Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 4.0.0-cibuild built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions
: PGxGenomicReportEMERGE-withGrouping - TTL Representation
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@prefix fhir: <http://hl7.org/fhir/> .
@prefix loinc: <http://loinc.org/rdf#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
# - resource -------------------------------------------------------------------
<http://hl7.org/fhir/DiagnosticReport/PGxGenomicReportEMERGE-withGrouping> a fhir:DiagnosticReport ;
fhir:nodeRole fhir:treeRoot ;
fhir:Resource.id [ fhir:value "PGxGenomicReportEMERGE-withGrouping"] ;
fhir:Resource.meta [
fhir:Meta.profile [
fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report" ;
fhir:index 0 ;
fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report>
]
] ;
fhir:DomainResource.text [
fhir:Narrative.status [ fhir:value "generated" ] ;
fhir:Narrative.div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: DiagnosticReport PGxGenomicReportEMERGE-withGrouping</b></p><a name=\"PGxGenomicReportEMERGE-withGrouping\"> </a><a name=\"hcPGxGenomicReportEMERGE-withGrouping\"> </a><div style=\"display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%\"><p style=\"margin-bottom: 0px\"/><p style=\"margin-bottom: 0px\">Profile: <a href=\"StructureDefinition-genomic-report.html\">Genomic Report</a></p></div><h2><span title=\"Codes:{http://loinc.org 51969-4}, {http://example.org/hgsc.bcm.edu/lab-test-codes/ emerge-seq-ngs-pnl}\">Genetic analysis report</span> (<span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v2-0074 GE}\">Genetics</span>) </h2><table class=\"grid\"><tr><td>Subject</td><td>Adam B. Everyman Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))</td></tr><tr><td>Relevant Time</td><td>2020-01-01 00:00:00-0500</td></tr><tr><td>Reported</td><td>2020-01-01 00:00:00-0500</td></tr><tr><td>Performer</td><td> <a href=\"Organization-ExampleOrg.html\">Organization some lab</a></td></tr></table><p><b>Report Details</b></p><table class=\"grid\"><tr><td><b>Code</b></td><td><b>Value</b></td><td><b>Flags</b></td><td><b>Relevant Time</b></td></tr><tr><td><a href=\"Observation-GrouperEx01.html\"><span title=\"Codes:{http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}\">Group</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href=\"Observation-GrouperEx02.html\"><span title=\"Codes:{http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}\">Group</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr><tr><td><a href=\"Observation-GrouperEx03.html\"><span title=\"Codes:{http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl C43359}\">Group</span></a></td><td/><td>Final</td><td>2019-04-01</td></tr></table></div>"
] ;
fhir:DomainResource.extension [
fhir:index 0 ;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action" ] ;
fhir:Extension.valueReference [
fhir:link <http://hl7.org/fhir/Task/PGxRecEx01> ;
fhir:Reference.reference [ fhir:value "Task/PGxRecEx01" ] ;
fhir:Reference.display [ fhir:value "No clopidogrel" ]
]
], [
fhir:index 1 ;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action" ] ;
fhir:Extension.valueReference [
fhir:link <http://hl7.org/fhir/Task/PGxRecEx02> ;
fhir:Reference.reference [ fhir:value "Task/PGxRecEx02" ] ;
fhir:Reference.display [ fhir:value "No voriconazole" ]
]
], [
fhir:index 2 ;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action" ] ;
fhir:Extension.valueReference [
fhir:link <http://hl7.org/fhir/Task/PGxRecEx03> ;
fhir:Reference.reference [ fhir:value "Task/PGxRecEx03" ] ;
fhir:Reference.display [ fhir:value "50% citalopram" ]
