Phenomics Exchange for Research and Diagnostics
0.1.0 - ci-build International flag

Phenomics Exchange for Research and Diagnostics, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/phenomics-exchange-ig/ and changes regularly. See the Directory of published versions

Example Specimen: bladderCarcinoma

Generated Narrative: Specimen

ResourceSpecimen "bladderCarcinoma"

Profile: Biosample

Histological Diagnosis: Infiltrating Urothelial Carcinoma (NCI Thesaurus#NCIT_C39853)

Tumor Progression: Primary Malignant Neoplasm (NCI Thesaurus#NCIT_C84509)

Tumor Grade: Grade 2 Lesion (NCI Thesaurus#NCIT_C36136)

Pathological Tumor Stage: Stage II (NCI Thesaurus#NCIT_C28054)

Pathological TNM Finding: M0 Stage Finding (NCI Thesaurus#NCIT_C48699)

Material Sample: abnormal sample (efo#EFO_0009655)

identifier: arbitrary identifier

type: primary tumor sample (efo#EFO_0010942)

subject: Patient/example-patient " ANYPERSON"

Collections

-Collected[x]BodySite
*2021-01-20wall of urinary bladder (uberon#UBERON_0001256)

Processings

-Procedure
*Radical Cystoprostatectomy (NCI Thesaurus#NCIT_C5189)