Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: tumorSpecimen - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Specimen/tumorSpecimen> a fhir:Specimen ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "tumorSpecimen"] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "generated" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Specimen tumorSpecimen</b></p><a name=\"tumorSpecimen\"> </a><a name=\"hctumorSpecimen\"> </a><p><b>identifier</b>: <code>http://example.org/identifiers/specimens</code>/222333</p><p><b>status</b>: Available</p><p><b>type</b>: <span title=\"Codes:{http://snomed.info/sct 122610009}\">Specimen from lung obtained by biopsy (specimen)</span></p><p><b>subject</b>: <a href=\"Patient-somaticPatient.html\">Hamsburg, Substance Jr</a></p><p><b>receivedTime</b>: 2023-01-23 01:01:01+0000</p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collected[x]</b></td><td><b>Method</b></td><td><b>BodySite</b></td></tr><tr><td style=\"display: none\">*</td><td>2023-01-01 01:01:00+0000</td><td><span title=\"Codes:{http://snomed.info/sct 129314006}\">Biopsy - action</span></td><td><span title=\"Codes:{http://snomed.info/sct 3341006}\">Right lung structure (body structure)</span></td></tr></table><p><b>note</b>: </p><blockquote><div><p>Tumor: 20%</p>\n</div></blockquote></div>"
  ] ;
  fhir:Specimen.identifier [
     fhir:index 0 ;
     fhir:Identifier.system [ fhir:value "http://example.org/identifiers/specimens" ] ;
     fhir:Identifier.value [ fhir:value "222333" ]
  ] ;
  fhir:Specimen.status [ fhir:value "available"] ;
  fhir:Specimen.type [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       a sct:122610009 ;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
       fhir:Coding.code [ fhir:value "122610009" ] ;
       fhir:Coding.display [ fhir:value "Specimen from lung obtained by biopsy (specimen)" ]
     ]
  ] ;
  fhir:Specimen.subject [
     fhir:link <http://hl7.org/fhir/Patient/somaticPatient> ;
     fhir:Reference.reference [ fhir:value "Patient/somaticPatient" ] ;
     fhir:Reference.display [ fhir:value "Hamsburg, Substance Jr" ]
  ] ;
  fhir:Specimen.receivedTime [ fhir:value "2023-01-23T01:01:01Z"^^xsd:dateTime] ;
  fhir:Specimen.collection [
     fhir:Specimen.collection.collectedDateTime [ fhir:value "2023-01-01T01:01:00Z"^^xsd:dateTime ] ;
     fhir:Specimen.collection.method [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         a sct:129314006 ;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
         fhir:Coding.code [ fhir:value "129314006" ] ;
         fhir:Coding.display [ fhir:value "Biopsy - action" ]
       ]
     ] ;
     fhir:Specimen.collection.bodySite [
       fhir:CodeableConcept.coding [
         fhir:index 0 ;
         a sct:3341006 ;
         fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
         fhir:Coding.code [ fhir:value "3341006" ] ;
         fhir:Coding.display [ fhir:value "Right lung structure (body structure)" ]
       ]
     ]
  ] ;
  fhir:Specimen.note [
     fhir:index 0 ;
     fhir:Annotation.text [ fhir:value "Tumor: 20%" ]
  ] .

<http://hl7.org/fhir/Patient/somaticPatient> a fhir:Patient .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Specimen/tumorSpecimen.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/Specimen/tumorSpecimen.ttl> .