Phenomics Exchange for Research and Diagnostics
0.1.0 - ci-build International flag

Phenomics Exchange for Research and Diagnostics, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/phenomics-exchange-ig/ and changes regularly. See the Directory of published versions

: bladderCarcinoma - XML Representation

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<Specimen xmlns="http://hl7.org/fhir">
  <id value="bladderCarcinoma"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/Biosample"/>
  </meta>
  <text>
    <status value="extensions"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p><b>Generated Narrative: Specimen </b><a name="bladderCarcinoma"> </a><a name="hcbladderCarcinoma"> </a></p><div style="display: inline-block; background-color: #d9e0e7; padding: 6px; margin: 4px; border: 1px solid #8da1b4; border-radius: 5px; line-height: 60%"><p style="margin-bottom: 0px">ResourceSpecimen &quot;bladderCarcinoma&quot; </p><p style="margin-bottom: 0px">Profile: <a href="StructureDefinition-Biosample.html">Biosample</a></p></div><p><b>Histological Diagnosis</b>: Infiltrating Urothelial Carcinoma <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.5.0/CodeSystem-v3-nciThesaurus.html">NCI Thesaurus</a>#NCIT_C39853)</span></p><p><b>Tumor Progression</b>: Primary Malignant Neoplasm <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.5.0/CodeSystem-v3-nciThesaurus.html">NCI Thesaurus</a>#NCIT_C84509)</span></p><p><b>Tumor Grade</b>: Grade 2 Lesion <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.5.0/CodeSystem-v3-nciThesaurus.html">NCI Thesaurus</a>#NCIT_C36136)</span></p><p><b>Pathological Tumor Stage</b>: Stage II <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.5.0/CodeSystem-v3-nciThesaurus.html">NCI Thesaurus</a>#NCIT_C28054)</span></p><p><b>Pathological TNM Finding</b>: M0 Stage Finding <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.5.0/CodeSystem-v3-nciThesaurus.html">NCI Thesaurus</a>#NCIT_C48699)</span></p><p><b>Material Sample</b>: abnormal sample <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (efo#EFO_0009655)</span></p><p><b>identifier</b>: arbitrary identifier</p><p><b>type</b>: primary tumor sample <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (efo#EFO_0010942)</span></p><p><b>subject</b>: <a href="Patient-example-patient.html">Patient/example-patient</a> &quot; ANYPERSON&quot;</p><h3>Collections</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Collected[x]</b></td><td><b>BodySite</b></td></tr><tr><td style="display: none">*</td><td>2021-01-20</td><td>wall of urinary bladder <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (uberon#UBERON_0001256)</span></td></tr></table><h3>Processings</h3><table class="grid"><tr><td style="display: none">-</td><td><b>Procedure</b></td></tr><tr><td style="display: none">*</td><td>Radical Cystoprostatectomy <span style="background: LightGoldenRodYellow; margin: 4px; border: 1px solid khaki"> (<a href="http://terminology.hl7.org/5.5.0/CodeSystem-v3-nciThesaurus.html">NCI Thesaurus</a>#NCIT_C5189)</span></td></tr></table></div>
  </text>
  <extension
             url="http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/HistologicalDiagnosis">
    <valueCodeableConcept>
      <coding>
        <system value="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl"/>
        <code value="NCIT_C39853"/>
        <display value="Infiltrating Urothelial Carcinoma"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/TumorProgression">
    <valueCodeableConcept>
      <coding>
        <system value="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl"/>
        <code value="NCIT_C84509"/>
        <display value="Primary Malignant Neoplasm"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/TumorGrade">
    <valueCodeableConcept>
      <coding>
        <system value="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl"/>
        <code value="NCIT_C36136"/>
        <display value="Grade 2 Lesion"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/PathologicalStage">
    <valueCodeableConcept>
      <coding>
        <system value="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl"/>
        <code value="NCIT_C28054"/>
        <display value="Stage II"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/PathologicalTnmFinding">
    <valueCodeableConcept>
      <coding>
        <system value="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl"/>
        <code value="NCIT_C48699"/>
        <display value="M0 Stage Finding"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <extension
             url="http://hl7.org/fhir/uv/phenomics-exchange/StructureDefinition/MaterialSample">
    <valueCodeableConcept>
      <coding>
        <system value="http://github.com/EBISPOT/efo"/>
        <code value="EFO_0009655"/>
        <display value="abnormal sample"/>
      </coding>
    </valueCodeableConcept>
  </extension>
  <identifier>
    <value value="arbitrary identifier"/>
  </identifier>
  <type>
    <coding>
      <system value="http://github.com/EBISPOT/efo"/>
      <code value="EFO_0010942"/>
      <display value="primary tumor sample"/>
    </coding>
  </type>
  <subject>🔗 
    <reference value="Patient/example-patient"/>
  </subject>
  <collection>
    <collectedDateTime value="2021-01-20"/>
    <bodySite>
      <coding>
        <system value="http://github.com/obophenotype/uberon"/>
        <code value="UBERON_0001256"/>
        <display value="wall of urinary bladder"/>
      </coding>
    </bodySite>
  </collection>
  <processing>
    <procedure>
      <coding>
        <system value="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl"/>
        <code value="NCIT_C5189"/>
        <display value="Radical Cystoprostatectomy"/>
      </coding>
    </procedure>
  </processing>
</Specimen>