IDEA4RC FHIR Implementation Guide
0.1.0 - CI Build 150

IDEA4RC FHIR Implementation Guide, published by IDEA4RC Project. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/idea4rc/ and changes regularly. See the Directory of published versions

: Genetic Test to this guide Map - TTL Representation

Draft as of 2024-11-12

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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:ConceptMap ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "geneticTest2FHIR"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap geneticTest2FHIR</b></p><a name=\"geneticTest2FHIR\"> </a><a name=\"hcgeneticTest2FHIR\"> </a><a name=\"geneticTest2FHIR-en-US\"> </a><p>Mapping from <a href=\"StructureDefinition-GeneticTestExpression.html\">Genetic Test Expression</a> to <a href=\"StructureDefinition-Condition-primaryCancer-eu-i4rc.html\">Condition: Primary Cancer</a></p><br/><p><b>Group 1 </b>Mapping from <a href=\"StructureDefinition-GeneticTestExpression.html\">Genetic Test Expression</a> to <a href=\"StructureDefinition-Condition-primaryCancer-eu-i4rc.html\">Condition: Primary Cancer</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>GeneticTestExpression.episodeEventReference (Cancer Episode Reference)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equal\" title=\"equal\">is equal to</a></td><td>Condition.</td><td/></tr><tr><td>GeneticTestExpression.geneExpressionAnalysisPerformed (Is a gene expression analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneExpressionAnalysisPerformed	'A gene expression analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfGeneExpression (Date of the gene expression analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneExpressionAnalysisPerformed 'A gene expression analysis is performed'</td></tr><tr><td>GeneticTestExpression.geneMutationAnalysisPerformed (Is a gene mutation analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneMutationAnalysisPerformed 'A gene mutation analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfGeneMutation (Date of the gene mutation analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneMutationAnalysisPerformed 'A gene mutation analysis is performed'</td></tr><tr><td>GeneticTestExpression.testsForChromosomeTranslocationsPerformed (Is a tests for chromosome translocations performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#testsForChromosomeTranslocationsPerformed 'A tests for chromosome translocations is performed'</td></tr><tr><td>GeneticTestExpression.dateOfTraslocation (Date of the Chromosome translocation test)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#testsForChromosomeTranslocationsPerformed 'A tests for chromosome translocations is performed'</td></tr><tr><td>GeneticTestExpression.ngsPerformed (Is a NGS analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ngsPerformed	'A NGS analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfNgs (Date of the NGS analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ngsPerformed	'A NGS analysis is performed'</td></tr><tr><td>GeneticTestExpression.pcrTestPerformed (Is a PCR analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#pcrTestPerformed 'A PCR analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfPcr (Date of the PCR analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#pcrTestPerformed 'A PCR analysis is performed'</td></tr><tr><td>GeneticTestExpression.immunohistochemistryPerformed (Is a immunohiostochemestry analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#immunohistochemistryPerformed 'A immunohiostochemestry analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfImmunohistochemistry (Date of the immunohiostochemestry analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#immunohistochemistryPerformed 'A immunohiostochemestry analysis is performed'</td></tr><tr><td>GeneticTestExpression.ctDnaPerformed (Is a ctDNA analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ctDnaPerformed 'A ctDNA analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfCtdna (Date of the ctDNA analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ctDnaPerformed 'A ctDNA analysis is performed'</td></tr></table></div>"
  ] ; # 
  fhir:url [ fhir:v "http://hl7.eu/fhir/ig/idea4rc/ConceptMap/geneticTest2FHIR"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "0.1.0"] ; # 
  fhir:name [ fhir:v "GeneticTest2FHIR"] ; # 
  fhir:title [ fhir:v "Genetic Test to this guide Map"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:experimental [ fhir:v "true"^^xsd:boolean] ; # 
  fhir:date [ fhir:v "2024-11-12T10:15:38+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "IDEA4RC Project"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "IDEA4RC Project" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://www.idea4rc.eu/" ]     ] )
  ] [
fhir:name [ fhir:v "IDEA4RC Project" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "https://www.idea4rc.eu/" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "Genetic Test to this guide Map"] ; # 
  fhir:jurisdiction ( [
    ( fhir:coding [
fhir:system [ fhir:v "http://unstats.un.org/unsd/methods/m49/m49.htm"^^xsd:anyURI ] ;
fhir:code [ fhir:v "150" ] ;
fhir:display [ fhir:v "Europe" ]     ] )
  ] ) ; # 
