Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: tumorSpecimen - JSON Representation

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{
  "resourceType" : "Specimen",
  "id" : "tumorSpecimen",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Specimen tumorSpecimen</b></p><a name=\"tumorSpecimen\"> </a><a name=\"hctumorSpecimen\"> </a><a name=\"hctumorSpecimen-en-US\"> </a><p><b>identifier</b>: <code>http://www.somesystemabc.net/identifiers/specimens</code>/222333</p><p><b>status</b>: Available</p><p><b>type</b>: <span title=\"Codes:{http://snomed.info/sct 122610009}\">Specimen from lung obtained by biopsy (specimen)</span></p><p><b>subject</b>: <a href=\"Patient-somaticPatient.html\">Hamsburg, Substance Jr</a></p><p><b>receivedTime</b>: 2023-01-23 01:01:01+0000</p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collected[x]</b></td><td><b>Method</b></td><td><b>BodySite</b></td></tr><tr><td style=\"display: none\">*</td><td>2023-01-01 01:01:00+0000</td><td><span title=\"Codes:{http://snomed.info/sct 129314006}\">Biopsy - action</span></td><td><span title=\"Codes:{http://snomed.info/sct 3341006}\">Right lung structure (body structure)</span></td></tr></table><p><b>note</b>: Tumor: 20%</p></div>"
  },
  "identifier" : [
    {
      "system" : "http://www.somesystemabc.net/identifiers/specimens",
      "value" : "222333"
    }
  ],
  "status" : "available",
  "type" : {
    "coding" : [
      {
        "system" : "http://snomed.info/sct",
        "code" : "122610009",
        "display" : "Specimen from lung obtained by biopsy (specimen)"
      }
    ]
  },
  "subject" : {
    🔗 "reference" : "Patient/somaticPatient",
    "display" : "Hamsburg, Substance Jr"
  },
  "receivedTime" : "2023-01-23T01:01:01Z",
  "collection" : {
    "collectedDateTime" : "2023-01-01T01:01:00Z",
    "method" : {
      "coding" : [
        {
          "system" : "http://snomed.info/sct",
          "code" : "129314006",
          "display" : "Biopsy - action"
        }
      ]
    },
    "bodySite" : {
      "coding" : [
        {
          "system" : "http://snomed.info/sct",
          "code" : "3341006",
          "display" : "Right lung structure (body structure)"
        }
      ]
    }
  },
  "note" : [
    {
      "text" : "Tumor: 20%"
    }
  ]
}