Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: haplotype-hla-a-1-r4 - XML Representation

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<Observation xmlns="http://hl7.org/fhir">
  <id value="haplotype-hla-a-1-r4"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/haplotype"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: Observation haplotype-hla-a-1-r4</b></p><a name="haplotype-hla-a-1-r4"> </a><a name="hchaplotype-hla-a-1-r4"> </a><a name="haplotype-hla-a-1-r4-en-US"> </a><p><b>status</b>: Final</p><p><b>category</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}">Laboratory</span>, <span title="Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}">Genetics</span></p><p><b>code</b>: <span title="Codes:{http://loinc.org 84414-2}, {http://loinc.org 57290-9}">Haplotype name</span></p><p><b>subject</b>: <a href="Patient-ExamplePatient.html">Anonymous Patient (no stated gender), DoB Unknown</a></p><p><b>effective</b>: 2018-07-26</p><p><b>performer</b>: aTypingLab, Inc</p><p><b>value</b>: <span title="Codes:{http://www.ebi.ac.uk/ipd/imgt/hla HLA-A*03:01:01:01}">HLA-A*03:01:01:01</span></p><p><b>specimen</b>: <a href="Specimen-specimen-hla-r4.html">Specimen: identifier = http://specimensrus.com#001^123456789; type = Buccal smear sample; receivedTime = 2018-05-01</a></p><h3>Components</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style="display: none">*</td><td><span title="Codes:{http://loinc.org 48018-6}">Gene studied [ID]</span></td><td><span title="Codes:{http://www.genenames.org HGNC:4931}">HLA-A</span></td></tr></table></div>
  </text>
  <status value="final"/>
  <category>
    <coding>
      <system
              value="http://terminology.hl7.org/CodeSystem/observation-category"/>
      <code value="laboratory"/>
    </coding>
  </category>
  <category>
    <coding>
      <system value="http://terminology.hl7.org/CodeSystem/v2-0074"/>
      <code value="GE"/>
    </coding>
  </category>
  <code>
    <coding>
      <system value="http://loinc.org"/>
      <code value="84414-2"/>
      <display value="Haplotype name"/>
    </coding>
    <coding>
      <system value="http://loinc.org"/>
      <code value="57290-9"/>
      <display value="HLA-A [Type] by High resolution"/>
    </coding>
  </code>
  <subject>🔗 
    <reference value="Patient/ExamplePatient"/>
  </subject>
  <effectiveDateTime value="2018-07-26"/>
  <performer>
    <type value="Organization"/>
    <display value="aTypingLab, Inc"/>
  </performer>
  <valueCodeableConcept>
    <coding>
      <system value="http://www.ebi.ac.uk/ipd/imgt/hla"/>
      <version value="3.31.0"/>
      <code value="HLA-A*03:01:01:01"/>
    </coding>
  </valueCodeableConcept>
  <specimen>🔗 
    <reference value="Specimen/specimen-hla-r4"/>
  </specimen>
  <component>
    <code>
      <coding>
        <system value="http://loinc.org"/>
        <code value="48018-6"/>
        <display value="Gene studied [ID]"/>
      </coding>
    </code>
    <valueCodeableConcept>
      <coding>
        <system value="http://www.genenames.org"/>
        <code value="HGNC:4931"/>
        <display value="HLA-A"/>
      </coding>
      <text value="HLA-A"/>
    </valueCodeableConcept>
  </component>
</Observation>