EpigenomeStudy logical model - Definitions - PROTECT-CHILD Pediatric Transplant Data Implementation Guide v0.1.0-ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide

0.1.0-ci-build -

PROTECT-CHILD Pediatric Transplant Data Implementation Guide
0.1.0-ci-build - ci-build

PROTECT-CHILD Pediatric Transplant Data Implementation Guide, published by Protect Child. This guide is not an authorized publication; it is the continuous build for version 0.1.0-ci-build built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/protect-child/ and changes regularly. See the Directory of published versions

Logical Model: PcEpigenomeStudy - Detailed Descriptions

Draft as of 2026-02-09

Definitions for the pc-epigenome-study-lm logical model.

Key Elements Table
Differential Elements Table
Snapshot Elements Table

Guidance on how to interpret the contents of this table can be foundhere

0. pc-epigenome-study-lm
Definition	Logical model representing the PROTECT-CHILD data model entity `epigenome_study`.
Short	EpigenomeStudy logical model
Control	0..*
Is Modifier	false
Logical Model	Instances of this logical model are not marked to be the target of a Reference
2. pc-epigenome-study-lm.epigenomeStudyId
Definition	Field `epigenome_study_id` from the PROTECT-CHILD data model.
Short	Epigenome study id
Control	1..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
4. pc-epigenome-study-lm.genomicTestId
Definition	Field `genomic_test_id` from the PROTECT-CHILD data model.
Short	Genomic test id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
6. pc-epigenome-study-lm.bisulfiteReferenceKit
Definition	Field `bisulfite_reference_kit` from the PROTECT-CHILD data model.
Short	Bisulfite reference kit
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
8. pc-epigenome-study-lm.bisulfiteDate
Definition	Field `bisulfite_date` from the PROTECT-CHILD data model.
Short	Bisulfite date
Control	0..1
Type	dateTime
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
10. pc-epigenome-study-lm.ageAtDnaExtraction
Definition	Field `age_at_DNA_extraction` from the PROTECT-CHILD data model.
Short	Age at DNA extraction
Control	0..1
Type	integer
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
12. pc-epigenome-study-lm.arrayDate
Definition	Field `array_date` from the PROTECT-CHILD data model.
Short	Array date
Control	0..1
Type	dateTime
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
14. pc-epigenome-study-lm.snpReaderDevice
Definition	Field `SNP_reader_device` from the PROTECT-CHILD data model.
Short	SNP reader device
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
16. pc-epigenome-study-lm.sampleType
Definition	Field `sample_type` from the PROTECT-CHILD data model.
Short	Sample type
Control	0..1
Type	CodeableConcept
18. pc-epigenome-study-lm.poolId
Definition	Field `pool_id` from the PROTECT-CHILD data model.
Short	Pool id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
20. pc-epigenome-study-lm.sampleId
Definition	Field `sample_id` from the PROTECT-CHILD data model.
Short	Sample id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
22. pc-epigenome-study-lm.sentrixBarcodearray
Definition	Field `sentrix_barcodearray` from the PROTECT-CHILD data model.
Short	Sentrix barcodearray
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
24. pc-epigenome-study-lm.sentrixPosition
Definition	Field `sentrix_position` from the PROTECT-CHILD data model.
Short	Sentrix position
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
26. pc-epigenome-study-lm.chipType
Definition	Field `chip_type` from the PROTECT-CHILD data model.
Short	Chip type
Control	0..1
Type	CodeableConcept
28. pc-epigenome-study-lm.manifestNumber
Definition	Field `manifest_number` from the PROTECT-CHILD data model.
Short	Manifest number
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
30. pc-epigenome-study-lm.scanDate
Definition	Field `scan_date` from the PROTECT-CHILD data model.
Short	Scan date
Control	0..1
Type	dateTime
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
32. pc-epigenome-study-lm.rawData
Definition	Field `raw_data` from the PROTECT-CHILD data model.
Short	Raw data
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
34. pc-epigenome-study-lm.targetDiseaseId
Definition	Field `target_disease_ID` from the PROTECT-CHILD data model.
Short	Target disease ID
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be foundhere

