Phenomics Exchange for Research and Diagnostics
0.1.0 - ci-build International flag

Phenomics Exchange for Research and Diagnostics, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/phenomics-exchange-ig/ and changes regularly. See the Directory of published versions

Extension: Phred Quality Score

Official URL: http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/phred-quality-score Version: 0.1.0
Draft as of 2024-06-18 Computable Name: PhredQualityScore

Copyright/Legal: Global Alliance for Genomics and Health

Used to include Phred-scaled quality score for the assertion made in ALT.

Context of Use

This extension may be used on the following element(s):

  • Element ID Element

Usage info

Usage:

  • This Extension is not used by any profiles in this Implementation Guide

Formal Views of Extension Content

Description of Profiles, Differentials, Snapshots, and how the XML and JSON presentations work.

This structure is derived from Extension

Summary

Simple Extension of type Quantity: Used to include Phred-scaled quality score for the assertion made in ALT.

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraintsdoco
.. Extension 0..* Extension Phred Quality Score
... extension 0..0
... url 1..1 uri "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/phred-quality-score"
... value[x] 0..1 Quantity Value of extension

doco Documentation for this format
NameFlagsCard.TypeDescription & Constraintsdoco
.. Extension 0..* Extension Phred Quality Score
... id 0..1 string Unique id for inter-element referencing
... extension 0..0
... url 1..1 uri "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/phred-quality-score"

doco Documentation for this format

This structure is derived from Extension

Summary

Simple Extension of type Quantity: Used to include Phred-scaled quality score for the assertion made in ALT.

Differential View

This structure is derived from Extension

NameFlagsCard.TypeDescription & Constraintsdoco
.. Extension 0..* Extension Phred Quality Score
... extension 0..0
... url 1..1 uri "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/phred-quality-score"
... value[x] 0..1 Quantity Value of extension

doco Documentation for this format

Snapshot View

NameFlagsCard.TypeDescription & Constraintsdoco
.. Extension 0..* Extension Phred Quality Score
... id 0..1 string Unique id for inter-element referencing
... extension 0..0
... url 1..1 uri "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/phred-quality-score"

doco Documentation for this format

 

Other representations of profile: CSV, Excel, Schematron

Constraints

IdGradePath(s)DetailsRequirements
ele-1error**ALL** elementsAll FHIR elements must have a @value or children
: hasValue() or (children().count() > id.count())
ext-1error**ALL** extensionsMust have either extensions or value[x], not both
: extension.exists() != value.exists()