod
(1 uses), SNOMEDCTBodyStructures
(5 uses), SpecimenProcessingProcedure
(1 uses), Substance
(2 uses), SpecimenContainerType
(1 uses), Condition
(7 uses), ConditionClinicalStatusCodes
(1 uses), ConditionVerificationStatus
(1 uses), ConditionCategoryCodes
(1 uses), Condition/DiagnosisSeverity
(1 uses), Condition/Problem/DiagnosisCodes
(1 uses), Group
(6 uses), Encounter
(7 uses), RelatedPerson
(17 uses), ConditionStage
(1 uses), ClinicalImpression
(1 uses), DiagnosticReport
(2 uses), ConditionStageType
(1 uses), ManifestationAndSymptomCodes
(1 uses), Organization
(19 uses), CarePlan
(4 uses), DeviceRequest
(3 uses), ImmunizationRecommendation
(4 uses), MedicationRequest
(7 uses), NutritionOrder
(4 uses), MedicationAdministration
(8 uses), MedicationDispense
(5 uses), MedicationStatement
(5 uses), Procedure
(6 uses), Immunization
(3 uses), ImagingStudy
(7 uses), ObservationCategoryCodes
(5 uses), LOINCCodes
(36 uses), Device
(18 uses), Location
(4 uses), CareTeam
(5 uses), ObservationMethods
(2 uses), DeviceMetric
(3 uses), ObservationReferenceRangeMeaningCodes
(3 uses), ObservationReferenceRangeAppliesToCodes
(3 uses), QuestionnaireResponse
(6 uses), MolecularSequence
(6 uses), DocumentReference
(5 uses), Media
(4 uses), Composition
(26 uses), CompositionStatus
(1 uses), FHIRDocumentTypeCodes
(1 uses), CompositionAttestationMode
(1 uses), DocumentRelationshipType
(1 uses), DocumentSectionCodes
(8 uses), ListMode
(8 uses), ListOrderCodes
(8 uses), ListEmptyReasons
(8 uses), Medication
(3 uses), MedicationAdministration Status Codes
(1 uses), SNOMEDCTReasonMedicationNotGivenCodes
(1 uses), MedicationAdministration Category Codes
(1 uses), SNOMEDCTMedicationCodes
(1 uses), EpisodeOfCare
(1 uses), MedicationAdministration Performer Function Codes
(1 uses), ReasonMedicationGivenCodes
(1 uses), SNOMEDCTAnatomicalStructureForAdministrationSiteCodes
(1 uses), SNOMEDCTRouteCodes
(1 uses), SNOMEDCTAdministrationMethodCodes
(1 uses), Provenance
(1 uses), DiagnosticReportStatus
(1 uses), DiagnosticServiceSectionCodes
(2 uses), LOINCDiagnosticReportCodes
(1 uses), SNOMEDCTClinicalFindings
(1 uses), Shareable ValueSet
(20 uses)
-
hl7.fhir.uv.tools#0.2.0: ResourceSortExt
(98 uses)
-
hl7.terminology.r5#5.5.0: ObservationCategoryCodes
(3 uses), MedicationRequestCategoryCodes
(1 uses)
|
| Modifier Extensions: | |
| Previous Version Comparison: | Unable to compare with previous version: Unable to find version history at http://hl7.org/fhir/uv/phenomics-exchange (Problem #1 with package-list.json at http://hl7.org/fhir/uv/phenomics-exchange: Not Found) |
| IPA Comparison: | n/a |
| IPS Comparison: | n/a |
| Summary: | errors = 18, warn = 139, info = 124, broken links = 0 |
| Path | Severity | Message |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[0].code (l26/c14) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[1].code (l42/c14) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[2].code (l58/c14) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[3].code (l74/c14) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[4].code (l90/c14) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[3].entry[0] (l83/c16) | error | Unable to find a match for profile DiagnosticReport/PhenopacketsGenomicInterpretationExample02 among choices: http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/phenopackets-genomic-interpretation |
| Bundle.entry[0].resource/*Composition/PhenopacketCompositionExample01*/.section[3].entry[0] (l83/c16) | Slicing Information | Details for DiagnosticReport/PhenopacketsGenomicInterpretationExample02 matching against profile http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/phenopackets-genomic-interpretation|0.1.0 Show Reasoning - Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.modifierExtension[0].value.ofType(CodeableConcept).coding[0]: A definition for CodeSystem 'http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus' could not be found, so the code cannot be validated
, - Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.modifierExtension[0].value.ofType(CodeableConcept): None of the codings provided are in the value set 'Interpretation Status Value Set' (http://hl7.org/fhir/uv/phenomics-exchange/ValueSet/interpretationStatus-vs|0.1.0), and a coding from this value set is required) (codes = http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus#0)
|
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/ (l236/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.code.coding[0].system (l248/c10) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.component[0].code.coding[0].system (l269/c14) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.component[0].value.ofType(CodeableConcept).coding[0].system (l278/c14) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.component[0].value.ofType(CodeableConcept) (l278/c14) | warning | Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/phenomics-exchange/ValueSet/HpoSeverity|0.1.0' because the code system http://human-phenotype-ontology.org was not found |