0. pc-epigenome-study-lm
Definition	Logical model representing the PROTECT-CHILD data model entity `epigenome_study`.
Short	EpigenomeStudy logical model
Logical Model	Instances of this logical model are not marked to be the target of a Reference
2. pc-epigenome-study-lm.epigenomeStudyId
Definition	Field `epigenome_study_id` from the PROTECT-CHILD data model.
Short	Epigenome study id
Control	1..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
4. pc-epigenome-study-lm.genomicTestId
Definition	Field `genomic_test_id` from the PROTECT-CHILD data model.
Short	Genomic test id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
6. pc-epigenome-study-lm.bisulfiteReferenceKit
Definition	Field `bisulfite_reference_kit` from the PROTECT-CHILD data model.
Short	Bisulfite reference kit
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
8. pc-epigenome-study-lm.bisulfiteDate
Definition	Field `bisulfite_date` from the PROTECT-CHILD data model.
Short	Bisulfite date
Control	0..1
Type	dateTime
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
10. pc-epigenome-study-lm.ageAtDnaExtraction
Definition	Field `age_at_DNA_extraction` from the PROTECT-CHILD data model.
Short	Age at DNA extraction
Control	0..1
Type	integer
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
12. pc-epigenome-study-lm.arrayDate
Definition	Field `array_date` from the PROTECT-CHILD data model.
Short	Array date
Control	0..1
Type	dateTime
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
14. pc-epigenome-study-lm.snpReaderDevice
Definition	Field `SNP_reader_device` from the PROTECT-CHILD data model.
Short	SNP reader device
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
16. pc-epigenome-study-lm.sampleType
Definition	Field `sample_type` from the PROTECT-CHILD data model.
Short	Sample type
Control	0..1
Type	CodeableConcept
18. pc-epigenome-study-lm.poolId
Definition	Field `pool_id` from the PROTECT-CHILD data model.
Short	Pool id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
20. pc-epigenome-study-lm.sampleId
Definition	Field `sample_id` from the PROTECT-CHILD data model.
Short	Sample id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
22. pc-epigenome-study-lm.sentrixBarcodearray
Definition	Field `sentrix_barcodearray` from the PROTECT-CHILD data model.
Short	Sentrix barcodearray
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
24. pc-epigenome-study-lm.sentrixPosition
Definition	Field `sentrix_position` from the PROTECT-CHILD data model.
Short	Sentrix position
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
26. pc-epigenome-study-lm.chipType
Definition	Field `chip_type` from the PROTECT-CHILD data model.
Short	Chip type
Control	0..1
Type	CodeableConcept
28. pc-epigenome-study-lm.manifestNumber
Definition	Field `manifest_number` from the PROTECT-CHILD data model.
Short	Manifest number
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
30. pc-epigenome-study-lm.scanDate
Definition	Field `scan_date` from the PROTECT-CHILD data model.
Short	Scan date
Control	0..1
Type	dateTime
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
32. pc-epigenome-study-lm.rawData
Definition	Field `raw_data` from the PROTECT-CHILD data model.
Short	Raw data
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
34. pc-epigenome-study-lm.targetDiseaseId
Definition	Field `target_disease_ID` from the PROTECT-CHILD data model.
Short	Target disease ID
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension

Guidance on how to interpret the contents of this table can be foundhere

0. pc-epigenome-study-lm
Definition	Logical model representing the PROTECT-CHILD data model entity `epigenome_study`.
Short	EpigenomeStudy logical model
Control	0..*
Is Modifier	false
Logical Model	Instances of this logical model are not marked to be the target of a Reference
2. pc-epigenome-study-lm.epigenomeStudyId
Definition	Field `epigenome_study_id` from the PROTECT-CHILD data model.
Short	Epigenome study id
Control	1..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
4. pc-epigenome-study-lm.genomicTestId
Definition	Field `genomic_test_id` from the PROTECT-CHILD data model.
Short	Genomic test id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
6. pc-epigenome-study-lm.bisulfiteReferenceKit
Definition	Field `bisulfite_reference_kit` from the PROTECT-CHILD data model.
Short	Bisulfite reference kit
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
8. pc-epigenome-study-lm.bisulfiteDate
Definition	Field `bisulfite_date` from the PROTECT-CHILD data model.
Short	Bisulfite date
Control	0..1
Type	dateTime
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
10. pc-epigenome-study-lm.ageAtDnaExtraction
Definition	Field `age_at_DNA_extraction` from the PROTECT-CHILD data model.
Short	Age at DNA extraction
Control	0..1
Type	integer
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
12. pc-epigenome-study-lm.arrayDate
Definition	Field `array_date` from the PROTECT-CHILD data model.
Short	Array date
Control	0..1
Type	dateTime
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
14. pc-epigenome-study-lm.snpReaderDevice
Definition	Field `SNP_reader_device` from the PROTECT-CHILD data model.
Short	SNP reader device
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
16. pc-epigenome-study-lm.sampleType
Definition	Field `sample_type` from the PROTECT-CHILD data model.
Short	Sample type
Control	0..1
Type	CodeableConcept
18. pc-epigenome-study-lm.poolId
Definition	Field `pool_id` from the PROTECT-CHILD data model.
Short	Pool id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
20. pc-epigenome-study-lm.sampleId
Definition	Field `sample_id` from the PROTECT-CHILD data model.
Short	Sample id
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
22. pc-epigenome-study-lm.sentrixBarcodearray
Definition	Field `sentrix_barcodearray` from the PROTECT-CHILD data model.
Short	Sentrix barcodearray
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
24. pc-epigenome-study-lm.sentrixPosition
Definition	Field `sentrix_position` from the PROTECT-CHILD data model.
Short	Sentrix position
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
26. pc-epigenome-study-lm.chipType
Definition	Field `chip_type` from the PROTECT-CHILD data model.
Short	Chip type
Control	0..1
Type	CodeableConcept
28. pc-epigenome-study-lm.manifestNumber
Definition	Field `manifest_number` from the PROTECT-CHILD data model.
Short	Manifest number
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
30. pc-epigenome-study-lm.scanDate
Definition	Field `scan_date` from the PROTECT-CHILD data model.
Short	Scan date
Control	0..1
Type	dateTime
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
32. pc-epigenome-study-lm.rawData
Definition	Field `raw_data` from the PROTECT-CHILD data model.
Short	Raw data
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension
34. pc-epigenome-study-lm.targetDiseaseId
Definition	Field `target_disease_ID` from the PROTECT-CHILD data model.
Short	Target disease ID
Control	0..1
Type	string
Primitive Value	This primitive element may be present, or absent, or replaced by an extension

IG © 2025 Protect Child. Package pc.ig#0.1.0-ci-build based on FHIR 4.0.1. Generated 2026-02-09
Links: Table of Contents | QA Report