Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: GenRiskDiabetesT2 - JSON Representation

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{
  "resourceType" : "RiskAssessment",
  "id" : "GenRiskDiabetesT2",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative: RiskAssessment</b><a name=\"GenRiskDiabetesT2\"> </a><a name=\"hcGenRiskDiabetesT2\"> </a></p><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\">Resource RiskAssessment &quot;GenRiskDiabetesT2&quot; </p></div><p><b>parent</b>: <a href=\"Observation-PolyGenicDiagnosticImpExample.html\">Observation/PolyGenicDiagnosticImpExample</a></p><p><b>status</b>: final</p><p><b>subject</b>: <a href=\"Patient-CGPatientExample01.html\">Patient/CGPatientExample01</a> &quot; EVERYMAN&quot;</p><p><b>basis</b>: </p><ul><li><span>: Variant 1</span></li><li><span>: Variant 2</span></li><li><span>: Variant 3</span></li><li><span>: Variant 4</span></li><li><span>: Variant 5</span></li><li><span>: Variant 6</span></li><li><span>: Variant 7</span></li></ul><blockquote><p><b>prediction</b></p><p><b>outcome</b>: Diabetes mellitus type 2 (disorder) <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#44054006)</span></p><p><b>probability</b>: 0.26</p><p><b>qualitativeRisk</b>: Low likelihood <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-risk-probability.html\">Risk Probability</a>#low)</span></p><p><b>relativeRisk</b>: 1.05</p><p><b>when</b>: ?-53</p></blockquote><blockquote><p><b>prediction</b></p><p><b>outcome</b>: Diabetes mellitus type 2 (disorder) <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"https://browser.ihtsdotools.org/\">SNOMED CT</a>#44054006)</span></p><p><b>probability</b>: 0.7</p><p><b>qualitativeRisk</b>: High likelihood <span style=\"background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki\"> (<a href=\"http://terminology.hl7.org/5.3.0/CodeSystem-risk-probability.html\">Risk Probability</a>#high)</span></p><p><b>relativeRisk</b>: 2.69</p><p><b>when</b>: ?-65</p></blockquote></div>"
  },
  "parent" : {
    🔗 "reference" : "Observation/PolyGenicDiagnosticImpExample"
  },
  "status" : "final",
  "subject" : {
    🔗 "reference" : "Patient/CGPatientExample01"
  },
  "basis" : [
    {
      "identifier" : {
        "system" : "http://hospital.example.org",
        "value" : "11"
      },
      "display" : "Variant 1"
    },
    {
      "identifier" : {
        "system" : "http://hospital.example.org",
        "value" : "12"
      },
      "display" : "Variant 2"
    },
    {
      "identifier" : {
        "system" : "http://hospital.example.org",
        "value" : "13"
      },
      "display" : "Variant 3"
    },
    {
      "identifier" : {
        "system" : "http://hospital.example.org",
        "value" : "14"
      },
      "display" : "Variant 4"
    },
    {
      "identifier" : {
        "system" : "http://hospital.example.org",
        "value" : "15"
      },
      "display" : "Variant 5"
    },
    {
      "identifier" : {
        "system" : "http://hospital.example.org",
        "value" : "16"
      },
      "display" : "Variant 6"
    },
    {
      "identifier" : {
        "system" : "http://hospital.example.org",
        "value" : "17"
      },
      "display" : "Variant 7"
    }
  ],
  "prediction" : [
    {
      "outcome" : {
        "coding" : [
          {
            "system" : "http://snomed.info/sct",
            "code" : "44054006",
            "display" : "Diabetes mellitus type 2 (disorder)"
          }
        ]
      },
      "probabilityDecimal" : 0.26,
      "qualitativeRisk" : {
        "coding" : [
          {
            "system" : "http://terminology.hl7.org/CodeSystem/risk-probability",
            "code" : "low",
            "display" : "Low likelihood"
          }
        ]
      },
      "relativeRisk" : 1.05,
      "whenRange" : {
        "high" : {
          "value" : 53,
          "unit" : "years",
          "system" : "http://unitsofmeasure.org",
          "code" : "a"
        }
      }
    },
    {
      "outcome" : {
        "coding" : [
          {
            "system" : "http://snomed.info/sct",
            "code" : "44054006",
            "display" : "Diabetes mellitus type 2 (disorder)"
          }
        ]
      },
      "probabilityDecimal" : 0.7,
      "qualitativeRisk" : {
        "coding" : [
          {
            "system" : "http://terminology.hl7.org/CodeSystem/risk-probability",
            "code" : "high",
            "display" : "High likelihood"
          }
        ]
      },
      "relativeRisk" : 2.69,
      "whenRange" : {
        "high" : {
          "value" : 65,
          "unit" : "years",
          "system" : "http://unitsofmeasure.org",
          "code" : "a"
        }
      }
    }
  ]
}