Phenomics Exchange for Research and Diagnostics
0.1.0 - ci-build International flag

Phenomics Exchange for Research and Diagnostics, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/phenomics-exchange-ig/ and changes regularly. See the Directory of published versions

CodeSystem: HTS Format

Official URL: http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat Version: 0.1.0
Draft as of 2020-02-14 Computable Name: HtsFormat

Copyright/Legal: Global Alliance for Genomics and Health

An enumeration used to represent different high-throughput sequencing file formats.

This Code system is referenced in the content logical definition of the following value sets:

  • This CodeSystem is not used here; it may be used elsewhere (e.g. specifications and/or implementations that use this content)

This case-sensitive code system http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat defines the following codes:

CodeDisplay
UNKNOWN Unknown
SAM SAM
BAM BAM
CRAM CRAM
VCF VCF
BCF BCF
GVCF GVCF