Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: tumorSpecimen - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Specimen ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "tumorSpecimen"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Specimen tumorSpecimen</b></p><a name=\"tumorSpecimen\"> </a><a name=\"hctumorSpecimen\"> </a><a name=\"tumorSpecimen-en-US\"> </a><p><b>identifier</b>: <code>http://www.somesystemabc.net/identifiers/specimens</code>/222333</p><p><b>status</b>: Available</p><p><b>type</b>: <span title=\"Codes:{http://snomed.info/sct 122610009}\">Specimen from lung obtained by biopsy (specimen)</span></p><p><b>subject</b>: <a href=\"Patient-somaticPatient.html\">Hamsburg, Substance Jr</a></p><p><b>receivedTime</b>: 2023-01-23 01:01:01+0000</p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collected[x]</b></td><td><b>Method</b></td><td><b>BodySite</b></td></tr><tr><td style=\"display: none\">*</td><td>2023-01-01 01:01:00+0000</td><td><span title=\"Codes:{http://snomed.info/sct 129314006}\">Biopsy - action</span></td><td><span title=\"Codes:{http://snomed.info/sct 3341006}\">Right lung structure (body structure)</span></td></tr></table><p><b>note</b>: Tumor: 20%</p></div>"
  ] ; # 
  fhir:identifier ( [
fhir:system [ fhir:v "http://www.somesystemabc.net/identifiers/specimens"^^xsd:anyURI ] ;
fhir:value [ fhir:v "222333" ]
  ] ) ; # 
  fhir:status [ fhir:v "available"] ; # 
  fhir:type [
    ( fhir:coding [
a sct:122610009 ;
fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
fhir:code [ fhir:v "122610009" ] ;
fhir:display [ fhir:v "Specimen from lung obtained by biopsy (specimen)" ]     ] )
  ] ; # 
  fhir:subject [
fhir:reference [ fhir:v "Patient/somaticPatient" ] ;
fhir:display [ fhir:v "Hamsburg, Substance Jr" ]
  ] ; # 
  fhir:receivedTime [ fhir:v "2023-01-23T01:01:01Z"^^xsd:dateTime] ; # 
  fhir:collection [
fhir:collected [ fhir:v "2023-01-01T01:01:00Z"^^xsd:dateTime ] ;
fhir:method [
      ( fhir:coding [
a sct:129314006 ;
fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
fhir:code [ fhir:v "129314006" ] ;
fhir:display [ fhir:v "Biopsy - action" ]       ] )     ] ;
fhir:bodySite [
      ( fhir:coding [
a sct:3341006 ;
fhir:system [ fhir:v "http://snomed.info/sct"^^xsd:anyURI ] ;
fhir:code [ fhir:v "3341006" ] ;
fhir:display [ fhir:v "Right lung structure (body structure)" ]       ] )     ]
  ] ; # 
  fhir:note ( [
fhir:text [ fhir:v "Tumor: 20%" ]
  ] ) . #