Genomics Reporting Implementation Guide
3.0.0 - STU3 International flag

Genomics Reporting Implementation Guide, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 3.0.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/genomics-reporting/ and changes regularly. See the Directory of published versions

: genomicFileProbandBAM - TTL Representation

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:DocumentReference ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "genomicFileProbandBAM"] ; # 
  fhir:meta [
    ( fhir:profile [
fhir:v "http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-data-file>     ] )
  ] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: DocumentReference genomicFileProbandBAM</b></p><a name=\"genomicFileProbandBAM\"> </a><a name=\"hcgenomicFileProbandBAM\"> </a><a name=\"genomicFileProbandBAM-en-US\"> </a><p><b>identifier</b>: <code>http://www.somesystemabc.net/identifiers/files</code>/11118</p><p><b>status</b>: Current</p><p><b>docStatus</b>: Preliminary</p><p><b>subject</b>: <a href=\"Patient-denovoChild.html\">Child Denovo (official) (no stated gender), DoB Unknown ( Medical record number: 1234-11111 (use: temp, ))</a></p><p><b>description</b>: A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline.</p><p><b>securityLabel</b>: <span title=\"Codes:{http://terminology.hl7.org/CodeSystem/v3-Confidentiality R}\">Restricted</span></p><blockquote><p><b>content</b></p><h3>Attachments</h3><table class=\"grid\"><tr><td style=\"display: none\">-</td><td><b>Url</b></td><td><b>Title</b></td></tr><tr><td style=\"display: none\">*</td><td><a href=\"http://www.somesystemabc.net/identifiers/files/11111\">http://www.somesystemabc.net/identifiers/files/11111</a></td><td>Probands BAM file</td></tr></table></blockquote></div>"
  ] ; # 
  fhir:identifier ( [
fhir:system [ fhir:v "http://www.somesystemabc.net/identifiers/files"^^xsd:anyURI ] ;
fhir:value [ fhir:v "11118" ]
  ] ) ; # 
  fhir:status [ fhir:v "current"] ; # 
  fhir:docStatus [ fhir:v "preliminary"] ; # 
  fhir:subject [
fhir:reference [ fhir:v "Patient/denovoChild" ]
  ] ; # 
  fhir:description [ fhir:v "A sample Document Reference instance representing a generic genomic file that may ber used as input or output of a genomic analysis pipeline."] ; # 
  fhir:securityLabel ( [
    ( fhir:coding [
fhir:system [ fhir:v "http://terminology.hl7.org/CodeSystem/v3-Confidentiality"^^xsd:anyURI ] ;
fhir:code [ fhir:v "R" ] ;
fhir:display [ fhir:v "Restricted" ]     ] )
  ] ) ; # 
  fhir:content ( [
fhir:attachment [
fhir:url [ fhir:v "http://www.somesystemabc.net/identifiers/files/11111"^^xsd:anyURI ] ;
fhir:title [ fhir:v "Probands BAM file" ]     ]
  ] ) . #