Phenomics Exchange for Research and Diagnostics, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/phenomics-exchange-ig/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: muscleBiopsy - JSON Representation

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{
  "resourceType" : "Specimen",
  "id" : "biosample.specimen.id.2",
  "meta" : {
    "profile" : [
      🔗 "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/Biosample"
    ]
  },
  "text" : {
    "status" : "extensions",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: Specimen </b><a name=\"biosample.specimen.id.2\"> </a><a name=\"hcbiosample.specimen.id.2\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">ResourceSpecimen &quot;biosample.specimen.id.2&quot; </p><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-Biosample.html\">Biosample</a></p></div><p><b>Material Sample</b>: abnormal sample <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (efo#EFO_0009655)</span></p><p><b>identifier</b>: arbitrary identifier</p><p><b>subject</b>: <a href=\"Patient-Proband1.html\">Patient/Proband1</a> &quot; ANYPERSON&quot;</p><h3>Collections</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Collected[x]</b></td><td><b>BodySite</b></td></tr><tr><td style=\"display: none\">*</td><td>2021-01-20</td><td>gastrocnemius <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (uberon#UBERON_0001388)</span></td></tr></table><h3>Processings</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Procedure</b></td></tr><tr><td style=\"display: none\">*</td><td>Muscle Biopsy <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.5.0/CodeSystem-v3-nciThesaurus.html\">NCI Thesaurus</a>#NCIT_C51895)</span></td></tr></table></div>"
  },
  "extension" : [
    {
      "url" : "http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/MaterialSample",
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "http://github.com/EBISPOT/efo",
            "code" : "EFO_0009655",
            "display" : "abnormal sample"
          }
        ]
      }
    }
  ],
  "identifier" : [
    {
      "value" : "arbitrary identifier"
    }
  ],
  "subject" : {
    🔗 "reference" : "Patient/Proband1"
  },
  "collection" : {
    "collectedDateTime" : "2021-01-20",
    "bodySite" : {
      "coding" : [
        {
          "system" : "http://github.com/obophenotype/uberon",
          "code" : "UBERON_0001388",
          "display" : "gastrocnemius"
        }
      ]
    }
  },
  "processing" : [
    {
      "procedure" : {
        "coding" : [
          {
            "system" : "http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl",
            "code" : "NCIT_C51895",
            "display" : "Muscle Biopsy"
          }
        ]
      }
    }
  ]
}