Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types
1.0.0-ballot1 - ci-build
Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions
| Page standards status: Draft | Maturity Level: 0 |
<CodeSystem xmlns="http://hl7.org/fhir">
<id value="amino-acid"/>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"><p class="res-header-id"><b>Generated Narrative: CodeSystem amino-acid</b></p><a name="amino-acid"> </a><a name="hcamino-acid"> </a><p>This case-sensitive code system <code>http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/amino-acid</code> defines the following codes:</p><table class="codes"><tr><td style="white-space:nowrap"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style="white-space:nowrap">A<a name="amino-acid-A"> </a></td><td>Alanine</td><td>A</td></tr><tr><td style="white-space:nowrap">C<a name="amino-acid-C"> </a></td><td>Cysteine</td><td>C</td></tr><tr><td style="white-space:nowrap">D<a name="amino-acid-D"> </a></td><td>Aspartic acid</td><td>D</td></tr><tr><td style="white-space:nowrap">E<a name="amino-acid-E"> </a></td><td>Glutamic acid</td><td>E</td></tr><tr><td style="white-space:nowrap">F<a name="amino-acid-F"> </a></td><td>Phenylalanine</td><td>F</td></tr><tr><td style="white-space:nowrap">G<a name="amino-acid-G"> </a></td><td>Glycine</td><td>G</td></tr><tr><td style="white-space:nowrap">H<a name="amino-acid-H"> </a></td><td>Histidine</td><td>H</td></tr><tr><td style="white-space:nowrap">I<a name="amino-acid-I"> </a></td><td>Isoleucine</td><td>I</td></tr><tr><td style="white-space:nowrap">K<a name="amino-acid-K"> </a></td><td>Lysine</td><td>K</td></tr><tr><td style="white-space:nowrap">L<a name="amino-acid-L"> </a></td><td>Leucine</td><td>L</td></tr><tr><td style="white-space:nowrap">M<a name="amino-acid-M"> </a></td><td>Methionine</td><td>M</td></tr><tr><td style="white-space:nowrap">N<a name="amino-acid-N"> </a></td><td>Asparagine</td><td>N</td></tr><tr><td style="white-space:nowrap">P<a name="amino-acid-P"> </a></td><td>Proline</td><td>P</td></tr><tr><td style="white-space:nowrap">Q<a name="amino-acid-Q"> </a></td><td>Glutamine</td><td>Q</td></tr><tr><td style="white-space:nowrap">R<a name="amino-acid-R"> </a></td><td>Arginine</td><td>R</td></tr><tr><td style="white-space:nowrap">S<a name="amino-acid-S"> </a></td><td>Serine</td><td>S</td></tr><tr><td style="white-space:nowrap">T<a name="amino-acid-T"> </a></td><td>Threonine</td><td>T</td></tr><tr><td style="white-space:nowrap">V<a name="amino-acid-V"> </a></td><td>Valine</td><td>V</td></tr><tr><td style="white-space:nowrap">W<a name="amino-acid-W"> </a></td><td>Tryptophan</td><td>W</td></tr><tr><td style="white-space:nowrap">Y<a name="amino-acid-Y"> </a></td><td>Tyrosine</td><td>Y</td></tr><tr><td style="white-space:nowrap">B<a name="amino-acid-B"> </a></td><td>Aspartic acid or asparagine</td><td>D or N</td></tr><tr><td style="white-space:nowrap">U<a name="amino-acid-U"> </a></td><td>Selenocysteine</td><td>U</td></tr><tr><td style="white-space:nowrap">X<a name="amino-acid-X"> </a></td><td>Unknown or other amino acid</td><td>Any amino acid</td></tr><tr><td style="white-space:nowrap">Z<a name="amino-acid-Z"> </a></td><td>Glutamic acid or glutamine</td><td>E or Q</td></tr><tr><td style="white-space:nowrap">Ala<a name="amino-acid-Ala"> </a></td><td>Alanine</td><td>Ala</td></tr><tr><td style="white-space:nowrap">Cys<a name="amino-acid-Cys"> </a></td><td>Cysteine</td><td>Cys</td></tr><tr><td style="white-space:nowrap">Asp<a name="amino-acid-Asp"> </a></td><td>Aspartic acid</td><td>Asp</td></tr><tr><td style="white-space:nowrap">Glu<a name="amino-acid-Glu"> </a></td><td>Glutamic acid</td><td>Glu</td></tr><tr><td style="white-space:nowrap">Phe<a name="amino-acid-Phe"> </a></td><td>Phenylalanine</td><td>Phe</td></tr><tr><td style="white-space:nowrap">Gly<a name="amino-acid-Gly"> </a></td><td>Glycine</td><td>Gly</td></tr><tr><td style="white-space:nowrap">His<a name="amino-acid-His"> </a></td><td>Histidine</td><td>His</td></tr><tr><td style="white-space:nowrap">Ile<a