Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

Resource Profile: GenomicStudyAnalysis - Mappings

Active as of 2024-07-15

Mappings for the genomic-study-analysis resource profile.

Mappings for Workflow Pattern (http://hl7.org/fhir/workflow)

GenomicStudyAnalysis
ProcedureEvent
   identifierEvent.identifier
   instantiatesCanonicalEvent.instantiatesCanonical
   instantiatesUriEvent.instantiatesUri
   statusEvent.status
   subjectEvent.subject
   performed[x]Event.occurrence[x]
   performerEvent.performer
      functionEvent.performer.function
      actorEvent.performer.actor
   noteEvent.note

Mappings for RIM Mapping (http://hl7.org/v3)

GenomicStudyAnalysis
ProcedureEntity. Role, or Act, Procedure[moodCode=EVN]
   textAct.text?
   containedN/A
   modifierExtensionN/A
   identifier.id
   instantiatesCanonical.outboundRelationship[typeCode=DEFN].target
   instantiatesUri.outboundRelationship[typeCode=DEFN].target
   statusstatusCode
   category.outboundRelationship[typeCode="COMP].target[classCode="LIST", moodCode="EVN"].code
      idn/a
      extensionn/a
      codingunion(., ./translation)
      text./originalText[mediaType/code="text/plain"]/data
   subject.participation[typeCode=SBJ].role
   performed[x].effectiveTime
   performer.participation[typeCode=PRF]
      idn/a
      extensionn/a
      modifierExtensionN/A
      function.functionCode
      actor.role
      onBehalfOf.scoper
   note.inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code="annotation"].value

Mappings for FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

GenomicStudyAnalysis
Procedure
   identifierFiveWs.identifier
   statusFiveWs.status
   categoryFiveWs.class
   subjectFiveWs.subject[x], FiveWs.subject
   performed[x]FiveWs.done[x]
   performer
      actorFiveWs.actor

Mappings for HL7 v2 Mapping (http://hl7.org/v2)

GenomicStudyAnalysis
Procedure
   identifierSome combination of ORC-2 / ORC-3 / OBR-2 / OBR-3 / IPC-1 / IPC-2 / IPC-3 / IPC-4
   category
      codingC*E.1-8, C*E.10-22
      textC*E.9. But note many systems use C*E.2 for this
   subjectPID-3
   performed[x]OBR-7
   performer
      functionSome combination of STF-18 / PRA-3 / PRT-4 / ROL-3 / ORC-12 / OBR-16 / PV1-7 / PV1-8 / PV1-9 / PV1-17 / OBX-25
      actorORC-19/PRT-5
   noteNTE