  fhir:purpose [ fhir:v "It shows how the Genetic Test model is mapped into this guide"] ; # 
  fhir:source [ fhir:v "http://hl7.eu/fhir/ig/idea4rc/StructureDefinition/GeneticTestExpression"^^xsd:anyURI] ; # 
  fhir:target [ fhir:v "http://hl7.eu/fhir/ig/idea4rc/StructureDefinition/Condition-primaryCancer-eu-i4rc"^^xsd:anyURI] ; # 
  fhir:group ( [
fhir:source [ fhir:v "http://hl7.eu/fhir/ig/idea4rc/StructureDefinition/GeneticTestExpression"^^xsd:anyURI ] ;
fhir:target [ fhir:v "http://hl7.eu/fhir/ig/idea4rc/StructureDefinition/Condition-primaryCancer-eu-i4rc"^^xsd:anyURI ] ;
    ( fhir:element [
fhir:code [ fhir:v "GeneticTestExpression.episodeEventReference" ] ;
fhir:display [ fhir:v "Cancer Episode Reference" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition." ] ;
fhir:equivalence [ fhir:v "equal" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.geneExpressionAnalysisPerformed" ] ;
fhir:display [ fhir:v "Is a gene expression analysis performed ?" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.valueCodeableConcept" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneExpressionAnalysisPerformed	'A gene expression analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.dateOfGeneExpression" ] ;
fhir:display [ fhir:v "Date of the gene expression analysis" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.effectiveDate" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneExpressionAnalysisPerformed 'A gene expression analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.geneMutationAnalysisPerformed" ] ;
fhir:display [ fhir:v "Is a gene mutation analysis performed ?" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.valueCodeableConcept" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneMutationAnalysisPerformed 'A gene mutation analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.dateOfGeneMutation" ] ;
fhir:display [ fhir:v "Date of the gene mutation analysis" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.effectiveDate" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneMutationAnalysisPerformed 'A gene mutation analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.testsForChromosomeTranslocationsPerformed" ] ;
fhir:display [ fhir:v "Is a tests for chromosome translocations performed ?" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.valueCodeableConcept" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#testsForChromosomeTranslocationsPerformed 'A tests for chromosome translocations is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.dateOfTraslocation" ] ;
fhir:display [ fhir:v "Date of the Chromosome translocation test" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.effectiveDate" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#testsForChromosomeTranslocationsPerformed 'A tests for chromosome translocations is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.ngsPerformed" ] ;
fhir:display [ fhir:v "Is a NGS analysis performed ?" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.valueCodeableConcept" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ngsPerformed	'A NGS analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.dateOfNgs" ] ;
fhir:display [ fhir:v "Date of the NGS analysis" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.effectiveDate" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ngsPerformed	'A NGS analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.pcrTestPerformed" ] ;
fhir:display [ fhir:v "Is a PCR analysis performed ?" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.valueCodeableConcept" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#pcrTestPerformed 'A PCR analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.dateOfPcr" ] ;
fhir:display [ fhir:v "Date of the PCR analysis" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.effectiveDate" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#pcrTestPerformed 'A PCR analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.immunohistochemistryPerformed" ] ;
fhir:display [ fhir:v "Is a immunohiostochemestry analysis performed ?" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.valueCodeableConcept" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#immunohistochemistryPerformed 'A immunohiostochemestry analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.dateOfImmunohistochemistry" ] ;
fhir:display [ fhir:v "Date of the immunohiostochemestry analysis" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.effectiveDate" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#immunohistochemistryPerformed 'A immunohiostochemestry analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.ctDnaPerformed" ] ;
fhir:display [ fhir:v "Is a ctDNA analysis performed ?" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.valueCodeableConcept" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ctDnaPerformed 'A ctDNA analysis is performed'" ]       ] )     ] [
fhir:code [ fhir:v "GeneticTestExpression.dateOfCtdna" ] ;
fhir:display [ fhir:v "Date of the ctDNA analysis" ] ;
      ( fhir:target [
fhir:code [ fhir:v "Condition.evidence:genetic-test.detail.effectiveDate" ] ;
fhir:equivalence [ fhir:v "equivalent" ] ;
fhir:comment [ fhir:v "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ctDnaPerformed 'A ctDNA analysis is performed'" ]       ] )     ] )
  ] ) . #