Genomics Reporting Implementation Guide
3.0.0 - release International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: GenRiskDiabetesT2 - XML Representation

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<RiskAssessment xmlns="http://hl7.org/fhir">
  <id value="GenRiskDiabetesT2"/>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: RiskAssessment GenRiskDiabetesT2</b></p><a name="GenRiskDiabetesT2"> </a><a name="hcGenRiskDiabetesT2"> </a><a name="GenRiskDiabetesT2-en-US"> </a><p><b>parent</b>: <a href="Observation-PolyGenicDiagnosticImpExample.html">Observation Diagnostic Implication</a></p><p><b>status</b>: Final</p><p><b>subject</b>: <a href="Patient-CGPatientExample01.html">Adam B. Everyman  Male, DoB: 1951-01-20 ( Medical Record Number: m123 (use: usual, ))</a></p><p><b>basis</b>: </p><ul><li>Variant 1 (Identifier: <code>http://hospital.example.org</code>/11)</li><li>Variant 2 (Identifier: <code>http://hospital.example.org</code>/12)</li><li>Variant 3 (Identifier: <code>http://hospital.example.org</code>/13)</li><li>Variant 4 (Identifier: <code>http://hospital.example.org</code>/14)</li><li>Variant 5 (Identifier: <code>http://hospital.example.org</code>/15)</li><li>Variant 6 (Identifier: <code>http://hospital.example.org</code>/16)</li><li>Variant 7 (Identifier: <code>http://hospital.example.org</code>/17)</li></ul><blockquote><p><b>prediction</b></p><p><b>outcome</b>: <span title="Codes:{http://snomed.info/sct 44054006}">Diabetes mellitus type 2 (disorder)</span></p><p><b>probability</b>: 0.26</p><p><b>qualitativeRisk</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/risk-probability low}">Low likelihood</span></p><p><b>relativeRisk</b>: 1.05</p><p><b>when</b>: ?-53</p></blockquote><blockquote><p><b>prediction</b></p><p><b>outcome</b>: <span title="Codes:{http://snomed.info/sct 44054006}">Diabetes mellitus type 2 (disorder)</span></p><p><b>probability</b>: 0.7</p><p><b>qualitativeRisk</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/risk-probability high}">High likelihood</span></p><p><b>relativeRisk</b>: 2.69</p><p><b>when</b>: ?-65</p></blockquote></div>
  </text>
  <parent>🔗 
    <reference value="Observation/PolyGenicDiagnosticImpExample"/>
  </parent>
  <status value="final"/>
  <subject>🔗 
    <reference value="Patient/CGPatientExample01"/>
  </subject>
  <basis>
    <identifier>
      <system value="http://hospital.example.org"/>
      <value value="11"/>
    </identifier>
    <display value="Variant 1"/>
  </basis>
  <basis>
    <identifier>
      <system value="http://hospital.example.org"/>
      <value value="12"/>
    </identifier>
    <display value="Variant 2"/>
  </basis>
  <basis>
    <identifier>
      <system value="http://hospital.example.org"/>
      <value value="13"/>
    </identifier>
    <display value="Variant 3"/>
  </basis>
  <basis>
    <identifier>
      <system value="http://hospital.example.org"/>
      <value value="14"/>
    </identifier>
    <display value="Variant 4"/>
  </basis>
  <basis>
    <identifier>
      <system value="http://hospital.example.org"/>
      <value value="15"/>
    </identifier>
    <display value="Variant 5"/>
  </basis>
  <basis>
    <identifier>
      <system value="http://hospital.example.org"/>
      <value value="16"/>
    </identifier>
    <display value="Variant 6"/>
  </basis>
  <basis>
    <identifier>
      <system value="http://hospital.example.org"/>
      <value value="17"/>
    </identifier>
    <display value="Variant 7"/>
  </basis>
  <prediction>
    <outcome>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="44054006"/>
        <display value="Diabetes mellitus type 2 (disorder)"/>
      </coding>
    </outcome>
    <probabilityDecimal value="0.26"/>
    <qualitativeRisk>
      <coding>
        <system
                value="http://terminology.hl7.org/CodeSystem/risk-probability"/>
        <code value="low"/>
        <display value="Low likelihood"/>
      </coding>
    </qualitativeRisk>
    <relativeRisk value="1.05"/>
    <whenRange>
      <high>
        <value value="53"/>
        <unit value="years"/>
        <system value="http://unitsofmeasure.org"/>
        <code value="a"/>
      </high>
    </whenRange>
  </prediction>
  <prediction>
    <outcome>
      <coding>
        <system value="http://snomed.info/sct"/>
        <code value="44054006"/>
        <display value="Diabetes mellitus type 2 (disorder)"/>
      </coding>
    </outcome>
    <probabilityDecimal value="0.7"/>
    <qualitativeRisk>
      <coding>
        <system
                value="http://terminology.hl7.org/CodeSystem/risk-probability"/>
        <code value="high"/>
        <display value="High likelihood"/>
      </coding>
    </qualitativeRisk>
    <relativeRisk value="2.69"/>
    <whenRange>
      <high>
        <value value="65"/>
        <unit value="years"/>
        <system value="http://unitsofmeasure.org"/>
        <code value="a"/>
      </high>
    </whenRange>
  </prediction>
</RiskAssessment>