| Bundle.entry[3].resource/*Observation/CHF-with-severity*/.component[0].value.ofType(CodeableConcept) (l278/c14) | warning | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated; Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/phenomics-exchange/ValueSet/HpoSeverity|0.1.0' because the code system http://human-phenotype-ontology.org was not found |
| Bundle.entry[4].resource/*Observation/thrombocytopenia*/ (l293/c8) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Bundle.entry[4].resource/*Observation/thrombocytopenia*/ (l293/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[5].resource/*Condition/CHF-stageIII*/.code.coding[0].system (l352/c10) | information | A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[5].resource/*Condition/CHF-stageIII*/.stage[0].summary.coding[0] (l366/c14) | information | A definition for CodeSystem 'http://github.com/EBISPOT/efo' could not be found, so the code cannot be validated |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[0].value.ofType(CodeableConcept).coding[0].code (l401/c14) | warning | Unknown Code 'NCIT_C39853' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[1].value.ofType(CodeableConcept).coding[0].code (l413/c14) | warning | Unknown Code 'NCIT_C84509' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[2].value.ofType(CodeableConcept).coding[0].code (l425/c14) | warning | Unknown Code 'NCIT_C36136' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[3].value.ofType(CodeableConcept).coding[0].code (l437/c14) | warning | Unknown Code 'NCIT_C28054' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[4].value.ofType(CodeableConcept).coding[0].code (l449/c14) | warning | Unknown Code 'NCIT_C48699' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.extension[5].value.ofType(CodeableConcept).coding[0].system (l461/c14) | information | A definition for CodeSystem 'http://github.com/EBISPOT/efo' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.type.coding[0] (l484/c10) | information | A definition for CodeSystem 'http://github.com/EBISPOT/efo' could not be found, so the code cannot be validated |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.collection.bodySite.coding[0].system (l473/c12) | information | A definition for CodeSystem 'http://github.com/obophenotype/uberon' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[6].resource/*Specimen/bladderCarcinoma*/.processing[0].procedure.coding[0].code (l503/c14) | warning | Unknown Code 'NCIT_C5189' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.modifierExtension[0].value.ofType(CodeableConcept).coding[0] (l530/c14) | error | A definition for CodeSystem 'http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus' could not be found, so the code cannot be validated |
| Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.modifierExtension[0].value.ofType(CodeableConcept) (l530/c14) | warning | Unable to check whether the code is in the value set 'http://hl7.org/fhir/uv/phenomics-exchange/ValueSet/interpretationStatus-vs|0.1.0' because the code system http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus was not found |
| Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.modifierExtension[0].value.ofType(CodeableConcept) (l530/c14) | error | None of the codings provided are in the value set 'Interpretation Status Value Set' (http://hl7.org/fhir/uv/phenomics-exchange/ValueSet/interpretationStatus-vs|0.1.0), and a coding from this value set is required) (codes = http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus#0) |
| Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.code.coding[0].system (l582/c10) | information | A definition for CodeSystem 'http://loinc' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Bundle.entry[7].resource/*DiagnosticReport/PhenopacketsGenomicInterpretationExample02*/.code (l582/c10) | information | None of the codings provided are in the value set 'LOINC Diagnostic Report Codes' (http://hl7.org/fhir/ValueSet/report-codes|4.0.1), and a coding is recommended to come from this value set (codes = http://loinc#123) |
| Bundle.entry[8].resource/*Observation/PhenopacketsVariantExample01*/ (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Bundle.entry[8].resource/*Observation/PhenopacketsVariantExample01*/ (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[8].resource/*Observation/PhenopacketsVariantExample01*/ (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| Bundle (l1/c2) | information | Can't find 'Patient/phenopacketPatientExample01' in the bundle (Bundle.entry[7].resource.subject) |
| Bundle (l1/c2) | information | Can't find 'Specimen/phenopacketSpecimenExample01' in the bundle (Bundle.entry[7].resource.specimen[0]) |
| Bundle.entry[3].resource (l236/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[4].resource (l293/c8) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Bundle.entry[4].resource (l293/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[8].resource (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Bundle.entry[8].resource (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Bundle.entry[8].resource (l595/c8) | warning | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| Path | Severity | Message |
