Phenomics Exchange for Research and Diagnostics, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/phenomics-exchange-ig/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: muscleBiopsy - XML Representation

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<Specimen xmlns="http://hl7.org/fhir">
  <id value="biosample.specimen.id.2"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/Biosample"/>
  </meta>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative: Specimen </b><a name="biosample.specimen.id.2"> </a><a name="hcbiosample.specimen.id.2"> </a></p><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">ResourceSpecimen &quot;biosample.specimen.id.2&quot; </p><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-Biosample.html">Biosample</a></p></div><p><b>Material Sample</b>: abnormal sample <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (efo#EFO_0009655)</span></p><p><b>identifier</b>: arbitrary identifier</p><p><b>subject</b>: <a href="Patient-Proband1.html">Patient/Proband1</a> &quot; ANYPERSON&quot;</p><h3>Collections</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Collected[x]</b></td><td><b>BodySite</b></td></tr><tr><td style="display: none">*</td><td>2021-01-20</td><td>gastrocnemius <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (uberon#UBERON_0001388)</span></td></tr></table><h3>Processings</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Procedure</b></td></tr><tr><td style="display: none">*</td><td>Muscle Biopsy <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.5.0/CodeSystem-v3-nciThesaurus.html">NCI Thesaurus</a>#NCIT_C51895)</span></td></tr></table></div>
  </text>
  <extension
             url="http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/MaterialSample">
    <valueCodeableConcept>
      <coding>
        <system value="http://github.com/EBISPOT/efo"/>
        <code value="EFO_0009655"/>
        <display value="abnormal sample"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <identifier>
    <value value="arbitrary identifier"/>
  </identifier>
  <subject>🔗 
    <reference value="Patient/Proband1"/>
  </subject>
  <collection>
    <collectedDateTime value="2021-01-20"/>
    <bodySite>
      <coding>
        <system value="http://github.com/obophenotype/uberon"/>
        <code value="UBERON_0001388"/>
        <display value="gastrocnemius"/>
      </coding>
    </bodySite>
  </collection>
  <processing>
    <procedure>
      <coding>
        <system value="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl"/>
        <code value="NCIT_C51895"/>
        <display value="Muscle Biopsy"/>
      </coding>
    </procedure>
  </processing>
</Specimen>