Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: genotype-hla-a-glstring-r4 - JSON Representation

Raw json | Download


{
  "resourceType" : "Observation",
  "id" : "genotype-hla-a-glstring-r4",
  "meta" : {
    "profile" : [
      🔗 "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genotype"
    ]
  },
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: Observation genotype-hla-a-glstring-r4</b></p><a name=\"genotype-hla-a-glstring-r4\"> </a><a name=\"hcgenotype-hla-a-glstring-r4\"> </a><a name=\"genotype-hla-a-glstring-r4-en-US\"> </a><p><b>status</b>: Final</p><p><b>category</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/observation-category laboratory}\">Laboratory</span>, <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span></p><p><b>code</b>: <span title=\"Codes:{http://loinc.org 84413-4}, {http://loinc.org 57290-9}\">Genotype display name</span></p><p><b>subject</b>: <a href=\"Patient-ExamplePatient.html\">Anonymous Patient (no stated gender), DoB Unknown</a></p><p><b>effective</b>: 2018-07-26</p><p><b>performer</b>: aTypingLab, Inc</p><p><b>value</b>: <span title=\"Codes:{http://glstring.org hla#3.31.0#HLA-A*03:01:01:01+HLA-A*30:01:01}\">hla#3.31.0#HLA-A*03:01:01:01+HLA-A*30:01:01</span></p><p><b>method</b>: <span title=\"Codes:\">PACBIO Sequel</span></p><p><b>specimen</b>: <a href=\"Specimen-specimen-hla-r4.html\">Specimen: identifier = http://specimensrus.com#001^123456789; type = Buccal smear sample; receivedTime = 2018-05-01</a></p><p><b>derivedFrom</b>: <a href=\"Observation-haplotype-hla-a-1-r4.html\">Observation Haplotype name</a></p><h3>Components</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Code</b></td><td><b>Value[x]</b></td></tr><tr><td style=\"display: none\">*</td><td><span title=\"Codes:{http://loinc.org 48018-6}\">Gene studied [ID]</span></td><td><span title=\"Codes:{http://www.genenames.org HGNC:4931}\">HLA-A</span></td></tr></table></div>"
  },
  "status" : "final",
  "category" : [
    {
      "coding" : [
        {
          "system" : "http://terminology.hl7.org/CodeSystem/observation-category",
          "code" : "laboratory"
        }
      ]
    },
    {
      "coding" : [
        {
          "system" : "http://terminology.hl7.org/CodeSystem/v2-0074",
          "code" : "GE"
        }
      ]
    }
  ],
  "code" : {
    "coding" : [
      {
        "system" : "http://loinc.org",
        "code" : "84413-4",
        "display" : "Genotype display name"
      },
      {
        "system" : "http://loinc.org",
        "code" : "57290-9",
        "display" : "HLA-A [Type] by High resolution"
      }
    ]
  },
  "subject" : {
    🔗 "reference" : "Patient/ExamplePatient"
  },
  "effectiveDateTime" : "2018-07-26",
  "performer" : [
    {
      "type" : "Organization",
      "display" : "aTypingLab, Inc"
    }
  ],
  "valueCodeableConcept" : {
    "coding" : [
      {
        "system" : "http://glstring.org",
        "version" : "1.0",
        "code" : "hla#3.31.0#HLA-A*03:01:01:01+HLA-A*30:01:01"
      }
    ]
  },
  "method" : {
    "text" : "PACBIO Sequel"
  },
  "specimen" : {
    🔗 "reference" : "Specimen/specimen-hla-r4"
  },
  "derivedFrom" : [
    {
      🔗 "reference" : "Observation/haplotype-hla-a-1-r4"
    }
  ],
  "component" : [
    {
      "code" : {
        "coding" : [
          {
            "system" : "http://loinc.org",
            "code" : "48018-6",
            "display" : "Gene studied [ID]"
          }
        ]
      },
      "valueCodeableConcept" : {
        "coding" : [
          {
            "system" : "http://www.genenames.org",
            "code" : "HGNC:4931",
            "display" : "HLA-A"
          }
        ]
      }
    }
  ]
}