name="amino-acid-Ile"> </a></td><td>Isoleucine</td><td>Ile</td></tr><tr><td style="white-space:nowrap">Lys<a name="amino-acid-Lys"> </a></td><td>Lysine</td><td>Lys</td></tr><tr><td style="white-space:nowrap">Leu<a name="amino-acid-Leu"> </a></td><td>Leucine</td><td>Leu</td></tr><tr><td style="white-space:nowrap">Met<a name="amino-acid-Met"> </a></td><td>Methionine</td><td>Met</td></tr><tr><td style="white-space:nowrap">Asn<a name="amino-acid-Asn"> </a></td><td>Asparagine</td><td>Asn</td></tr><tr><td style="white-space:nowrap">Pro<a name="amino-acid-Pro"> </a></td><td>Proline</td><td>Pro</td></tr><tr><td style="white-space:nowrap">Gln<a name="amino-acid-Gln"> </a></td><td>Glutamine</td><td>Gln</td></tr><tr><td style="white-space:nowrap">Arg<a name="amino-acid-Arg"> </a></td><td>Arginine</td><td>Arg</td></tr><tr><td style="white-space:nowrap">Ser<a name="amino-acid-Ser"> </a></td><td>Serine</td><td>Ser</td></tr><tr><td style="white-space:nowrap">Thr<a name="amino-acid-Thr"> </a></td><td>Threonine</td><td>Thr</td></tr><tr><td style="white-space:nowrap">Val<a name="amino-acid-Val"> </a></td><td>Valine</td><td>Val</td></tr><tr><td style="white-space:nowrap">Trp<a name="amino-acid-Trp"> </a></td><td>Tryptophan</td><td>Trp</td></tr><tr><td style="white-space:nowrap">Tyr<a name="amino-acid-Tyr"> </a></td><td>Tyrosine</td><td>Tyr</td></tr><tr><td style="white-space:nowrap">Asx<a name="amino-acid-Asx"> </a></td><td>Aspartic acid or asparagine</td><td>Asp or Asn</td></tr><tr><td style="white-space:nowrap">Sec<a name="amino-acid-Sec"> </a></td><td>Selenocysteine</td><td>Sec</td></tr><tr><td style="white-space:nowrap">Xaa<a name="amino-acid-Xaa"> </a></td><td>Unknown or other amino acid</td><td>Any amino acid</td></tr><tr><td style="white-space:nowrap">Glx<a name="amino-acid-Glx"> </a></td><td>Glutamic acid or glutamine</td><td>Glu or Gln</td></tr></table></div>
</text>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-wg">
<valueCode value="cg"/>
</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm">
<valueInteger value="0">
<extension
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<valueCanonical
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</extension>
<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status">
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<extension
url="http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom">
<valueCanonical
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</valueCode>
</extension>
<url
value="http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/amino-acid"/>
<version value="1.0.0-ballot1"/>
<name value="AminoAcid"/>
<title value="Amino Acid Symbols"/>
<status value="draft"/>
<experimental value="false"/>
<date value="2025-09-05T20:30:49+00:00"/>
<publisher value="HL7 International / Clinical Genomics"/>
<contact>
<name value="HL7 International / Clinical Genomics"/>
<telecom>
<system value="url"/>
<value value="http://www.hl7.org/Special/committees/clingenomics"/>
</telecom>
<telecom>
<system value="email"/>
<value value="cg@lists.HL7.org"/>
</telecom>
</contact>
<description
value="Single-letter and three-letter symbols for amino acids, including unambiguous and ambiguous symbols."/>
<jurisdiction>
<coding>
<system value="http://unstats.un.org/unsd/methods/m49/m49.htm"/>
<code value="001"/>
<display value="World"/>
</coding>
</jurisdiction>
<caseSensitive value="true"/>
<content value="complete"/>
<count value="48"/>
<concept>
<code value="A"/>
<display value="Alanine"/>
<definition value="A"/>
</concept>
<concept>
<code value="C"/>
<display value="Cysteine"/>
<definition value="C"/>
</concept>
<concept>
<code value="D"/>
<display value="Aspartic acid"/>
<definition value="D"/>
</concept>
<concept>
<code value="E"/>
<display value="Glutamic acid"/>
<definition value="E"/>
</concept>
<concept>
<code value="F"/>
<display value="Phenylalanine"/>
<definition value="F"/>
</concept>
<concept>
<code value="G"/>
<display value="Glycine"/>
<definition value="G"/>
</concept>
<concept>
<code value="H"/>
<display value="Histidine"/>
<definition value="H"/>