]
], [
fhir:index 3 ;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action" ] ;
fhir:Extension.valueReference [
fhir:link <http://hl7.org/fhir/Task/PGxRecEx04> ;
fhir:Reference.reference [ fhir:value "Task/PGxRecEx04" ] ;
fhir:Reference.display [ fhir:value "50% escitalopram" ]
]
], [
fhir:index 4 ;
fhir:Extension.url [ fhir:value "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/recommended-action" ] ;
fhir:Extension.valueReference [
fhir:link <http://hl7.org/fhir/Task/PGxRecEx04> ;
fhir:Reference.reference [ fhir:value "Task/PGxRecEx04" ] ;
fhir:Reference.display [ fhir:value "50% amitriptyline" ]
]
] ;
fhir:DiagnosticReport.basedOn [
fhir:index 0 ;
fhir:link <http://hl7.org/fhir/ServiceRequest/eMERGEServiceRequest> ;
fhir:Reference.reference [ fhir:value "ServiceRequest/eMERGEServiceRequest" ]
] ;
fhir:DiagnosticReport.status [ fhir:value "final"] ;
fhir:DiagnosticReport.category [
fhir:index 0 ;
fhir:CodeableConcept.coding [
fhir:index 0 ;
fhir:Coding.system [ fhir:value "http://terminology.hl7.org/CodeSystem/v2-0074" ] ;
fhir:Coding.code [ fhir:value "GE" ]
]
] ;
fhir:DiagnosticReport.code [
fhir:CodeableConcept.coding [
fhir:index 0 ;
a loinc:51969-4 ;
fhir:Coding.system [ fhir:value "http://loinc.org" ] ;
fhir:Coding.code [ fhir:value "51969-4" ]
], [
fhir:index 1 ;
fhir:Coding.system [ fhir:value "http://example.org/hgsc.bcm.edu/lab-test-codes/" ] ;
fhir:Coding.code [ fhir:value "emerge-seq-ngs-pnl" ]
]
] ;
fhir:DiagnosticReport.subject [
fhir:link <http://hl7.org/fhir/Patient/CGPatientExample01> ;
fhir:Reference.reference [ fhir:value "Patient/CGPatientExample01" ]
] ;
fhir:DiagnosticReport.effectiveDateTime [ fhir:value "2020-01-01T00:00:00-05:00"^^xsd:dateTime] ;
fhir:DiagnosticReport.issued [ fhir:value "2020-01-01T00:00:00-05:00"^^xsd:dateTime] ;
fhir:DiagnosticReport.performer [
fhir:index 0 ;
fhir:link <http://hl7.org/fhir/Organization/ExampleOrg> ;
fhir:Reference.reference [ fhir:value "Organization/ExampleOrg" ]
] ;
fhir:DiagnosticReport.result [
fhir:index 0 ;
fhir:link <http://hl7.org/fhir/Observation/GrouperEx01> ;
fhir:Reference.reference [ fhir:value "Observation/GrouperEx01" ] ;
fhir:Reference.display [ fhir:value "Therapeutic Implications" ]
], [
fhir:index 1 ;
fhir:link <http://hl7.org/fhir/Observation/GrouperEx02> ;
fhir:Reference.reference [ fhir:value "Observation/GrouperEx02" ] ;
fhir:Reference.display [ fhir:value "Genotypes" ]
], [
fhir:index 2 ;
fhir:link <http://hl7.org/fhir/Observation/GrouperEx03> ;
fhir:Reference.reference [ fhir:value "Observation/GrouperEx03" ] ;
fhir:Reference.display [ fhir:value "Regions studied and Variants" ]
] .
<http://hl7.org/fhir/Task/PGxRecEx01> a fhir:Task .
<http://hl7.org/fhir/Task/PGxRecEx02> a fhir:Task .
<http://hl7.org/fhir/Task/PGxRecEx03> a fhir:Task .
<http://hl7.org/fhir/Task/PGxRecEx04> a fhir:Task .
<http://hl7.org/fhir/ServiceRequest/eMERGEServiceRequest> a fhir:ServiceRequest .
<http://hl7.org/fhir/Patient/CGPatientExample01> a fhir:Patient .
<http://hl7.org/fhir/Organization/ExampleOrg> a fhir:Organization .
<http://hl7.org/fhir/Observation/GrouperEx01> a fhir:Observation .
<http://hl7.org/fhir/Observation/GrouperEx02> a fhir:Observation .
<http://hl7.org/fhir/Observation/GrouperEx03> a fhir:Observation .
# - ontology header ------------------------------------------------------------
<http://hl7.org/fhir/DiagnosticReport/PGxGenomicReportEMERGE-withGrouping.ttl> a owl:Ontology ;
owl:imports fhir:fhir.ttl ;
owl:versionIRI <http://build.fhir.org/DiagnosticReport/PGxGenomicReportEMERGE-withGrouping.ttl> .
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