Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions
Page standards status: Draft | Maturity Level: 0 |
<CodeSystem xmlns="http://hl7.org/fhir">
<id value="encodings"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem encodings</b></p><a name="encodings"> </a><a name="hcencodings"> </a><p>This case-sensitive code system <code>http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/encodings</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style="white-space:nowrap">nucleotide-dna-1letter-unambiguous<a name="encodings-nucleotide-dna-1letter-unambiguous"> </a></td><td>Nucleotide DNA 1-letter Unambiguous Symbols</td><td>Single-letter unambiguous symbols for DNA residues (G, A, T, C)</td></tr><tr><td style="white-space:nowrap">nucleotide-rna-1letter-unambiguous<a name="encodings-nucleotide-rna-1letter-unambiguous"> </a></td><td>Nucleotide RNA 1-letter Unambiguous Symbols</td><td>Single-letter unambiguous symbols for RNA residues (G, A, U, C)</td></tr><tr><td style="white-space:nowrap">nucleotide-dna-1letter-with-n<a name="encodings-nucleotide-dna-1letter-with-n"> </a></td><td>Nucleotide DNA 1-letter Symbols Including N</td><td>Single-letter symbols for DNA residues, including N for any nucleotide</td></tr><tr><td style="white-space:nowrap">nucleotide-dna-1letter-ambiguous<a name="encodings-nucleotide-dna-1letter-ambiguous"> </a></td><td>Nucleotide DNA 1-letter Ambiguous Symbols</td><td>Single-letter ambiguous symbols for DNA residues including IUPAC codes</td></tr><tr><td style="white-space:nowrap">amino-acid-1letter-unambiguous<a name="encodings-amino-acid-1letter-unambiguous"> </a></td><td>Amino Acid 1-letter Unambiguous Symbols</td><td>Single-letter unambiguous symbols for the 20 common amino acids</td></tr><tr><td style="white-space:nowrap">amino-acid-3letter-unambiguous<a name="encodings-amino-acid-3letter-unambiguous"> </a></td><td>Amino Acid 3-letter Unambiguous Symbols</td><td>Three-letter unambiguous symbols for the 20 common amino acids</td></tr><tr><td style="white-space:nowrap">amino-acid-1letter-ambiguous<a name="encodings-amino-acid-1letter-ambiguous"> </a></td><td>Amino Acid 1-letter Ambiguous Symbols</td><td>Single-letter symbols for amino acids, including ambiguous symbols</td></tr><tr><td style="white-space:nowrap">amino-acid-3letter-ambiguous<a name="encodings-amino-acid-3letter-ambiguous"> </a></td><td>Amino Acid 3-letter Ambiguous Symbols</td><td>Three-letter symbols for amino acids, including ambiguous symbols</td></tr></table></div>
</text>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
<valueCode value="cg"/>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
<valueInteger value="0">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types"/>
</extension>
</valueInteger>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
<valueCode value="draft">
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
value="http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types"/>
</extension>
</valueCode>
</extension>
<url
value="http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/encodings"/>
<version value="1.0.0-ballot1"/>
<name value="Encodings"/>
<title value="Encodings"/>
<status value="draft"/>
<experimental value="false"/>
<date value="2025-09-05T20:30:49+00:00"/>
<publisher value="HL7 International / Clinical Genomics"/>
<contact>
<name value="HL7 International / Clinical Genomics"/>
<telecom>
<system value="url"/>
<value value="http://www.hl7.org/Special/committees/clingenomics"/>
</telecom>
<telecom>
<system value="email"/>
<value value="cg@lists.HL7.org"/>
</telecom>
</contact>
<description
value="CodeSystem listing the different encodings for nucleotides and amino acids."/>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
<display value="World"/>
</coding>
</jurisdiction>
<caseSensitive value="true"/>
<content value="complete"/>
<count value="8"/>
<concept>
<code value="nucleotide-dna-1letter-unambiguous"/>
<display value="Nucleotide DNA 1-letter Unambiguous Symbols"/>
<definition
value="Single-letter unambiguous symbols for DNA residues (G, A, T, C)"/>
</concept>
<concept>
<code value="nucleotide-rna-1letter-unambiguous"/>
<display value="Nucleotide RNA 1-letter Unambiguous Symbols"/>
<definition
value="Single-letter unambiguous symbols for RNA residues (G, A, U, C)"/>
</concept>
<concept>
<code value="nucleotide-dna-1letter-with-n"/>
<display value="Nucleotide DNA 1-letter Symbols Including N"/>
<definition
value="Single-letter symbols for DNA residues, including N for any nucleotide"/>
</concept>
<concept>
<code value="nucleotide-dna-1letter-ambiguous"/>
<display value="Nucleotide DNA 1-letter Ambiguous Symbols"/>
<definition
value="Single-letter ambiguous symbols for DNA residues including IUPAC codes"/>
</concept>
<concept>
<code value="amino-acid-1letter-unambiguous"/>
<display value="Amino Acid 1-letter Unambiguous Symbols"/>
<definition
value="Single-letter unambiguous symbols for the 20 common amino acids"/>
</concept>
<concept>
<code value="amino-acid-3letter-unambiguous"/>
<display value="Amino Acid 3-letter Unambiguous Symbols"/>
<definition
value="Three-letter unambiguous symbols for the 20 common amino acids"/>
</concept>
<concept>
<code value="amino-acid-1letter-ambiguous"/>
<display value="Amino Acid 1-letter Ambiguous Symbols"/>
<definition
value="Single-letter symbols for amino acids, including ambiguous symbols"/>
</concept>
<concept>
<code value="amino-acid-3letter-ambiguous"/>
<display value="Amino Acid 3-letter Ambiguous Symbols"/>
<definition
value="Three-letter symbols for amino acids, including ambiguous symbols"/>
</concept>
</CodeSystem>