Genomics Reporting Implementation Guide
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Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: PGXGenomicStudy - TTL Representation

Page standards status: Informative

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

<http://hl7.org/fhir/Procedure/PGXGenomicStudy> a fhir:Procedure ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:Resource.id [ fhir:value "PGXGenomicStudy"] ;
  fhir:Resource.meta [
     fhir:Meta.profile [
       fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study" ;
       fhir:index 0 ;
       fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study>
     ]
  ] ;
  fhir:DomainResource.text [
     fhir:Narrative.status [ fhir:value "extensions" ] ;
     fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Procedure PGXGenomicStudy</b></p><a name=\"PGXGenomicStudy\"> </a><a name=\"hcPGXGenomicStudy\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genomic-study.html\">Genomic Study</a></p></div><p><b>Genomic Study Analysis Extension</b>: <a href=\"Procedure-PGXGenomicStudyAnalysis.html\">Procedure: extension = GRCh38,,; status = completed; category = Laboratory; performed[x] = 2021-01-01 01:01:10-0600</a></p><p><b>basedOn</b>: <a href=\"ServiceRequest-eMERGEServiceRequest.html\">ServiceRequest emerge-seq-ngs-pnl</a></p><p><b>status</b>: Completed</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span></p><p><b>code</b>: <span title=\"Codes:\">PGX sequencing panel</span></p><p><b>subject</b>: <a href=\"Patient-CGPatientExample01.html\">Adam B. Everyman  Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))</a></p><p><b>performed</b>: 2021-01-01</p><p><b>note</b>: </p><blockquote><div><p>For technical reasons, PIK3CB was deemed uncallable.</p>\n</div></blockquote></div>"
  ] ;
  fhir:DomainResource.extension [
     fhir:index 0 ;
     fhir:Extension.url [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-study-analysis-ext" ] ;
     fhir:Extension.valueReference [
       fhir:link <http://hl7.org/fhir/Procedure/PGXGenomicStudyAnalysis> ;
       fhir:Reference.reference [ fhir:value "Procedure/PGXGenomicStudyAnalysis" ]
     ]
  ] ;
  fhir:Procedure.basedOn [
     fhir:index 0 ;
     fhir:link <http://hl7.org/fhir/ServiceRequest/eMERGEServiceRequest> ;
     fhir:Reference.reference [ fhir:value "ServiceRequest/eMERGEServiceRequest" ]
  ] ;
  fhir:Procedure.status [ fhir:value "completed"] ;
  fhir:Procedure.category [
     fhir:CodeableConcept.coding [
       fhir:index 0 ;
       fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/observation-category" ] ;
       fhir:Coding.code [ fhir:value "laboratory" ]
     ]
  ] ;
  fhir:Procedure.code [
     fhir:CodeableConcept.text [ fhir:value "PGX sequencing panel" ]
  ] ;
  fhir:Procedure.subject [
     fhir:link <http://hl7.org/fhir/Patient/CGPatientExample01> ;
     fhir:Reference.reference [ fhir:value "Patient/CGPatientExample01" ]
  ] ;
  fhir:Procedure.performedDateTime [ fhir:value "2021-01-01"^^xsd:date] ;
  fhir:Procedure.note [
     fhir:index 0 ;
     fhir:Annotation.text [ fhir:value "For technical reasons, PIK3CB was deemed uncallable." ]
  ] .

<http://hl7.org/fhir/Procedure/PGXGenomicStudyAnalysis> a fhir:Procedure .

<http://hl7.org/fhir/ServiceRequest/eMERGEServiceRequest> a fhir:ServiceRequest .

<http://hl7.org/fhir/Patient/CGPatientExample01> a fhir:Patient .

# - ontology header ------------------------------------------------------------

<http://hl7.org/fhir/Procedure/PGXGenomicStudy.ttl> a owl:Ontology ;
  owl:imports fhir:fhir.ttl ;
  owl:versionIRI <http://build.fhir.org/Procedure/PGXGenomicStudy.ttl> .