Genomics Reporting Implementation Guide
3.0.1-SNAPSHOT - Ballot International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.1-SNAPSHOT built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: genomicFileMotherBAM - XML Representation

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<DocumentReference xmlns="http://hl7.org/fhir">
  <id value="genomicFileMotherBAM"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: DocumentReference genomicFileMotherBAM</b></p><a name="genomicFileMotherBAM"> </a><a name="hcgenomicFileMotherBAM"> </a><a name="genomicFileMotherBAM-en-US"> </a><p><b>identifier</b>: <code>http://www.somesystemabc.net/identifiers/files</code>/11125</p><p><b>status</b>: Current</p><p><b>docStatus</b>: Preliminary</p><p><b>subject</b>: <a href="Patient-denovoMother.html">Mother Denovo (official) (no stated gender), DoB Unknown ( Medical record number: 0987-11111 (use: temp, ))</a></p><p><b>description</b>: A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/v3-Confidentiality R}">Restricted</span></p><blockquote><p><b>content</b></p><h3>Attachments</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Url</b></td><td><b>Title</b></td></tr><tr><td style="display: none">*</td><td><a href="http://www.somesystemabc.net/identifiers/files/11125">http://www.somesystemabc.net/identifiers/files/11125</a></td><td>Mothers BAM file</td></tr></table></blockquote></div>
  </text>
  <identifier>
    <system value="http://www.somesystemabc.net/identifiers/files"/>
    <value value="11125"/>
  </identifier>
  <status value="current"/>
  <docStatus value="preliminary"/>
  <subject>🔗 
    <reference value="Patient/denovoMother"/>
  </subject>
  <description
               value="A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline."/>
  <securityLabel>
    <coding>
      <system
              value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
      <code value="R"/>
      <display value="Restricted"/>
    </coding>
  </securityLabel>
  <content>
    <attachment>
      <url value="http://www.somesystemabc.net/identifiers/files/11125"/>
      <title value="Mothers BAM file"/>
    </attachment>
  </content>
</DocumentReference>