GenomicTest logical model - Definitions - PROTECT-CHILD Pediatric Transplant Data Implementation Guide v0.1.0-ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide

0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

Logical Model: PcGenomicTest - Detailed Descriptions

Draft as of 2026-02-09

Definitions for the pc-genomic-test-lm logical model.

Key Elements Table
Differential Elements Table
Snapshot Elements Table

Guidance on how to interpret the contents of this table can be foundhere

0. pc-genomic-test-lm
Definition	Logical model representing the PROTECT-CHILD data model entity `genomic_test`.
Short	GenomicTest logical model
Control	0..*
Is Modifier	false
Logical Model	Instances of this logical model are not marked to be the target of a Reference
2. pc-genomic-test-lm.genomicTestId
Definition	Field `genomic_test_id` from the PROTECT-CHILD data model. Foreign key to `bio_sample`.
Short	Genomic test id
Control	1..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
4. pc-genomic-test-lm.referenceGenomeId
Definition	Field `reference_genome_id` from the PROTECT-CHILD data model. Foreign key to `reference_genome`.
Short	Reference genome id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
6. pc-genomic-test-lm.testName
Definition	Field `test_name` from the PROTECT-CHILD data model.
Short	Test name
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
8. pc-genomic-test-lm.testVersion
Definition	Field `test_version` from the PROTECT-CHILD data model.
Short	Test version
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
10. pc-genomic-test-lm.sequencingDevice
Definition	Field `sequencing_device` from the PROTECT-CHILD data model.
Short	Sequencing device
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
12. pc-genomic-test-lm.targetCapture
Definition	Field `target_capture` from the PROTECT-CHILD data model.
Short	Target capture
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
14. pc-genomic-test-lm.readType
Definition	Field `read_type` from the PROTECT-CHILD data model.
Short	Read type
Control	0..1
Type	CodeableConcept
16. pc-genomic-test-lm.readLength
Definition	Field `read_length` from the PROTECT-CHILD data model.
Short	Read length
Control	0..1
Type	integer
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
18. pc-genomic-test-lm.meanTargetCoverage
Definition	Field `mean_target_coverage` from the PROTECT-CHILD data model.
Short	Mean target coverage
Control	0..1
Type	decimal
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
20. pc-genomic-test-lm.perTargetBaseCover100x
Definition	Field `per_target_base_cover_100x` from the PROTECT-CHILD data model.
Short	Per target base cover 100x
Control	0..1
Type	decimal
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
22. pc-genomic-test-lm.alignmentTools
Definition	Field `alignment_tools` from the PROTECT-CHILD data model.
Short	Alignment tools
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
24. pc-genomic-test-lm.variantCallingTools
Definition	Field `variant_calling_tools` from the PROTECT-CHILD data model.
Short	Variant calling tools
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
26. pc-genomic-test-lm.chromosomeCorrdinate
Definition	Field `chromosome_corrdinate` from the PROTECT-CHILD data model.
Short	Chromosome corrdinate
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
28. pc-genomic-test-lm.annotationTools
Definition	Field `annotation_tools` from the PROTECT-CHILD data model.
Short	Annotation tools
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
30. pc-genomic-test-lm.annotationDatabases
Definition	Field `annotation_databases` from the PROTECT-CHILD data model.
Short	Annotation databases
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be foundhere