</concept>
<concept>
<code value="I"/>
<display value="Isoleucine"/>
<definition value="I"/>
</concept>
<concept>
<code value="K"/>
<display value="Lysine"/>
<definition value="K"/>
</concept>
<concept>
<code value="L"/>
<display value="Leucine"/>
<definition value="L"/>
</concept>
<concept>
<code value="M"/>
<display value="Methionine"/>
<definition value="M"/>
</concept>
<concept>
<code value="N"/>
<display value="Asparagine"/>
<definition value="N"/>
</concept>
<concept>
<code value="P"/>
<display value="Proline"/>
<definition value="P"/>
</concept>
<concept>
<code value="Q"/>
<display value="Glutamine"/>
<definition value="Q"/>
</concept>
<concept>
<code value="R"/>
<display value="Arginine"/>
<definition value="R"/>
</concept>
<concept>
<code value="S"/>
<display value="Serine"/>
<definition value="S"/>
</concept>
<concept>
<code value="T"/>
<display value="Threonine"/>
<definition value="T"/>
</concept>
<concept>
<code value="V"/>
<display value="Valine"/>
<definition value="V"/>
</concept>
<concept>
<code value="W"/>
<display value="Tryptophan"/>
<definition value="W"/>
</concept>
<concept>
<code value="Y"/>
<display value="Tyrosine"/>
<definition value="Y"/>
</concept>
<concept>
<code value="B"/>
<display value="Aspartic acid or asparagine"/>
<definition value="D or N"/>
</concept>
<concept>
<code value="U"/>
<display value="Selenocysteine"/>
<definition value="U"/>
</concept>
<concept>
<code value="X"/>
<display value="Unknown or other amino acid"/>
<definition value="Any amino acid"/>
</concept>
<concept>
<code value="Z"/>
<display value="Glutamic acid or glutamine"/>
<definition value="E or Q"/>
</concept>
<concept>
<code value="Ala"/>
<display value="Alanine"/>
<definition value="Ala"/>
</concept>
<concept>
<code value="Cys"/>
<display value="Cysteine"/>
<definition value="Cys"/>
</concept>
<concept>
<code value="Asp"/>
<display value="Aspartic acid"/>
<definition value="Asp"/>
</concept>
<concept>
<code value="Glu"/>
<display value="Glutamic acid"/>
<definition value="Glu"/>
</concept>
<concept>
<code value="Phe"/>
<display value="Phenylalanine"/>
<definition value="Phe"/>
</concept>
<concept>
<code value="Gly"/>
<display value="Glycine"/>
<definition value="Gly"/>
</concept>
<concept>
<code value="His"/>
<display value="Histidine"/>
<definition value="His"/>
</concept>
<concept>
<code value="Ile"/>
<display value="Isoleucine"/>
<definition value="Ile"/>
</concept>
<concept>
<code value="Lys"/>
<display value="Lysine"/>
<definition value="Lys"/>
</concept>
<concept>
<code value="Leu"/>
<display value="Leucine"/>
<definition value="Leu"/>
</concept>
<concept>
<code value="Met"/>
<display value="Methionine"/>
<definition value="Met"/>
</concept>
<concept>
<code value="Asn"/>
<display value="Asparagine"/>
<definition value="Asn"/>
</concept>
<concept>
<code value="Pro"/>
<display value="Proline"/>
<definition value="Pro"/>
</concept>
<concept>
<code value="Gln"/>
<display value="Glutamine"/>
<definition value="Gln"/>
</concept>
<concept>
<code value="Arg"/>
<display value="Arginine"/>
<definition value="Arg"/>
</concept>
<concept>
<code value="Ser"/>
<display value="Serine"/>
<definition value="Ser"/>
</concept>
<concept>
<code value="Thr"/>
<display value="Threonine"/>
<definition value="Thr"/>
</concept>
<concept>
<code value="Val"/>
<display value="Valine"/>
<definition value="Val"/>
</concept>
<concept>
<code value="Trp"/>
<display value="Tryptophan"/>
<definition value="Trp"/>
</concept>
<concept>
<code value="Tyr"/>
<display value="Tyrosine"/>
<definition value="Tyr"/>
</concept>
<concept>
<code value="Asx"/>
<display value="Aspartic acid or asparagine"/>
<definition value="Asp or Asn"/>
</concept>
<concept>
<code value="Sec"/>
<display value="Selenocysteine"/>
<definition value="Sec"/>
</concept>
<concept>
<code value="Xaa"/>
<display value="Unknown or other amino acid"/>
<definition value="Any amino acid"/>
</concept>
<concept>
<code value="Glx"/>
<display value="Glutamic acid or glutamine"/>
<definition value="Glu or Gln"/>
</concept>
</CodeSystem>