IDEA4RC FHIR Implementation Guide
0.1.0 - CI Build 150

IDEA4RC FHIR Implementation Guide, published by IDEA4RC Project. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-eu/idea4rc/ and changes regularly. See the Directory of published versions

: Genetic Test to this guide Map - JSON Representation

Draft as of 2024-11-12

Raw json | Download

{
  "resourceType" : "ConceptMap",
  "id" : "geneticTest2FHIR",
  "text" : {
    "status" : "generated",
    "div" : "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: ConceptMap geneticTest2FHIR</b></p><a name=\"geneticTest2FHIR\"> </a><a name=\"hcgeneticTest2FHIR\"> </a><a name=\"geneticTest2FHIR-en-US\"> </a><p>Mapping from <a href=\"StructureDefinition-GeneticTestExpression.html\">Genetic Test Expression</a> to <a href=\"StructureDefinition-Condition-primaryCancer-eu-i4rc.html\">Condition: Primary Cancer</a></p><br/><p><b>Group 1 </b>Mapping from <a href=\"StructureDefinition-GeneticTestExpression.html\">Genetic Test Expression</a> to <a href=\"StructureDefinition-Condition-primaryCancer-eu-i4rc.html\">Condition: Primary Cancer</a></p><table class=\"grid\"><tr><td><b>Source Code</b></td><td><b>Relationship</b></td><td><b>Target Code</b></td><td><b>Comment</b></td></tr><tr><td>GeneticTestExpression.episodeEventReference (Cancer Episode Reference)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equal\" title=\"equal\">is equal to</a></td><td>Condition.</td><td/></tr><tr><td>GeneticTestExpression.geneExpressionAnalysisPerformed (Is a gene expression analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneExpressionAnalysisPerformed\t'A gene expression analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfGeneExpression (Date of the gene expression analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneExpressionAnalysisPerformed 'A gene expression analysis is performed'</td></tr><tr><td>GeneticTestExpression.geneMutationAnalysisPerformed (Is a gene mutation analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneMutationAnalysisPerformed 'A gene mutation analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfGeneMutation (Date of the gene mutation analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneMutationAnalysisPerformed 'A gene mutation analysis is performed'</td></tr><tr><td>GeneticTestExpression.testsForChromosomeTranslocationsPerformed (Is a tests for chromosome translocations performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#testsForChromosomeTranslocationsPerformed 'A tests for chromosome translocations is performed'</td></tr><tr><td>GeneticTestExpression.dateOfTraslocation (Date of the Chromosome translocation test)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#testsForChromosomeTranslocationsPerformed 'A tests for chromosome translocations is performed'</td></tr><tr><td>GeneticTestExpression.ngsPerformed (Is a NGS analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ngsPerformed\t'A NGS analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfNgs (Date of the NGS analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ngsPerformed\t'A NGS analysis is performed'</td></tr><tr><td>GeneticTestExpression.pcrTestPerformed (Is a PCR analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#pcrTestPerformed 'A PCR analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfPcr (Date of the PCR analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#pcrTestPerformed 'A PCR analysis is performed'</td></tr><tr><td>GeneticTestExpression.immunohistochemistryPerformed (Is a immunohiostochemestry analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#immunohistochemistryPerformed 'A immunohiostochemestry analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfImmunohistochemistry (Date of the immunohiostochemestry analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#immunohistochemistryPerformed 'A immunohiostochemestry analysis is performed'</td></tr><tr><td>GeneticTestExpression.ctDnaPerformed (Is a ctDNA analysis performed ?)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.valueCodeableConcept</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ctDnaPerformed 'A ctDNA analysis is performed'</td></tr><tr><td>GeneticTestExpression.dateOfCtdna (Date of the ctDNA analysis)</td><td><a href=\"https://build.fhir.org/ig/HL7/fhir-extensions/CodeSystem-concept-map-equivalence.html#equivalent\" title=\"equivalent\">is equivalent to</a></td><td>Condition.evidence:genetic-test.detail.effectiveDate</td><td>evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ctDnaPerformed 'A ctDNA analysis is performed'</td></tr></table></div>"
  },
  "url" : "http://hl7.eu/fhir/ig/idea4rc/ConceptMap/geneticTest2FHIR",
  "version" : "0.1.0",
  "name" : "GeneticTest2FHIR",
  "title" : "Genetic Test to this guide Map",
  "status" : "draft",
  "experimental" : true,
  "date" : "2024-11-12T10:15:38+00:00",
  "publisher" : "IDEA4RC Project",
  "contact" : [
    {
      "name" : "IDEA4RC Project",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://www.idea4rc.eu/"
        }
      ]
    },
    {
      "name" : "IDEA4RC Project",
      "telecom" : [
        {
          "system" : "url",
          "value" : "https://www.idea4rc.eu/"
        }
      ]
    }
  ],
  "description" : "Genetic Test to this guide Map",
  "jurisdiction" : [
    {
      "coding" : [
        {
          "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
          "code" : "150",