0. pc-genomic-test-lm
Definition	Logical model representing the PROTECT-CHILD data model entity `genomic_test`.
Short	GenomicTest logical model
Logical Model	Instances of this logical model are not marked to be the target of a Reference
2. pc-genomic-test-lm.genomicTestId
Definition	Field `genomic_test_id` from the PROTECT-CHILD data model. Foreign key to `bio_sample`.
Short	Genomic test id
Control	1..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
4. pc-genomic-test-lm.referenceGenomeId
Definition	Field `reference_genome_id` from the PROTECT-CHILD data model. Foreign key to `reference_genome`.
Short	Reference genome id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
6. pc-genomic-test-lm.testName
Definition	Field `test_name` from the PROTECT-CHILD data model.
Short	Test name
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
8. pc-genomic-test-lm.testVersion
Definition	Field `test_version` from the PROTECT-CHILD data model.
Short	Test version
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
10. pc-genomic-test-lm.sequencingDevice
Definition	Field `sequencing_device` from the PROTECT-CHILD data model.
Short	Sequencing device
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
12. pc-genomic-test-lm.targetCapture
Definition	Field `target_capture` from the PROTECT-CHILD data model.
Short	Target capture
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
14. pc-genomic-test-lm.readType
Definition	Field `read_type` from the PROTECT-CHILD data model.
Short	Read type
Control	0..1
Type	CodeableConcept
16. pc-genomic-test-lm.readLength
Definition	Field `read_length` from the PROTECT-CHILD data model.
Short	Read length
Control	0..1
Type	integer
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
18. pc-genomic-test-lm.meanTargetCoverage
Definition	Field `mean_target_coverage` from the PROTECT-CHILD data model.
Short	Mean target coverage
Control	0..1
Type	decimal
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
20. pc-genomic-test-lm.perTargetBaseCover100x
Definition	Field `per_target_base_cover_100x` from the PROTECT-CHILD data model.
Short	Per target base cover 100x
Control	0..1
Type	decimal
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
22. pc-genomic-test-lm.alignmentTools
Definition	Field `alignment_tools` from the PROTECT-CHILD data model.
Short	Alignment tools
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
24. pc-genomic-test-lm.variantCallingTools
Definition	Field `variant_calling_tools` from the PROTECT-CHILD data model.
Short	Variant calling tools
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
26. pc-genomic-test-lm.chromosomeCorrdinate
Definition	Field `chromosome_corrdinate` from the PROTECT-CHILD data model.
Short	Chromosome corrdinate
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
28. pc-genomic-test-lm.annotationTools
Definition	Field `annotation_tools` from the PROTECT-CHILD data model.
Short	Annotation tools
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
30. pc-genomic-test-lm.annotationDatabases
Definition	Field `annotation_databases` from the PROTECT-CHILD data model.
Short	Annotation databases
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be foundhere

0. pc-genomic-test-lm
Definition	Logical model representing the PROTECT-CHILD data model entity `genomic_test`.
Short	GenomicTest logical model
Control	0..*
Is Modifier	false
Logical Model	Instances of this logical model are not marked to be the target of a Reference
2. pc-genomic-test-lm.genomicTestId
Definition	Field `genomic_test_id` from the PROTECT-CHILD data model. Foreign key to `bio_sample`.
Short	Genomic test id
Control	1..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
4. pc-genomic-test-lm.referenceGenomeId
Definition	Field `reference_genome_id` from the PROTECT-CHILD data model. Foreign key to `reference_genome`.
Short	Reference genome id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
6. pc-genomic-test-lm.testName
Definition	Field `test_name` from the PROTECT-CHILD data model.
Short	Test name
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
8. pc-genomic-test-lm.testVersion
Definition	Field `test_version` from the PROTECT-CHILD data model.
Short	Test version
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
10. pc-genomic-test-lm.sequencingDevice
Definition	Field `sequencing_device` from the PROTECT-CHILD data model.
Short	Sequencing device
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
12. pc-genomic-test-lm.targetCapture
Definition	Field `target_capture` from the PROTECT-CHILD data model.
Short	Target capture
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
14. pc-genomic-test-lm.readType
Definition	Field `read_type` from the PROTECT-CHILD data model.
Short	Read type
Control	0..1
Type	CodeableConcept
16. pc-genomic-test-lm.readLength
Definition	Field `read_length` from the PROTECT-CHILD data model.
Short	Read length
Control	0..1
Type	integer
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
18. pc-genomic-test-lm.meanTargetCoverage
Definition	Field `mean_target_coverage` from the PROTECT-CHILD data model.
Short	Mean target coverage
Control	0..1
Type	decimal
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
20. pc-genomic-test-lm.perTargetBaseCover100x
Definition	Field `per_target_base_cover_100x` from the PROTECT-CHILD data model.
Short	Per target base cover 100x
Control	0..1
Type	decimal
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
22. pc-genomic-test-lm.alignmentTools
Definition	Field `alignment_tools` from the PROTECT-CHILD data model.
Short	Alignment tools
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
24. pc-genomic-test-lm.variantCallingTools
Definition	Field `variant_calling_tools` from the PROTECT-CHILD data model.
Short	Variant calling tools
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
26. pc-genomic-test-lm.chromosomeCorrdinate
Definition	Field `chromosome_corrdinate` from the PROTECT-CHILD data model.
Short	Chromosome corrdinate
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
28. pc-genomic-test-lm.annotationTools
Definition	Field `annotation_tools` from the PROTECT-CHILD data model.
Short	Annotation tools
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
30. pc-genomic-test-lm.annotationDatabases
Definition	Field `annotation_databases` from the PROTECT-CHILD data model.
Short	Annotation databases
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension

IG © 2025 Protect Child. Package pc.ig#0.1.0-ci-build based on FHIR 4.0.1. Generated 2026-02-09
Links: Table of Contents | QA Report