NHS North West Genomics
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NHS North West Genomics, published by NHS North West Genomics. This guide is not an authorized publication; it is the continuous build for version 0.2.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/nw-gmsa/nw-gmsa.github.com/ and changes regularly. See the Directory of published versions

: iGene Codes - XML Representation

Active as of 2026-02-17

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<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="IGENE"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem IGENE</b></p><a name="IGENE"> </a><a name="hcIGENE"> </a><p>This case-sensitive code system <code>https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE</code> provides <b>a fragment</b> that includes following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style="white-space:nowrap">SAMPLE: Urine<a name="IGENE-SAMPLE.58Urine"> </a></td><td>Urine</td></tr><tr><td style="white-space:nowrap">SAMPLE: TC<a name="IGENE-SAMPLE.58TC"> </a></td><td>Tissue</td></tr><tr><td style="white-space:nowrap">SAMPLE: SALIVA<a name="IGENE-SAMPLE.58SALIVA"> </a></td><td>Saliva</td></tr><tr><td style="white-space:nowrap">SAMPLE: PERICARDIAL FLUID<a name="IGENE-SAMPLE.58PERICARDIALFLUID"> </a></td><td>Pericardial fluid</td></tr><tr><td style="white-space:nowrap">SAMPLE: No sample received<a name="IGENE-SAMPLE.58Nosamplereceived"> </a></td><td>No Sample Received</td></tr><tr><td style="white-space:nowrap">SAMPLE: Lyophilised cell pellet<a name="IGENE-SAMPLE.58Lyophilisedcellpellet"> </a></td><td>Lyophilised cell pellet</td></tr><tr><td style="white-space:nowrap">SAMPLE: Liquid Biopsy<a name="IGENE-SAMPLE.58LiquidBiopsy"> </a></td><td>Liquid Biopsy</td></tr><tr><td style="white-space:nowrap">SAMPLE: FFPE-WB<a name="IGENE-SAMPLE.58FFPE-WB"> </a></td><td>FFPE - Wax block</td></tr><tr><td style="white-space:nowrap">SAMPLE: FFPE-SL<a name="IGENE-SAMPLE.58FFPE-SL"> </a></td><td>FFPE - Slides</td></tr><tr><td style="white-space:nowrap">SAMPLE: FFPE-SH<a name="IGENE-SAMPLE.58FFPE-SH"> </a></td><td>FFPE - Shavings</td></tr><tr><td style="white-space:nowrap">SAMPLE: FFPE-PCS<a name="IGENE-SAMPLE.58FFPE-PCS"> </a></td><td>FFPE - Positively Charged Slides</td></tr><tr><td style="white-space:nowrap">SAMPLE: Cystic fluid<a name="IGENE-SAMPLE.58Cysticfluid"> </a></td><td>Cystic fluid</td></tr><tr><td style="white-space:nowrap">SAMPLE: CVB	Chorionic<a name="IGENE-SAMPLE.58CVB.9Chorionic"> </a></td><td>Villus Biopsy</td></tr><tr><td style="white-space:nowrap">SAMPLE: Cult Cells<a name="IGENE-SAMPLE.58CultCells"> </a></td><td>Cultured Cells</td></tr><tr><td style="white-space:nowrap">SAMPLE: CSF<a name="IGENE-SAMPLE.58CSF"> </a></td><td>Cerebrospinal fluid</td></tr><tr><td style="white-space:nowrap">SAMPLE: Cell Pellet<a name="IGENE-SAMPLE.58CellPellet"> </a></td><td>Cell Pellet</td></tr><tr><td style="white-space:nowrap">SAMPLE: BSP<a name="IGENE-SAMPLE.58BSP"> </a></td><td>Blood Spot</td></tr><tr><td style="white-space:nowrap">SAMPLE: BS<a name="IGENE-SAMPLE.58BS"> </a></td><td>Buccal Swab</td></tr><tr><td style="white-space:nowrap">SAMPLE: BM<a name="IGENE-SAMPLE.58BM"> </a></td><td>Bone Marrow</td></tr><tr><td style="white-space:nowrap">SAMPLE: BL<a name="IGENE-SAMPLE.58BL"> </a></td><td>Blood</td></tr><tr><td style="white-space:nowrap">SAMPLE: Ascitic fluid<a name="IGENE-SAMPLE.58Asciticfluid"> </a></td><td>Ascitic Fluid</td></tr><tr><td style="white-space:nowrap">SAMPLE: AF<a name="IGENE-SAMPLE.58AF"> </a></td><td>Amniotic Fluid</td></tr><tr><td style="white-space:nowrap">Pl F<a name="IGENE-PlF"> </a></td><td>Pleural fluid</td></tr></table></div>
