Genomics Reporting Implementation Guide
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Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: lungMass - TTL Representation

Page standards status: Informative

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sct: <http://snomed.info/id/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Procedure/lungMass> a fhir:Procedure ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "lungMass"] ;
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study" ;
       fhir:index 0 ;
       fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study>
     ]
  ] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Procedure lungMass</b></p><a name=\"lungMass\"> </a><a name=\"hclungMass\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genomic-study.html\">Genomic Study</a></p></div><p><b>Genomic Study Analysis Extension</b>: <a href=\"Procedure-lungMass-analysis1.html\">Procedure: extension = Sequence analysis of the entire coding region,Somatic,SNV,MNV,delins,GRCh38,-&gt;Specimen: identifier = http://example.org/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,-&gt;John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing))),,,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.</a></p><p><b>Genomic Study Analysis Extension</b>: <a href=\"Procedure-lungMass-analysis2.html\">Procedure: extension = Deletion/duplication analysis,Somatic,CNV,GRCh38,-&gt;Specimen: identifier = http://example.org/identifiers/specimens#4; status = available; type = Specimen from lung obtained by biopsy (specimen); receivedTime = 2019-03-01 01:01:01+0000,-&gt;John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing))),,; instantiatesUri = https://pubmed.ncbi.nlm.nih.gov/33927380/; status = completed; category = Laboratory; performed[x] = 2019-03-01 01:01:10-0600; note = For technical reasons, PIK3CB was deemed uncallable using this method.</a></p><p><b>basedOn</b>: <a href=\"ServiceRequest-genomicServiceRequest.html\">ServiceRequest Molecular genetic test (procedure)</a></p><p><b>status</b>: Completed</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span></p><p><b>code</b>: <span title=\"Codes:\">Solid tumor whole exome sequencing panel</span></p><p><b>subject</b>: <a href=\"Patient-genomicPatient.html\">John Junior Doe (official) Unknown, DoB: 2001-01-01 ( Medical record number: 11117 (use: temp, period: 2021-01-01 --&gt; (ongoing)))</a></p><p><b>performed</b>: 2019-03-01</p><p><b>asserter</b>: <a href=\"Practitioner-practitioner02.html\">Practitioner Jane Doel </a></p><p><b>reasonCode</b>: <span title=\"Codes:{http://snomed.info/sct 309529002}\">Lung mass (finding)</span></p><p><b>note</b>: </p><blockquote><div><p>For technical reasons, PIK3CB was deemed uncallable.</p>\n</div></blockquote></div>"
  ] ;
  fhir:DomainResource.extension [
     fhir:index 0 ;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext" ] ;
     fhir:Extension.valueReference [
       fhir:link <http://hl7.org/fhir/Procedure/lungMass-analysis1> ;
       fhir:Reference.reference [ fhir:value "Procedure/lungMass-analysis1" ]
     ]
  ], [
     fhir:index 1 ;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext" ] ;
     fhir:Extension.valueReference [
       fhir:link <http://hl7.org/fhir/Procedure/lungMass-analysis2> ;
       fhir:Reference.reference [ fhir:value "Procedure/lungMass-analysis2" ]
     ]
  ] ;
  fhir:Procedure.basedOn [
     fhir:index 0 ;
     fhir:link <http://hl7.org/fhir/ServiceRequest/genomicServiceRequest> ;
     fhir:Reference.reference [ fhir:value "ServiceRequest/genomicServiceRequest" ]
  ] ;
  fhir:Procedure.status [ fhir:value "completed"] ;
  fhir:Procedure.category [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ] ;
       fhir:Coding.code [ fhir:value "laboratory" ]
     ]
  ] ;
  fhir:Procedure.code [
     fhir:CodeableConcept.text [ fhir:value "Solid tumor whole exome sequencing panel" ]
  ] ;
  fhir:Procedure.subject [
     fhir:link <http://hl7.org/fhir/Patient/genomicPatient> ;
     fhir:Reference.reference [ fhir:value "Patient/genomicPatient" ]
  ] ;
  fhir:Procedure.performedDateTime [ fhir:value "2019-03-01"^^xsd:date] ;
  fhir:Procedure.asserter [
     fhir:link <http://hl7.org/fhir/Practitioner/practitioner02> ;
     fhir:Reference.reference [ fhir:value "Practitioner/practitioner02" ]
  ] ;
  fhir:Procedure.reasonCode [
     fhir:index 0 ;
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       a sct:309529002 ;
       fhir:Coding.system [ fhir:value "http://snomed.info/sct" ] ;
       fhir:Coding.code [ fhir:value "309529002" ] ;
       fhir:Coding.display [ fhir:value "Lung mass (finding)" ]
     ]
  ] ;
  fhir:Procedure.note [
     fhir:index 0 ;
     fhir:Annotation.text [ fhir:value "For technical reasons, PIK3CB was deemed uncallable." ]
  ] .

<http://hl7.org/fhir/Procedure/lungMass-analysis1> a fhir:Procedure .

<http://hl7.org/fhir/Procedure/lungMass-analysis2> a fhir:Procedure .

<http://hl7.org/fhir/ServiceRequest/genomicServiceRequest> a fhir:ServiceRequest .

<http://hl7.org/fhir/Patient/genomicPatient> a fhir:Patient .

<http://hl7.org/fhir/Practitioner/practitioner02> a fhir:Practitioner .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Procedure/lungMass.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/Procedure/lungMass.ttl> .