Phenomics Exchange for Research and Diagnostics
0.1.0 - ci-build International flag

Phenomics Exchange for Research and Diagnostics, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/phenomics-exchange-ig/ and changes regularly. See the Directory of published versions

: muscleBiopsy - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:Specimen ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "biosample.specimen.id.2"] ; # 
  fhir:meta [
    ( fhir:profile [
fhir:v "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/Biosample"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/Biosample>     ] )
  ] ; # 
  fhir:text [
fhir:status [ fhir:v "extensions" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Specimen </b><a name=\"biosample.specimen.id.2\"> </a><a name=\"hcbiosample.specimen.id.2\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">ResourceSpecimen &quot;biosample.specimen.id.2&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-Biosample.html\">Biosample</a></p></div><p><b>Material Sample</b>: abnormal sample <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (efo#EFO_0009655)</span></p><p><b>identifier</b>: arbitrary identifier</p><p><b>subject</b>: <a href=\"Patient-Proband1.html\">Patient/Proband1</a> &quot; ANYPERSON&quot;</p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collected[x]</b></td><td><b>BodySite</b></td></tr><tr><td style=\"display: none\">*</td><td>2021-01-20</td><td>gastrocnemius <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (uberon#UBERON_0001388)</span></td></tr></table><h3>Processings</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Procedure</b></td></tr><tr><td style=\"display: none\">*</td><td>Muscle Biopsy <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.5.0/CodeSystem-v3-nciThesaurus.html\">NCI Thesaurus</a>#NCIT_C51895)</span></td></tr></table></div>"
  ] ; # 
  fhir:extension ( [
fhir:url [ fhir:v "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/MaterialSample"^^xsd:anyURI ] ;
fhir:value [
a fhir:CodeableConcept ;
      ( fhir:coding [
fhir:system [ fhir:v "http://github.com/EBISPOT/efo"^^xsd:anyURI ] ;
fhir:code [ fhir:v "EFO_0009655" ] ;
fhir:display [ fhir:v "abnormal sample" ]       ] )     ]
  ] ) ; # 
  fhir:identifier ( [
fhir:value [ fhir:v "arbitrary identifier" ]
  ] ) ; # 
  fhir:subject [
fhir:reference [ fhir:v "Patient/Proband1" ]
  ] ; # 
  fhir:collection [
fhir:collected [ fhir:v "2021-01-20"^^xsd:date ] ;
fhir:bodySite [
      ( fhir:coding [
fhir:system [ fhir:v "http://github.com/obophenotype/uberon"^^xsd:anyURI ] ;
fhir:code [ fhir:v "UBERON_0001388" ] ;
fhir:display [ fhir:v "gastrocnemius" ]       ] )     ]
  ] ; # 
  fhir:processing ( [
fhir:procedure [
      ( fhir:coding [
fhir:system [ fhir:v "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl"^^xsd:anyURI ] ;
fhir:code [ fhir:v "NCIT_C51895" ] ;
fhir:display [ fhir:v "Muscle Biopsy" ]       ] )     ]
  ] ) . #