Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build International flag

Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions

CodeSystem: Encodings

Official URL: http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/encodings Version: 1.0.0-ballot1
Standards status: Draft Maturity Level: 0 Computable Name: Encodings

CodeSystem listing the different encodings for nucleotides and amino acids.

This Code system is referenced in the content logical definition of the following value sets:

This case-sensitive code system http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/encodings defines the following codes:

CodeDisplayDefinition
nucleotide-dna-1letter-unambiguous Nucleotide DNA 1-letter Unambiguous Symbols Single-letter unambiguous symbols for DNA residues (G, A, T, C)
nucleotide-rna-1letter-unambiguous Nucleotide RNA 1-letter Unambiguous Symbols Single-letter unambiguous symbols for RNA residues (G, A, U, C)
nucleotide-dna-1letter-with-n Nucleotide DNA 1-letter Symbols Including N Single-letter symbols for DNA residues, including N for any nucleotide
nucleotide-dna-1letter-ambiguous Nucleotide DNA 1-letter Ambiguous Symbols Single-letter ambiguous symbols for DNA residues including IUPAC codes
amino-acid-1letter-unambiguous Amino Acid 1-letter Unambiguous Symbols Single-letter unambiguous symbols for the 20 common amino acids
amino-acid-3letter-unambiguous Amino Acid 3-letter Unambiguous Symbols Three-letter unambiguous symbols for the 20 common amino acids
amino-acid-1letter-ambiguous Amino Acid 1-letter Ambiguous Symbols Single-letter symbols for amino acids, including ambiguous symbols
amino-acid-3letter-ambiguous Amino Acid 3-letter Ambiguous Symbols Three-letter symbols for amino acids, including ambiguous symbols