| Observation.code.coding[0].system (l5/c4) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[0].code.coding[0].system (l18/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[0].value.ofType(CodeableConcept).coding[0].system (l27/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[1].code.coding[0].system (l38/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[1].value.ofType(CodeableConcept).coding[0].system (l47/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[2].code.coding[0].system (l58/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[2].value.ofType(CodeableConcept).coding[0].system (l67/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[3].code.coding[0].system (l78/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[3].value.ofType(CodeableConcept).coding[0].system (l87/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[4].code.coding[0].system (l98/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[4].value.ofType(CodeableConcept).coding[0].system (l107/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[5].code.coding[0].system (l118/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[5].value.ofType(CodeableConcept).coding[0].system (l127/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[6].code.coding[0].system (l138/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[6].value.ofType(Quantity) (l147/c8) | information | A definition for CodeSystem 'http://some/unit/system' could not be found, so the code cannot be validated |
| Observation.component[7].code.coding[0].system (l155/c8) | information | A definition for CodeSystem 'http://github.com/phenopackets/core-ig/CodeSystem/OTHER' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[7].value.ofType(CodeableConcept).coding[0] (l164/c8) | information | A definition for CodeSystem 'http://github.com/phenopackets/core-ig/CodeSystem/OTHER' could not be found, so the code cannot be validated |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| Path | Severity | Message |
| Observation.code.coding[0].system (l5/c4) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[0].code.coding[0].system (l18/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[0].value.ofType(CodeableConcept).coding[0].system (l27/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[1].code.coding[0].system (l38/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[1].value.ofType(CodeableConcept).coding[0].system (l47/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[2].code.coding[0].system (l58/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[2].value.ofType(CodeableConcept).coding[0].system (l67/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[3].code.coding[0].system (l78/c8) | information | A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[3].value.ofType(Quantity) (l87/c8) | information | A definition for CodeSystem 'http://some/unit/system' could not be found, so the code cannot be validated |
| Observation.component[4].code.coding[0].system (l95/c8) | information | A definition for CodeSystem 'http://github.com/phenopackets/core-ig/CodeSystem/OTHER' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Observation.component[4].value.ofType(CodeableConcept).coding[0] (l104/c8) | information | A definition for CodeSystem 'http://github.com/phenopackets/core-ig/CodeSystem/OTHER' could not be found, so the code cannot be validated |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have a subject |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have a performer |
| Observation (l1/c2) | warning | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| Path | Severity | Message |
| Specimen.extension[0].value.ofType(CodeableConcept).coding[0].code (l12/c8) | warning | Unknown Code 'NCIT_C39853' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.extension[1].value.ofType(CodeableConcept).coding[0].code (l24/c8) | warning | Unknown Code 'NCIT_C84509' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.extension[2].value.ofType(CodeableConcept).coding[0].code (l36/c8) | warning | Unknown Code 'NCIT_C36136' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.extension[3].value.ofType(CodeableConcept).coding[0].code (l48/c8) | warning | Unknown Code 'NCIT_C28054' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.extension[4].value.ofType(CodeableConcept).coding[0].code (l60/c8) | warning | Unknown Code 'NCIT_C48699' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Specimen.extension[5].value.ofType(CodeableConcept).coding[0].system (l72/c8) | information | A definition for CodeSystem 'http://github.com/EBISPOT/efo' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Specimen.type.coding[0] (l95/c4) | information | A definition for CodeSystem 'http://github.com/EBISPOT/efo' could not be found, so the code cannot be validated |
| Specimen.collection.bodySite.coding[0].system (l84/c6) | information | A definition for CodeSystem 'http://github.com/obophenotype/uberon' could not be found, so the code cannot be validated (from http://tx.fhir.org/r4) |