          "display" : "Europe"
        }
      ]
    }
  ],
  "purpose" : "It shows how the Genetic Test model is mapped into this guide",
  "sourceUri" : "http://hl7.eu/fhir/ig/idea4rc/StructureDefinition/GeneticTestExpression",
  "targetUri" : "http://hl7.eu/fhir/ig/idea4rc/StructureDefinition/Condition-primaryCancer-eu-i4rc",
  "group" : [
    {
      "source" : "http://hl7.eu/fhir/ig/idea4rc/StructureDefinition/GeneticTestExpression",
      "target" : "http://hl7.eu/fhir/ig/idea4rc/StructureDefinition/Condition-primaryCancer-eu-i4rc",
      "element" : [
        {
          "code" : "GeneticTestExpression.episodeEventReference",
          "display" : "Cancer Episode Reference",
          "target" : [
            {
              "code" : "Condition.",
              "equivalence" : "equal"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.geneExpressionAnalysisPerformed",
          "display" : "Is a gene expression analysis performed ?",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.valueCodeableConcept",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneExpressionAnalysisPerformed\t'A gene expression analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.dateOfGeneExpression",
          "display" : "Date of the gene expression analysis",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.effectiveDate",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneExpressionAnalysisPerformed 'A gene expression analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.geneMutationAnalysisPerformed",
          "display" : "Is a gene mutation analysis performed ?",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.valueCodeableConcept",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneMutationAnalysisPerformed 'A gene mutation analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.dateOfGeneMutation",
          "display" : "Date of the gene mutation analysis",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.effectiveDate",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#geneMutationAnalysisPerformed 'A gene mutation analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.testsForChromosomeTranslocationsPerformed",
          "display" : "Is a tests for chromosome translocations performed ?",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.valueCodeableConcept",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#testsForChromosomeTranslocationsPerformed 'A tests for chromosome translocations is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.dateOfTraslocation",
          "display" : "Date of the Chromosome translocation test",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.effectiveDate",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#testsForChromosomeTranslocationsPerformed 'A tests for chromosome translocations is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.ngsPerformed",
          "display" : "Is a NGS analysis performed ?",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.valueCodeableConcept",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ngsPerformed\t'A NGS analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.dateOfNgs",
          "display" : "Date of the NGS analysis",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.effectiveDate",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ngsPerformed\t'A NGS analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.pcrTestPerformed",
          "display" : "Is a PCR analysis performed ?",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.valueCodeableConcept",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#pcrTestPerformed 'A PCR analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.dateOfPcr",
          "display" : "Date of the PCR analysis",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.effectiveDate",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#pcrTestPerformed 'A PCR analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.immunohistochemistryPerformed",
          "display" : "Is a immunohiostochemestry analysis performed ?",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.valueCodeableConcept",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#immunohistochemistryPerformed 'A immunohiostochemestry analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.dateOfImmunohistochemistry",
          "display" : "Date of the immunohiostochemestry analysis",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.effectiveDate",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#immunohistochemistryPerformed 'A immunohiostochemestry analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.ctDnaPerformed",
          "display" : "Is a ctDNA analysis performed ?",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.valueCodeableConcept",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ctDnaPerformed 'A ctDNA analysis is performed'"
            }
          ]
        },
        {
          "code" : "GeneticTestExpression.dateOfCtdna",
          "display" : "Date of the ctDNA analysis",
          "target" : [
            {
              "code" : "Condition.evidence:genetic-test.detail.effectiveDate",
              "equivalence" : "equivalent",
              "comment" : "evidence.detail.ofType(Observation) and evidence.detail.resolve().code=CsGenericI4rc#ctDnaPerformed 'A ctDNA analysis is performed'"
            }
          ]
        }
      ]
    }
  ]
}