Genomics Reporting Implementation Guide
3.0.0 - release
Genomics Reporting Implementation Guide
3.0.0 - release
Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
| Active as of 2024-11-19 |
<ValueSet xmlns="http://hl7.org/fhir">
<id value="molecular-biomarker-code-vs"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: ValueSet molecular-biomarker-code-vs</b></p><a name="molecular-biomarker-code-vs"> </a><a name="hcmolecular-biomarker-code-vs"> </a><a name="molecular-biomarker-code-vs-en-US"> </a><p>This value set includes codes based on the following rules:</p><ul><li>Include these codes as defined in <a href="http://loinc.org"><code>http://loinc.org</code></a><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href="https://loinc.org/85337-4/">85337-4</a></td><td>Estrogen receptor Ag Immune stain Ql (Breast cancer specimen)</td></tr><tr><td><a href="https://loinc.org/72382-5/">72382-5</a></td><td>HER2 IA Qn (Tiss)</td></tr><tr><td><a href="https://loinc.org/77637-7/">77637-7</a></td><td>HLA-A and B and C (class I) IgG panel IA [Identifier]</td></tr><tr><td><a href="https://loinc.org/40557-1/">40557-1</a></td><td>Progesterone receptor Ag Immune stain Ql (Tiss)</td></tr><tr><td><a href="https://loinc.org/85147-7/">85147-7</a></td><td>PD-L1 by clone 22C3 Immune stain Doc (Tiss)</td></tr><tr><td><a href="https://loinc.org/59025-7/">59025-7</a></td><td>Neutrophil Ab FC Qn (S)</td></tr><tr><td><a href="https://loinc.org/59003-4/">59003-4</a></td><td>Lactoferrin Ab IA Qn (S)</td></tr><tr><td><a href="https://loinc.org/10495-0/">10495-0</a></td><td>Insulin Ag Immune stain Ql (Tiss)</td></tr><tr><td><a href="https://loinc.org/16550-6/">16550-6</a></td><td>Carbohydrates Nom (U)</td></tr><tr><td><a href="https://loinc.org/2569-2/">2569-2</a></td><td>Lipids (S) [Mass/Vol]</td></tr><tr><td><a href="https://loinc.org/4551-8/">4551-8</a></td><td>Hemoglobin A2 (Bld) [Mass fraction]</td></tr><tr><td><a href="https://loinc.org/19195-7/">19195-7</a></td><td>Prostate specific Ag Qn</td></tr><tr><td><a href="https://loinc.org/64083-9/">64083-9</a></td><td>MGMT gene methylation score Molgen (Tiss) [Ratio]</td></tr><tr><td><a href="https://loinc.org/62862-8/">62862-8</a></td><td>Microsatellite instability Immune stain Ql (Tiss)</td></tr><tr><td><a href="https://loinc.org/81704-9/">81704-9</a></td><td>Microsatellite instability marker D17S250 Ql (Cancer specimen)</td></tr><tr><td><a href="https://loinc.org/94077-5/">94077-5</a></td><td>Tumor mutation burden Ql (Tumor) [Interp]</td></tr></table></li><li>Include these codes as defined in <a href="http://terminology.hl7.org/6.1.0/CodeSystem-v3-nciThesaurus.html"><code>http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl</code></a><table class="none"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C120465</td><td>Homologous Recombination Repair Deficiency</td></tr></table></li></ul></div>
</text>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
<valueCode value="cg"/>
</extension>
<url
value="http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-code-vs"/>
<version value="3.0.0"/>
<name value="MolecularBiomarkerCodeVS"/>
<title value="Molecular Biomarker Codes"/>
<status value="active"/>
<experimental value="false"/>
<date value="2024-11-19T22:01:39+00:00"/>
<publisher value="HL7 International / Clinical Genomics"/>
<contact>
<name value="HL7 International / Clinical Genomics"/>
<telecom>
<system value="url"/>
<value value="http://www.hl7.org/Special/committees/clingenomics"/>
</telecom>
<telecom>
<system value="email"/>
<value value="cg@lists.HL7.org"/>
</telecom>
</contact>
<description value="Value Set for terms that can be used as Biomarkers."/>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
<display value="World"/>
</coding>
</jurisdiction>
<copyright
value="This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc.
This value set includes content from SNOMED CT, which is copyright © 2002+ International Health Terminology Standards Development Organisation (IHTSDO), and distributed by agreement between IHTSDO and HL7. Implementer use of SNOMED CT is not covered by this agreement."/>
<compose>
<include>
<system value="http://loinc.org"/>
<concept>
<code value="85337-4"/>
<display
value="Estrogen receptor Ag Immune stain Ql (Breast cancer specimen)"/>
</concept>
<concept>
<code value="72382-5"/>
<display value="HER2 IA Qn (Tiss)"/>
</concept>
<concept>
<code value="77637-7"/>
<display
value="HLA-A and B and C (class I) IgG panel IA [Identifier]"/>
</concept>
<concept>
<code value="40557-1"/>
<display value="Progesterone receptor Ag Immune stain Ql (Tiss)"/>
</concept>
<concept>
<code value="85147-7"/>
<display value="PD-L1 by clone 22C3 Immune stain Doc (Tiss)"/>
</concept>
<concept>
<code value="59025-7"/>
<display value="Neutrophil Ab FC Qn (S)"/>
</concept>
<concept>
<code value="59003-4"/>
<display value="Lactoferrin Ab IA Qn (S)"/>
</concept>
<concept>
<code value="10495-0"/>
<display value="Insulin Ag Immune stain Ql (Tiss)"/>
</concept>
<concept>
<code value="16550-6"/>
<display value="Carbohydrates Nom (U)"/>
</concept>
<concept>
<code value="2569-2"/>
<display value="Lipids (S) [Mass/Vol]"/>
</concept>
<concept>
<code value="4551-8"/>
<display value="Hemoglobin A2 (Bld) [Mass fraction]"/>
</concept>
<concept>
<code value="19195-7"/>
<display value="Prostate specific Ag Qn"/>
</concept>
<concept>
<code value="64083-9"/>
<display value="MGMT gene methylation score Molgen (Tiss) [Ratio]"/>
</concept>
<concept>
<code value="62862-8"/>
<display value="Microsatellite instability Immune stain Ql (Tiss)"/>
</concept>
<concept>
<code value="81704-9"/>
<display
value="Microsatellite instability marker D17S250 Ql (Cancer specimen)"/>
</concept>
<concept>
<code value="94077-5"/>
<display value="Tumor mutation burden Ql (Tumor) [Interp]"/>
</concept>
</include>
<include>
<system value="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl"/>
<concept>
<code value="C120465"/>
<display value="Homologous Recombination Repair Deficiency"/>
</concept>
</include>
</compose>
</ValueSet>
IG © 2022+ HL7 International / Clinical Genomics. Package hl7.fhir.uv.genomics-reporting#3.0.0 based on FHIR 4.0.1. Generated 2024-11-19
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