Genomics Reporting Implementation Guide
3.0.0 - release International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: genomicFileProbandBAM - XML Representation

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<DocumentReference xmlns="http://hl7.org/fhir">
  <id value="genomicFileProbandBAM"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: DocumentReference genomicFileProbandBAM</b></p><a name="genomicFileProbandBAM"> </a><a name="hcgenomicFileProbandBAM"> </a><a name="genomicFileProbandBAM-en-US"> </a><p><b>identifier</b>: <code>http://www.somesystemabc.net/identifiers/files</code>/11118</p><p><b>status</b>: Current</p><p><b>docStatus</b>: Preliminary</p><p><b>subject</b>: <a href="Patient-denovoChild.html">Child Denovo (official) (no stated gender), DoB Unknown ( Medical record number: 1234-11111 (use: temp, ))</a></p><p><b>description</b>: A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: <span title="Codes:{http://terminology.hl7.org/CodeSystem/v3-Confidentiality R}">Restricted</span></p><blockquote><p><b>content</b></p><h3>Attachments</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Url</b></td><td><b>Title</b></td></tr><tr><td style="display: none">*</td><td><a href="http://www.somesystemabc.net/identifiers/files/11111">http://www.somesystemabc.net/identifiers/files/11111</a></td><td>Probands BAM file</td></tr></table></blockquote></div>
  </text>
  <identifier>
    <system value="http://www.somesystemabc.net/identifiers/files"/>
    <value value="11118"/>
  </identifier>
  <status value="current"/>
  <docStatus value="preliminary"/>
  <subject>🔗 
    <reference value="Patient/denovoChild"/>
  </subject>
  <description
               value="A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline."/>
  <securityLabel>
    <coding>
      <system
              value="http://terminology.hl7.org/CodeSystem/v3-Confidentiality"/>
      <code value="R"/>
      <display value="Restricted"/>
    </coding>
  </securityLabel>
  <content>
    <attachment>
      <url value="http://www.somesystemabc.net/identifiers/files/11111"/>
      <title value="Probands BAM file"/>
    </attachment>
  </content>
</DocumentReference>