  </text>
  <url value="https://fhir.nwgenomics.nhs.uk/CodeSystem/IGENE"/>
  <version value="0.2.1"/>
  <name value="IGENE"/>
  <title value="iGene Codes"/>
  <status value="active"/>
  <experimental value="false"/>
  <date value="2026-02-17"/>
  <publisher value="NHS North West Genomics"/>
  <contact>
    <telecom>
      <system value="url"/>
      <value value="https://www.nwgenomics.nhs.uk/contact-us"/>
    </telecom>
  </contact>
  <description value="iGene Codes"/>
  <jurisdiction>
    <coding>
      <system value="urn:iso:std:iso:3166"/>
      <code value="GB"/>
      <display value="United Kingdom of Great Britain and Northern Ireland"/>
    </coding>
  </jurisdiction>
  <caseSensitive value="true"/>
  <content value="fragment"/>
  <concept>
    <code value="SAMPLE: Urine"/>
    <display value="Urine"/>
  </concept>
  <concept>
    <code value="SAMPLE: TC"/>
    <display value="Tissue"/>
  </concept>
  <concept>
    <code value="SAMPLE: SALIVA"/>
    <display value="Saliva"/>
  </concept>
  <concept>
    <code value="SAMPLE: PERICARDIAL FLUID"/>
    <display value="Pericardial fluid"/>
  </concept>
  <concept>
    <code value="SAMPLE: No sample received"/>
    <display value="No Sample Received"/>
  </concept>
  <concept>
    <code value="SAMPLE: Lyophilised cell pellet"/>
    <display value="Lyophilised cell pellet"/>
  </concept>
  <concept>
    <code value="SAMPLE: Liquid Biopsy"/>
    <display value="Liquid Biopsy"/>
  </concept>
  <concept>
    <code value="SAMPLE: FFPE-WB"/>
    <display value="FFPE - Wax block"/>
  </concept>
  <concept>
    <code value="SAMPLE: FFPE-SL"/>
    <display value="FFPE - Slides"/>
  </concept>
  <concept>
    <code value="SAMPLE: FFPE-SH"/>
    <display value="FFPE - Shavings"/>
  </concept>
  <concept>
    <code value="SAMPLE: FFPE-PCS"/>
    <display value="FFPE - Positively Charged Slides"/>
  </concept>
  <concept>
    <code value="SAMPLE: Cystic fluid"/>
    <display value="Cystic fluid"/>
  </concept>
  <concept>
    <code value="SAMPLE: CVB	Chorionic"/>
    <display value="Villus Biopsy"/>
  </concept>
  <concept>
    <code value="SAMPLE: Cult Cells"/>
    <display value="Cultured Cells"/>
  </concept>
  <concept>
    <code value="SAMPLE: CSF"/>
    <display value="Cerebrospinal fluid"/>
  </concept>
  <concept>
    <code value="SAMPLE: Cell Pellet"/>
    <display value="Cell Pellet"/>
  </concept>
  <concept>
    <code value="SAMPLE: BSP"/>
    <display value="Blood Spot"/>
  </concept>
  <concept>
    <code value="SAMPLE: BS"/>
    <display value="Buccal Swab"/>
  </concept>
  <concept>
    <code value="SAMPLE: BM"/>
    <display value="Bone Marrow"/>
  </concept>
  <concept>
    <code value="SAMPLE: BL"/>
    <display value="Blood"/>
  </concept>
  <concept>
    <code value="SAMPLE: Ascitic fluid"/>
    <display value="Ascitic Fluid"/>
  </concept>
  <concept>
    <code value="SAMPLE: AF"/>
    <display value="Amniotic Fluid"/>
  </concept>
  <concept>
    <code value="Pl F"/>
    <display value="Pleural fluid"/>
  </concept>
</CodeSystem>