Genomics Reporting Implementation Guide
3.0.0 - release
Genomics Reporting Implementation Guide
3.0.0 - release
Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
| Active as of 2024-11-19 |
{
"resourceType" : "ValueSet",
"id" : "molecular-biomarker-code-vs",
"text" : {
"status" : "generated",
"div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ValueSet molecular-biomarker-code-vs</b></p><a name=\"molecular-biomarker-code-vs\"> </a><a name=\"hcmolecular-biomarker-code-vs\"> </a><a name=\"molecular-biomarker-code-vs-en-US\"> </a><p>This value set includes codes based on the following rules:</p><ul><li>Include these codes as defined in <a href=\"http://loinc.org\"><code>http://loinc.org</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td><a href=\"https://loinc.org/85337-4/\">85337-4</a></td><td>Estrogen receptor Ag Immune stain Ql (Breast cancer specimen)</td></tr><tr><td><a href=\"https://loinc.org/72382-5/\">72382-5</a></td><td>HER2 IA Qn (Tiss)</td></tr><tr><td><a href=\"https://loinc.org/77637-7/\">77637-7</a></td><td>HLA-A and B and C (class I) IgG panel IA [Identifier]</td></tr><tr><td><a href=\"https://loinc.org/40557-1/\">40557-1</a></td><td>Progesterone receptor Ag Immune stain Ql (Tiss)</td></tr><tr><td><a href=\"https://loinc.org/85147-7/\">85147-7</a></td><td>PD-L1 by clone 22C3 Immune stain Doc (Tiss)</td></tr><tr><td><a href=\"https://loinc.org/59025-7/\">59025-7</a></td><td>Neutrophil Ab FC Qn (S)</td></tr><tr><td><a href=\"https://loinc.org/59003-4/\">59003-4</a></td><td>Lactoferrin Ab IA Qn (S)</td></tr><tr><td><a href=\"https://loinc.org/10495-0/\">10495-0</a></td><td>Insulin Ag Immune stain Ql (Tiss)</td></tr><tr><td><a href=\"https://loinc.org/16550-6/\">16550-6</a></td><td>Carbohydrates Nom (U)</td></tr><tr><td><a href=\"https://loinc.org/2569-2/\">2569-2</a></td><td>Lipids (S) [Mass/Vol]</td></tr><tr><td><a href=\"https://loinc.org/4551-8/\">4551-8</a></td><td>Hemoglobin A2 (Bld) [Mass fraction]</td></tr><tr><td><a href=\"https://loinc.org/19195-7/\">19195-7</a></td><td>Prostate specific Ag Qn</td></tr><tr><td><a href=\"https://loinc.org/64083-9/\">64083-9</a></td><td>MGMT gene methylation score Molgen (Tiss) [Ratio]</td></tr><tr><td><a href=\"https://loinc.org/62862-8/\">62862-8</a></td><td>Microsatellite instability Immune stain Ql (Tiss)</td></tr><tr><td><a href=\"https://loinc.org/81704-9/\">81704-9</a></td><td>Microsatellite instability marker D17S250 Ql (Cancer specimen)</td></tr><tr><td><a href=\"https://loinc.org/94077-5/\">94077-5</a></td><td>Tumor mutation burden Ql (Tumor) [Interp]</td></tr></table></li><li>Include these codes as defined in <a href=\"http://terminology.hl7.org/6.1.0/CodeSystem-v3-nciThesaurus.html\"><code>http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl</code></a><table class=\"none\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td>C120465</td><td>Homologous Recombination Repair Deficiency</td></tr></table></li></ul></div>"
},
"extension" : [
{
"url" : "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg",
"valueCode" : "cg"
}
],
"url" : "http://hl7.org/fhir/uv/genomics-reporting/ValueSet/molecular-biomarker-code-vs",
"version" : "3.0.0",
"name" : "MolecularBiomarkerCodeVS",
"title" : "Molecular Biomarker Codes",
"status" : "active",
"experimental" : false,
"date" : "2024-11-19T22:01:39+00:00",
"publisher" : "HL7 International / Clinical Genomics",
"contact" : [
{
"name" : "HL7 International / Clinical Genomics",
"telecom" : [
{
"system" : "url",
"value" : "http://www.hl7.org/Special/committees/clingenomics"
},
{
"system" : "email",
"value" : "cg@lists.HL7.org"
}
]
}
],
"description" : "Value Set for terms that can be used as Biomarkers.",
"jurisdiction" : [
{
"coding" : [
{
"system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
"code" : "001",
"display" : "World"
}
]
}
],
"copyright" : "This material contains content from LOINC (http://loinc.org). LOINC is copyright © 1995-2020, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee and is available at no cost under the license at http://loinc.org/license. LOINC® is a registered United States trademark of Regenstrief Institute, Inc.\nThis value set includes content from SNOMED CT, which is copyright © 2002+ International Health Terminology Standards Development Organisation (IHTSDO), and distributed by agreement between IHTSDO and HL7. Implementer use of SNOMED CT is not covered by this agreement.",
"compose" : {
"include" : [
{
"system" : "http://loinc.org",
"concept" : [
{
"code" : "85337-4",
"display" : "Estrogen receptor Ag Immune stain Ql (Breast cancer specimen)"
},
{
"code" : "72382-5",
"display" : "HER2 IA Qn (Tiss)"
},
{
"code" : "77637-7",
"display" : "HLA-A and B and C (class I) IgG panel IA [Identifier]"
},
{
"code" : "40557-1",
"display" : "Progesterone receptor Ag Immune stain Ql (Tiss)"
},
{
"code" : "85147-7",
"display" : "PD-L1 by clone 22C3 Immune stain Doc (Tiss)"
},
{
"code" : "59025-7",
"display" : "Neutrophil Ab FC Qn (S)"
},
{
"code" : "59003-4",
"display" : "Lactoferrin Ab IA Qn (S)"
},
{
"code" : "10495-0",
"display" : "Insulin Ag Immune stain Ql (Tiss)"
},
{
"code" : "16550-6",
"display" : "Carbohydrates Nom (U)"
},
{
"code" : "2569-2",
"display" : "Lipids (S) [Mass/Vol]"
},
{
"code" : "4551-8",
"display" : "Hemoglobin A2 (Bld) [Mass fraction]"
},
{
"code" : "19195-7",
"display" : "Prostate specific Ag Qn"
},
{
"code" : "64083-9",
"display" : "MGMT gene methylation score Molgen (Tiss) [Ratio]"
},
{
"code" : "62862-8",
"display" : "Microsatellite instability Immune stain Ql (Tiss)"
},
{
"code" : "81704-9",
"display" : "Microsatellite instability marker D17S250 Ql (Cancer specimen)"
},
{
"code" : "94077-5",
"display" : "Tumor mutation burden Ql (Tumor) [Interp]"
}
]
},
{
"system" : "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl",
"concept" : [
{
"code" : "C120465",
"display" : "Homologous Recombination Repair Deficiency"
}
]
}
]
}
}
IG © 2022+ HL7 International / Clinical Genomics. Package hl7.fhir.uv.genomics-reporting#3.0.0 based on FHIR 4.0.1. Generated 2024-11-19
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