NHS North West Genomics
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NHS North West Genomics, published by NHS North West Genomics. This guide is not an authorized publication; it is the continuous build for version 0.2.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/nw-gmsa.github.com/ and changes regularly. See the Directory of published versions

: iGene Codes - JSON Representation

Active as of 2026-02-17

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{
  "resourceType" : "CodeSystem",
  "id" : "IGENE",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem IGENE</b></p><a name=\"IGENE\"> </a><a name=\"hcIGENE\"> </a><p>This case-sensitive code system <code>https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE</code> provides <b>a fragment</b> that includes following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: Urine<a name=\"IGENE-SAMPLE.58Urine\"> </a></td><td>Urine</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: TC<a name=\"IGENE-SAMPLE.58TC\"> </a></td><td>Tissue</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: SALIVA<a name=\"IGENE-SAMPLE.58SALIVA\"> </a></td><td>Saliva</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: PERICARDIAL FLUID<a name=\"IGENE-SAMPLE.58PERICARDIALFLUID\"> </a></td><td>Pericardial fluid</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: No sample received<a name=\"IGENE-SAMPLE.58Nosamplereceived\"> </a></td><td>No Sample Received</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: Lyophilised cell pellet<a name=\"IGENE-SAMPLE.58Lyophilisedcellpellet\"> </a></td><td>Lyophilised cell pellet</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: Liquid Biopsy<a name=\"IGENE-SAMPLE.58LiquidBiopsy\"> </a></td><td>Liquid Biopsy</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: FFPE-WB<a name=\"IGENE-SAMPLE.58FFPE-WB\"> </a></td><td>FFPE - Wax block</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: FFPE-SL<a name=\"IGENE-SAMPLE.58FFPE-SL\"> </a></td><td>FFPE - Slides</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: FFPE-SH<a name=\"IGENE-SAMPLE.58FFPE-SH\"> </a></td><td>FFPE - Shavings</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: FFPE-PCS<a name=\"IGENE-SAMPLE.58FFPE-PCS\"> </a></td><td>FFPE - Positively Charged Slides</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: Cystic fluid<a name=\"IGENE-SAMPLE.58Cysticfluid\"> </a></td><td>Cystic fluid</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: CVB\tChorionic<a name=\"IGENE-SAMPLE.58CVB.9Chorionic\"> </a></td><td>Villus Biopsy</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: Cult Cells<a name=\"IGENE-SAMPLE.58CultCells\"> </a></td><td>Cultured Cells</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: CSF<a name=\"IGENE-SAMPLE.58CSF\"> </a></td><td>Cerebrospinal fluid</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: Cell Pellet<a name=\"IGENE-SAMPLE.58CellPellet\"> </a></td><td>Cell Pellet</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: BSP<a name=\"IGENE-SAMPLE.58BSP\"> </a></td><td>Blood Spot</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: BS<a name=\"IGENE-SAMPLE.58BS\"> </a></td><td>Buccal Swab</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: BM<a name=\"IGENE-SAMPLE.58BM\"> </a></td><td>Bone Marrow</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: BL<a name=\"IGENE-SAMPLE.58BL\"> </a></td><td>Blood</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: Ascitic fluid<a name=\"IGENE-SAMPLE.58Asciticfluid\"> </a></td><td>Ascitic Fluid</td></tr><tr><td style=\"white-space:nowrap\">SAMPLE: AF<a name=\"IGENE-SAMPLE.58AF\"> </a></td><td>Amniotic Fluid</td></tr><tr><td style=\"white-space:nowrap\">Pl F<a name=\"IGENE-PlF\"> </a></td><td>Pleural fluid</td></tr></table></div>"
  },
  "url" : "https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE",
  "version" : "0.2.1",
  "name" : "IGENE",
  "title" : "iGene Codes",
  "status" : "active",
  "experimental" : false,
  "date" : "2026-02-17",
  "publisher" : "NHS North West Genomics",
  "contact" : [
    {
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://www.nwgenomics.nhs.uk/contact-us"
        }
      ]
    }
  ],
  "description" : "iGene Codes",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "urn:iso:std:iso:3166",
          "code" : "GB",
          "display" : "United Kingdom of Great Britain and Northern Ireland"
        }
      ]
    }
  ],
  "caseSensitive" : true,
  "content" : "fragment",
  "concept" : [
    {
      "code" : "SAMPLE: Urine",
      "display" : "Urine"
    },
    {
      "code" : "SAMPLE: TC",
      "display" : "Tissue"
    },
    {
      "code" : "SAMPLE: SALIVA",
      "display" : "Saliva"
    },
    {
      "code" : "SAMPLE: PERICARDIAL FLUID",
      "display" : "Pericardial fluid"
    },
    {
      "code" : "SAMPLE: No sample received",
      "display" : "No Sample Received"
    },
    {
      "code" : "SAMPLE: Lyophilised cell pellet",
      "display" : "Lyophilised cell pellet"
    },
    {
      "code" : "SAMPLE: Liquid Biopsy",
      "display" : "Liquid Biopsy"
    },
    {
      "code" : "SAMPLE: FFPE-WB",
      "display" : "FFPE - Wax block"
    },
    {
      "code" : "SAMPLE: FFPE-SL",
      "display" : "FFPE - Slides"
    },
    {
      "code" : "SAMPLE: FFPE-SH",
      "display" : "FFPE - Shavings"
    },
    {
      "code" : "SAMPLE: FFPE-PCS",
      "display" : "FFPE - Positively Charged Slides"
    },
    {
      "code" : "SAMPLE: Cystic fluid",
      "display" : "Cystic fluid"
    },
    {
      "code" : "SAMPLE: CVB\tChorionic",
      "display" : "Villus Biopsy"
    },
    {
      "code" : "SAMPLE: Cult Cells",
      "display" : "Cultured Cells"
    },
    {
      "code" : "SAMPLE: CSF",
      "display" : "Cerebrospinal fluid"
    },
    {
      "code" : "SAMPLE: Cell Pellet",
      "display" : "Cell Pellet"
    },
    {
      "code" : "SAMPLE: BSP",
      "display" : "Blood Spot"
    },
    {
      "code" : "SAMPLE: BS",
      "display" : "Buccal Swab"
    },
    {
      "code" : "SAMPLE: BM",
      "display" : "Bone Marrow"
    },
    {
      "code" : "SAMPLE: BL",
      "display" : "Blood"
    },
    {
      "code" : "SAMPLE: Ascitic fluid",
      "display" : "Ascitic Fluid"
    },
    {
      "code" : "SAMPLE: AF",
      "display" : "Amniotic Fluid"
    },
    {
      "code" : "Pl F",
      "display" : "Pleural fluid"
    }
  ]
}