HTA License Conformance Analysis for Phenomics Exchange for Research and Diagnostics

The content of this page is being developed with the HTA committee, and is subject to further change. Editors are welcome to use this page to pick up errors in their definitions, but should not regard the analysis as final.

http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl (NCI Thesaurus)

Uses7
Expected Copyright(copyright expectations unknown)
Approved:To be resolved

URL Name Copyright Notes
DiagnosticMarker Diagnostic Marker

Global Alliance for Genomics and Health
HistologicalDiagnosis HistologicalDiagnosis

Global Alliance for Genomics and Health
HistologicalDiagnosis HistologicalDiagnosis

Global Alliance for Genomics and Health
TumorGrade Tumor Grade

Global Alliance for Genomics and Health
TumorProgression Tumor Progression

Global Alliance for Genomics and Health
TumorStage Tumor Stage

Global Alliance for Genomics and Health
phenotypic-abnormality Phenotypic abnormality ValueSet

Global Alliance for Genomics and Health

http://human-phenotype-ontology.org (Human Phenotype Ontology)
Uses5
Expected Copyright(copyright expectations unknown)
Approved:To be resolved

URL Name Copyright Notes
HpoSeverity Hpo Severity Value Set

Global Alliance for Genomics and Health
Onset Onset ValueSet

This value set includes content from SNOMED CT, which is copyright © 2002+ International Health Terminology Standards Development Organisation (IHTSDO), and distributed by agreement between IHTSDO and HL7. Implementer use of SNOMED CT is not covered by this agreement
PhenotypicModifierValueSet Phenotypic modifier ValueSet

Global Alliance for Genomics and Health
PhenotypicModifierValueSet Phenotypic modifier ValueSet

Global Alliance for Genomics and Health
phenotypic-component Phenotypic component ValueSet

Global Alliance for Genomics and Health

http://snomed.info/sct (SNOMED CT (all versions))
Uses1
Expected Copyright

  • This value set includes content from SNOMED CT, which is copyright © 2002+ International Health Terminology Standards Development Organisation (IHTSDO), and distributed by agreement between IHTSDO and HL7. Implementer use of SNOMED CT is not covered by this agreement

  • The SNOMED International IPS Terminology is distributed by International Health Terminology Standards Development Organisation, trading as SNOMED International, and is subject the terms of the Creative Commons Attribution 4.0 International Public License. For more information, see SNOMED IPS Terminology

  • The HL7 International IPS implementation guides incorporate SNOMED CT®, used by permission of the International Health Terminology Standards Development Organisation, trading as SNOMED International. SNOMED CT was originally created by the College of American Pathologists. SNOMED CT is a registered trademark of the International Health Terminology Standards Development Organisation, all rights reserved. Implementers of SNOMED CT should review usage terms or directly contact SNOMED International: info@snomed.org

Approved:All OK

URL Name Copyright Notes
Onset Onset ValueSet ☑

http://purl.obolibrary.org/obo/ncbitaxon.owl
Uses1
Expected Copyright(copyright expectations unknown)
Approved:To be resolved

URL Name Copyright Notes
Taxonomy Taxonomy

Global Alliance for Genomics and Health

http://phenopacket-schema.readthedocs.io/en/v2/variant-interpretation.html#acmgpathogenicityclassification
Uses1
Expected Copyright(copyright expectations unknown)
Approved:To be resolved

URL Name Copyright Notes
acmgPathogenicityClassification-vs ACMG Pathogenicity Classification Value Set

This value set includes content from Phenopackets, which is copyright © 2016+ Global Alliance for Genomics and Health (GA4GH)

http://www.ebi.ac.uk/ols/ontologies/geno
Uses1
Expected Copyright(copyright expectations unknown)
Approved:To be resolved

URL Name Copyright Notes
geno-ontology-allelic-state-vs GENO Ontology Allelic State Value Set

Global Alliance for Genomics and Health

http://phenopacket-schema.readthedocs.io/en/v2/genomic-interpretation.html#interpretationstatus
Uses1
Expected Copyright(copyright expectations unknown)
Approved:To be resolved

URL Name Copyright Notes
interpretationStatus-vs Interpretation Status Value Set

This value set includes content from Phenopackets, which is copyright © 2016+ Global Alliance for Genomics and Health (GA4GH)

http://phenopacket-schema.readthedocs.io/en/v2/variant.html#rstmoleculecontext
Uses1
Expected Copyright(copyright expectations unknown)
Approved:To be resolved

URL Name Copyright Notes
moleculeContext-vs Molecule Context Value Set

This value set includes content from Phenopackets, which is copyright © 2016+ Global Alliance for Genomics and Health (GA4GH)

http://loinc.org (Logical Observation Identifiers, Names and Codes (LOINC))
Uses1
Expected Copyright

This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc

Approved:All OK

URL Name Copyright Notes
phenotypicFeatureVS Observation Codes for status of a PhenotypicFeature ☑

http://www.sequenceontology.org/
Uses1
Expected Copyright(copyright expectations unknown)
Approved:To be resolved

URL Name Copyright Notes
sequence-ontology-structural-variant-vs Sequence Ontology Structural Variant Value Set

Global Alliance for Genomics and Health

http://phenopacket-schema.readthedocs.io/en/v2/variant-interpretation.html#therapeuticactionability
Uses1
Expected Copyright(copyright expectations unknown)
Approved:To be resolved

URL Name Copyright Notes
therapeuticActionability-vs Therapeutic Actionability Value Set

This value set includes content from Phenopackets, which is copyright © 2016+ Global Alliance for Genomics and Health (GA4GH)