VariantAnnotation logical model - Definitions - PROTECT-CHILD Pediatric Transplant Data Implementation Guide v0.1.0-ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide

0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

Logical Model: PcVariantAnnotation - Detailed Descriptions

Draft as of 2026-02-09

Definitions for the pc-variant-annotation-lm logical model.

Key Elements Table
Differential Elements Table
Snapshot Elements Table

Guidance on how to interpret the contents of this table can be foundhere

0. pc-variant-annotation-lm
Definition	Logical model representing the PROTECT-CHILD data model entity `variant_annotation`.
Short	VariantAnnotation logical model
Control	0..*
Is Modifier	false
Logical Model	Instances of this logical model are not marked to be the target of a Reference
2. pc-variant-annotation-lm.variantAnnotationId
Definition	Field `variant_annotation_id` from the PROTECT-CHILD data model.
Short	Variant annotation id
Control	1..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
4. pc-variant-annotation-lm.variantOccurrenceId
Definition	Field `variant_occurrence_id` from the PROTECT-CHILD data model. Foreign key to `variant_occurrence`.
Short	Variant occurrence id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
6. pc-variant-annotation-lm.annotationDatabase
Definition	Field `annotation_database` from the PROTECT-CHILD data model.
Short	Annotation database
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
8. pc-variant-annotation-lm.variantOrigin
Definition	Field `variant_origin` from the PROTECT-CHILD data model.
Short	Variant origin
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
10. pc-variant-annotation-lm.variantPathogeny
Definition	Field `variant_pathogeny` from the PROTECT-CHILD data model.
Short	Variant pathogeny
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
12. pc-variant-annotation-lm.variantClassLevel
Definition	Field `variant_class_level` from the PROTECT-CHILD data model.
Short	Variant class level
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
14. pc-variant-annotation-lm.variantTierLevel
Definition	Field `variant_tier_level` from the PROTECT-CHILD data model.
Short	Variant tier level
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
16. pc-variant-annotation-lm.alleleFrequency
Definition	Field `allele_frequency` from the PROTECT-CHILD data model.
Short	Allele frequency
Control	0..1
Type	decimal
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
18. pc-variant-annotation-lm.medication
Definition	Field `medication` from the PROTECT-CHILD data model.
Short	Medication
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be foundhere

0. pc-variant-annotation-lm
Definition	Logical model representing the PROTECT-CHILD data model entity `variant_annotation`.
Short	VariantAnnotation logical model
Logical Model	Instances of this logical model are not marked to be the target of a Reference
2. pc-variant-annotation-lm.variantAnnotationId
Definition	Field `variant_annotation_id` from the PROTECT-CHILD data model.
Short	Variant annotation id
Control	1..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
4. pc-variant-annotation-lm.variantOccurrenceId
Definition	Field `variant_occurrence_id` from the PROTECT-CHILD data model. Foreign key to `variant_occurrence`.
Short	Variant occurrence id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
6. pc-variant-annotation-lm.annotationDatabase
Definition	Field `annotation_database` from the PROTECT-CHILD data model.
Short	Annotation database
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
8. pc-variant-annotation-lm.variantOrigin
Definition	Field `variant_origin` from the PROTECT-CHILD data model.
Short	Variant origin
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
10. pc-variant-annotation-lm.variantPathogeny
Definition	Field `variant_pathogeny` from the PROTECT-CHILD data model.
Short	Variant pathogeny
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
12. pc-variant-annotation-lm.variantClassLevel
Definition	Field `variant_class_level` from the PROTECT-CHILD data model.
Short	Variant class level
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
14. pc-variant-annotation-lm.variantTierLevel
Definition	Field `variant_tier_level` from the PROTECT-CHILD data model.
Short	Variant tier level
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
16. pc-variant-annotation-lm.alleleFrequency
Definition	Field `allele_frequency` from the PROTECT-CHILD data model.
Short	Allele frequency
Control	0..1
Type	decimal
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
18. pc-variant-annotation-lm.medication
Definition	Field `medication` from the PROTECT-CHILD data model.
Short	Medication
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be foundhere

0. pc-variant-annotation-lm
Definition	Logical model representing the PROTECT-CHILD data model entity `variant_annotation`.
Short	VariantAnnotation logical model
Control	0..*
Is Modifier	false
Logical Model	Instances of this logical model are not marked to be the target of a Reference
2. pc-variant-annotation-lm.variantAnnotationId
Definition	Field `variant_annotation_id` from the PROTECT-CHILD data model.
Short	Variant annotation id
Control	1..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
4. pc-variant-annotation-lm.variantOccurrenceId
Definition	Field `variant_occurrence_id` from the PROTECT-CHILD data model. Foreign key to `variant_occurrence`.
Short	Variant occurrence id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
6. pc-variant-annotation-lm.annotationDatabase
Definition	Field `annotation_database` from the PROTECT-CHILD data model.
Short	Annotation database
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
8. pc-variant-annotation-lm.variantOrigin
Definition	Field `variant_origin` from the PROTECT-CHILD data model.
Short	Variant origin
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
10. pc-variant-annotation-lm.variantPathogeny
Definition	Field `variant_pathogeny` from the PROTECT-CHILD data model.
Short	Variant pathogeny
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
12. pc-variant-annotation-lm.variantClassLevel
Definition	Field `variant_class_level` from the PROTECT-CHILD data model.
Short	Variant class level
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
14. pc-variant-annotation-lm.variantTierLevel
Definition	Field `variant_tier_level` from the PROTECT-CHILD data model.
Short	Variant tier level
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
16. pc-variant-annotation-lm.alleleFrequency
Definition	Field `allele_frequency` from the PROTECT-CHILD data model.
Short	Allele frequency
Control	0..1
Type	decimal
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
18. pc-variant-annotation-lm.medication
Definition	Field `medication` from the PROTECT-CHILD data model.
Short	Medication
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension

IG © 2025 Protect Child. Package pc.ig#0.1.0-ci-build based on FHIR 4.0.1. Generated 2026-02-09
Links: Table of Contents | QA Report