| Specimen.processing[0].procedure.coding[0].code (l114/c8) | warning | Unknown Code 'NCIT_C5189' in the system 'http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl' version '' - note that the code system is labeled as a fragment, so the code may be valid in some other fragment (from http://tx.fhir.org/r4) |
| Path | Severity | Message |
| StructureDefinition.snapshot.element[59].pattern.ofType(CodeableConcept) (l1/c195703) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[73].pattern.ofType(CodeableConcept) (l1/c215921) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[87].pattern.ofType(CodeableConcept) (l1/c236059) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[101].pattern.ofType(CodeableConcept) (l1/c256289) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[115].pattern.ofType(CodeableConcept) (l1/c276457) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[129].pattern.ofType(CodeableConcept) (l1/c296508) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.snapshot.element[143].pattern.ofType(CodeableConcept) (l1/c316654) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[6].pattern.ofType(CodeableConcept) (l1/c329228) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[10].pattern.ofType(CodeableConcept) (l1/c329904) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[14].pattern.ofType(CodeableConcept) (l1/c330555) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[18].pattern.ofType(CodeableConcept) (l1/c331343) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[22].pattern.ofType(CodeableConcept) (l1/c332009) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[26].pattern.ofType(CodeableConcept) (l1/c332662) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| StructureDefinition.differential.element[30].pattern.ofType(CodeableConcept) (l1/c333404) | information | Reference to draft CodeSystem http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/section-type|0.1.0 |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-CHF-with-severity.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-MVP-with-onset.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-PhenopacketsVariantExample01.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-Polydactyly-with-modifier.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-amyotrophy.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-arachnodactyly.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-globalDevelopmentalDelay.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-hp.0003557.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-hypotonia.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-karyotypic-sex-invalid-1.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-karyotypic-sex-valid-1.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-longPhiltrum.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-lowSetEars.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-lvdysfunction-excluded.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-microphthalmia.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-muscleWeakness.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-phenotypic-abnormality-invalid-1.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-phenotypic-abnormality-valid-1.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-reducedVisualAcuity.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-retinalDetachment.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-tga.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Observation-thrombocytopenia.json | Best Practice Recommendation: In general, all observations should have a performer |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Bundle-PhenopacketsBundleExample01.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-PhenopacketsVariantExample01.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-amyotrophy.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-arachnodactyly.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-globalDevelopmentalDelay.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-hp.0003557.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-hypotonia.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-karyotypic-sex-invalid-1.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-karyotypic-sex-valid-1.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-longPhiltrum.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-lowSetEars.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-lvdysfunction-excluded.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-microphthalmia.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-muscleWeakness.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-phenotypic-abnormality-invalid-1.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-phenotypic-abnormality-valid-1.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-reducedVisualAcuity.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-retinalDetachment.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |
| fsh-generated/resources/Observation-tga.json | Best Practice Recommendation: In general, all observations should have an effective[x] () |