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PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

: Example Epigenome Study - XML Representation

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<Basic xmlns="http://hl7.org/fhir">
  <id value="epigenome-study-example-1"/>
  <meta>
    <profile
             value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study"/>
  </meta>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Basic epigenome-study-example-1</b></p><a name="epigenome-study-example-1"> </a><a name="hcepigenome-study-example-1"> </a><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px"/><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-epigenome-study.html">Epigenome Study</a></p></div><p><b>Genomic test ID relationship</b>: <a href="Basic-genomic-test-example-1.html">Basic Exome sequencing</a></p><p><b>Bisulfite reference kit</b>: EZ DNA Methylation-Gold Kit</p><p><b>Bisulfite date</b>: 2025-01-10</p><p><b>Age at DNA extraction</b>: 45</p><p><b>Array date</b>: 2025-01-12</p><p><b>SNP reader device</b>: iScan System</p><p><b>Sample type</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/biosample-tissue-type blood}">Blood</span></p><p><b>Pool ID</b>: POOL-01</p><p><b>Sample ID</b>: SAMPLE-123</p><p><b>Sentrix barcode array</b>: 203456789012</p><p><b>Sentrix position</b>: R01C01</p><p><b>Chip type</b>: Infinium MethylationEPIC BeadChip</p><p><b>Manifest number</b>: METH-EPIC-201</p><p><b>Scan date</b>: 2025-01-13</p><p><b>Raw data</b>: gs://bucket/methylation/ES0001/idat/</p><p><b>Target disease ID</b>: OMIM:123456</p><p><b>identifier</b>: <code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/epigenome-study-id</code>/ES0001</p><p><b>code</b>: <span title="Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/epigenome-study-type array}">Methylation array epigenome study</span></p></div>
  </text>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-genomic-test-ref">
    <valueReference>🔗 
      <reference value="Basic/genomic-test-example-1"/>
    </valueReference>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-bisulfite-reference-kit">
    <valueString value="EZ DNA Methylation-Gold Kit"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-bisulfite-date">
    <valueDate value="2025-01-10"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-age-at-dna-extraction">
    <valueDecimal value="45"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-array-date">
    <valueDate value="2025-01-12"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-snp-reader-device">
    <valueString value="iScan System"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-sample-type">
    <valueCodeableConcept>
      <coding>
        <system
                value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/biosample-tissue-type"/>
        <code value="blood"/>
        <display value="Blood"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-pool-id">
    <valueString value="POOL-01"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-sample-id">
    <valueString value="SAMPLE-123"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-sentrix-barcodearray">
    <valueString value="203456789012"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-sentrix-position">
    <valueString value="R01C01"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-chip-type">
    <valueString value="Infinium MethylationEPIC BeadChip"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-manifest-number">
    <valueString value="METH-EPIC-201"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-scan-date">
    <valueDate value="2025-01-13"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-raw-data">
    <valueString value="gs://bucket/methylation/ES0001/idat/"/>
  </extension>
  <extension
             url="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-target-disease-id">
    <valueString value="OMIM:123456"/>
  </extension>
  <identifier>
    <system
            value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/epigenome-study-id"/>
    <value value="ES0001"/>
  </identifier>
  <code>
    <coding>
      <system
              value="https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/epigenome-study-type"/>
      <code value="array"/>
      <display value="Methylation array epigenome study"/>
    </coding>
  </code>
</Basic>