Genomics Reporting Implementation Guide
4.0.0-ballot - STU 4 ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-ballot built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

Resource Profile: GenomicReport - Mappings

Page standards status: Trial-use Maturity Level: 2

Mappings for the genomic-report resource profile.

Mappings to Structures in this Implementation Guide

No Mappings Found

Mappings to other Structures

No Mappings Found

Other Mappings

NameWorkflow PatternHL7 v2 MappingRIM MappingFiveWs Pattern Mappingdoco
.. DiagnosticReport
Event
ORU -> OBR
  • Observation[classCode=OBS
  • moodCode=EVN]
... id
... meta
... implicitRules
... text
Act.text?
... contained
N/A
... Slices for extension
.... extension:recommended-action
.... extension:genomic-risk-assessment
.... extension:coded-note
.... extension:supporting-info
.... extension:genomic-study
.... extension:hla-genotyping-results-allele-database
.... extension:hla-genotyping-results-glstring
.... extension:workflow-relatedArtifact
... modifierExtension
N/A
... identifier
Event.identifier
  • OBR-51/ for globally unique filler ID - OBR-3
  • For non-globally unique filler-id the flller/placer number must be combined with the universal service Id - OBR-2(if present)+OBR-3+OBR-4
id
FiveWs.identifier
... basedOn
Event.basedOn
ORC? OBR-2/3?
outboundRelationship[typeCode=FLFS].target
... status
Event.status
1 mapping)
final and amended are distinguished by whether observation is the subject of a ControlAct event of type "revise"
FiveWs.status
... Slices for category
OBR-24
  • inboundRelationship[typeCode=COMP].source[classCode=LIST
  • moodCode=EVN
  • code < LabService].code
FiveWs.class
.... category:Genetics
OBR-24
  • inboundRelationship[typeCode=COMP].source[classCode=LIST
  • moodCode=EVN
  • code < LabService].code
FiveWs.class
..... id
n/a
..... extension
n/a
..... coding
  • C*E.1-8
  • C*E.10-22
  • union(.
  • ./translation)
..... text
C*E.9. But note many systems use C*E.2 for this
./originalText[mediaType/code="text/plain"]/data
... code
Event.code
OBR-4 (HL7 v2 doesn't provide an easy way to indicate both the ordered test and the performed panel)
code
FiveWs.what[x]
... subject
Event.subject
PID-3 (no HL7 v2 mapping for Group or Device)
participation[typeCode=SBJ]
FiveWs.subject
... encounter
Event.encounter
PV1-19
  • inboundRelationship[typeCode=COMP].source[classCode=ENC
  • moodCode=EVN]
FiveWs.context
... effective[x]
Event.occurrence[x]
OBR-7
effectiveTime
FiveWs.done[x]
... issued
OBR-22
participation[typeCode=VRF or AUT].time
FiveWs.recorded
... performer
Event.performer.actor
PRT-8 (where this PRT-4-Participation = "PO")
.participation[typeCode=PRF]
FiveWs.actor
... resultsInterpreter
Event.performer.actor
  • OBR-32
  • PRT-8 (where this PRT-4-Participation = "PI")
.participation[typeCode=PRF]
FiveWs.actor
... specimen
SPM
participation[typeCode=SBJ]
... Slices for result
OBXs
outboundRelationship[typeCode=COMP].target
.... result:diagnostic-implication
OBXs
outboundRelationship[typeCode=COMP].target
.... result:therapeutic-implication
OBXs
outboundRelationship[typeCode=COMP].target
.... result:molecular-consequence
OBXs
outboundRelationship[typeCode=COMP].target
.... result:variant
OBXs
outboundRelationship[typeCode=COMP].target
.... result:sequence-phase-relation
OBXs
outboundRelationship[typeCode=COMP].target
.... result:genotype
OBXs
outboundRelationship[typeCode=COMP].target
.... result:haplotype
OBXs
outboundRelationship[typeCode=COMP].target
.... result:biomarker
OBXs
outboundRelationship[typeCode=COMP].target
... imagingStudy
  • outboundRelationship[typeCode=COMP].target[classsCode=DGIMG
  • moodCode=EVN]
... media
OBX?
outboundRelationship[typeCode=COMP].target
.... id
n/a
.... extension
n/a
.... modifierExtension
N/A
.... comment
  • .inboundRelationship[typeCode=COMP].source[classCode=OBS
  • moodCode=EVN
  • code="annotation"].value
.... link
.value.reference
... conclusion
OBX
  • inboundRelationship[typeCode="SPRT"].source[classCode=OBS
  • moodCode=EVN
  • 48767-8].value (type=ST)
... conclusionCode
OBX
  • inboundRelationship[typeCode=SPRT].source[classCode=OBS
  • moodCode=EVN
  • 54531-9].value (type=CD)
... presentedForm
OBX
text (type=ED)

doco Documentation for this format