Genomics Reporting Implementation Guide
3.0.0 - STU3 International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: lungMass - XML Representation

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<Procedure xmlns="http://hl7.org/fhir">
  <id value="lungMass"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study"/>
  </meta>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Procedure lungMass</b></p><a name="lungMass"> </a><a name="hclungMass"> </a><a name="lungMass-en-US"> </a><p><b>Genomic Study Analysis Extension</b>: <a href="Procedure-lungMass-analysis1.html">Procedure: extension = Sequence analysis of the entire coding region,Somatic,SNV,MNV,delins,GRCh38,-&gt;Specimen: identifier = http://www.somesystemabc.net/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,-&gt;John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing))),,,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.</a></p><p><b>Genomic Study Analysis Extension</b>: <a href="Procedure-lungMass-analysis2.html">Procedure: extension = Deletion/duplication analysis,Somatic,CNV,GRCh38,-&gt;Specimen: identifier = http://www.somesystemabc.net/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,-&gt;John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing))),,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.</a></p><p><b>basedOn</b>: <a href="ServiceRequest-genomicServiceRequest.html">ServiceRequest Molecular genetic test (procedure)</a></p><p><b>status</b>: Completed</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span></p><p><b>code</b>: <span title="Codes:">Solid tumor whole exome sequencing panel</span></p><p><b>subject</b>: <a href="Patient-genomicPatient.html">John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing)))</a></p><p><b>performed</b>: 2019-03-01</p><p><b>asserter</b>: <a href="Practitioner-practitioner02.html">Practitioner Jane Doel </a></p><p><b>reasonCode</b>: <span title="Codes:{http://snomed.info/sct 309529002}">Lung mass (finding)</span></p><p><b>note</b>: For technical reasons, PIK3CB was deemed uncallable.</p></div>
  </text>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext">
    <valueReference>🔗 
      <reference value="Procedure/lungMass-analysis1"/>
    </valueReference>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext">
    <valueReference>🔗 
      <reference value="Procedure/lungMass-analysis2"/>
    </valueReference>
  </extension>
  <basedOn>🔗 
    <reference value="ServiceRequest/genomicServiceRequest"/>
  </basedOn>
  <status value="completed"/>
  <category>
    <coding>
      <system
              value="http://terminology.hl7.org/CodeSystem/observation-category"/>
      <code value="laboratory"/>
    </coding>
  </category>
  <code>
    <text value="Solid tumor whole exome sequencing panel"/>
  </code>
  <subject>🔗 
    <reference value="Patient/genomicPatient"/>
  </subject>
  <performedDateTime value="2019-03-01"/>
  <asserter>🔗 
    <reference value="Practitioner/practitioner02"/>
  </asserter>
  <reasonCode>
    <coding>
      <system value="http://snomed.info/sct"/>
      <code value="309529002"/>
      <display value="Lung mass (finding)"/>
    </coding>
  </reasonCode>
  <note>
    <text value="For technical reasons, PIK3CB was deemed uncallable."/>
  </note>
</Procedure>