PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: Example Epigenome Study - JSON Representation

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{
  "resourceType" : "Basic",
  "id" : "epigenome-study-example-1",
  "meta" : {
    "profile" : [
      🔗 "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study"
    ]
  },
  "text" : {
    "status" : "extensions",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Basic epigenome-study-example-1</b></p><a name=\"epigenome-study-example-1\"> </a><a name=\"hcepigenome-study-example-1\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-epigenome-study.html\">Epigenome Study</a></p></div><p><b>Genomic test ID relationship</b>: <a href=\"Basic-genomic-test-example-1.html\">Basic Exome sequencing</a></p><p><b>Bisulfite reference kit</b>: EZ DNA Methylation-Gold Kit</p><p><b>Bisulfite date</b>: 2025-01-10</p><p><b>Age at DNA extraction</b>: 45</p><p><b>Array date</b>: 2025-01-12</p><p><b>SNP reader device</b>: iScan System</p><p><b>Sample type</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/biosample-tissue-type blood}\">Blood</span></p><p><b>Pool ID</b>: POOL-01</p><p><b>Sample ID</b>: SAMPLE-123</p><p><b>Sentrix barcode array</b>: 203456789012</p><p><b>Sentrix position</b>: R01C01</p><p><b>Chip type</b>: Infinium MethylationEPIC BeadChip</p><p><b>Manifest number</b>: METH-EPIC-201</p><p><b>Scan date</b>: 2025-01-13</p><p><b>Raw data</b>: gs://bucket/methylation/ES0001/idat/</p><p><b>Target disease ID</b>: OMIM:123456</p><p><b>identifier</b>: <code>https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/epigenome-study-id</code>/ES0001</p><p><b>code</b>: <span title=\"Codes:{https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/epigenome-study-type array}\">Methylation array epigenome study</span></p></div>"
  },
  "extension" : [
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-genomic-test-ref",
      "valueReference" : {
        🔗 "reference" : "Basic/genomic-test-example-1"
      }
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-bisulfite-reference-kit",
      "valueString" : "EZ DNA Methylation-Gold Kit"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-bisulfite-date",
      "valueDate" : "2025-01-10"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-age-at-dna-extraction",
      "valueDecimal" : 45
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-array-date",
      "valueDate" : "2025-01-12"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-snp-reader-device",
      "valueString" : "iScan System"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-sample-type",
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/biosample-tissue-type",
            "code" : "blood",
            "display" : "Blood"
          }
        ]
      }
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-pool-id",
      "valueString" : "POOL-01"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-sample-id",
      "valueString" : "SAMPLE-123"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-sentrix-barcodearray",
      "valueString" : "203456789012"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-sentrix-position",
      "valueString" : "R01C01"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-chip-type",
      "valueString" : "Infinium MethylationEPIC BeadChip"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-manifest-number",
      "valueString" : "METH-EPIC-201"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-scan-date",
      "valueDate" : "2025-01-13"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-raw-data",
      "valueString" : "gs://bucket/methylation/ES0001/idat/"
    },
    {
      "url" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/StructureDefinition/epigenome-study-target-disease-id",
      "valueString" : "OMIM:123456"
    }
  ],
  "identifier" : [
    {
      "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/NamingSystem/epigenome-study-id",
      "value" : "ES0001"
    }
  ],
  "code" : {
    "coding" : [
      {
        "system" : "https://hl7.eu/fhir/ig/hl7.eu.fhir.protect-child/CodeSystem/epigenome-study-type",
        "code" : "array",
        "display" : "Methylation array epigenome study"
      }
    ]
  }
}