Phenomics Exchange for Research and Diagnostics, published by HL7 International / Clinical Interoperability Council. This guide is not an authorized publication; it is the continuous build for version 0.1.0 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/phenomics-exchange-ig/ and changes regularly. See the Directory of published versions

• Narrative Content
• XML
• JSON
• TTL

: HTS Format - XML Representation

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<CodeSystem xmlns="http://hl7.org/fhir">
  <id value="HtsFormat"/>
  <meta>
    <profile
             value="http://hl7.org/fhir/StructureDefinition/shareablecodesystem"/>
  </meta>
  <text>
    <status value="generated"/>
    <div xmlns="http://www.w3.org/1999/xhtml"><p>This case-sensitive code system <code>http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td></tr><tr><td style="white-space:nowrap">UNKNOWN<a name="HtsFormat-UNKNOWN"> </a></td><td>Unknown</td></tr><tr><td style="white-space:nowrap">SAM<a name="HtsFormat-SAM"> </a></td><td>SAM</td></tr><tr><td style="white-space:nowrap">BAM<a name="HtsFormat-BAM"> </a></td><td>BAM</td></tr><tr><td style="white-space:nowrap">CRAM<a name="HtsFormat-CRAM"> </a></td><td>CRAM</td></tr><tr><td style="white-space:nowrap">VCF<a name="HtsFormat-VCF"> </a></td><td>VCF</td></tr><tr><td style="white-space:nowrap">BCF<a name="HtsFormat-BCF"> </a></td><td>BCF</td></tr><tr><td style="white-space:nowrap">GVCF<a name="HtsFormat-GVCF"> </a></td><td>GVCF</td></tr></table></div>
  </text>
  <extension
             url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
    <valueCode value="cic"/>
  </extension>
  <url
       value="http://hl7.org/fhir/uv/phenomics-exchange/CodeSystem/HtsFormat"/>
  <version value="0.1.0"/>
  <name value="HtsFormat"/>
  <title value="HTS Format"/>
  <status value="draft"/>
  <experimental value="false"/>
  <date value="2020-02-14T16:13:10+10:00"/>
  <publisher value="HL7 International / Clinical Interoperability Council"/>
  <contact>
    <name value="HL7 International / Clinical Interoperability Council"/>
    <telecom>
      <system value="url"/>
      <value value="http://www.hl7.org/Special/committees/cic"/>
    </telecom>
    <telecom>
      <system value="email"/>
      <value value="cic@lists.HL7.org"/>
    </telecom>
  </contact>
  <description
               value="An enumeration used to represent different high-throughput sequencing file formats."/>
  <jurisdiction>
    <coding>
      <system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
      <code value="001"/>
      <display value="World"/>
    </coding>
  </jurisdiction>
  <copyright
             value="[Global Alliance for Genomics and Health](https://www.ga4gh.org)"/>
  <caseSensitive value="true"/>
  <content value="complete"/>
  <count value="7"/>
  <concept>
    <code value="UNKNOWN"/>
    <display value="Unknown"/>
  </concept>
  <concept>
    <code value="SAM"/>
    <display value="SAM"/>
  </concept>
  <concept>
    <code value="BAM"/>
    <display value="BAM"/>
  </concept>
  <concept>
    <code value="CRAM"/>
    <display value="CRAM"/>
  </concept>
  <concept>
    <code value="VCF"/>
    <display value="VCF"/>
  </concept>
  <concept>
    <code value="BCF"/>
    <display value="BCF"/>
  </concept>
  <concept>
    <code value="GVCF"/>
    <display value="GVCF"/>
  </concept>
</CodeSystem>