Amino Acid Symbols - TTL Representation - Molecular Definition Implementation Guide for Molecular Data Types v1.0.0-ballot1

Molecular Definition Implementation Guide for Molecular Data Types, published by HL7 International / Clinical Genomics. This guide is not an authorized publication; it is the continuous build for version 1.0.0-ballot1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/HL7/molecular-definition-data-types/ and changes regularly. See the Directory of published versions
: Amino Acid Symbols - TTL Representation

Page standards status: Draft
Maturity Level: 0
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@prefix fhir: <http://hl7.org/fhir/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

# - resource -------------------------------------------------------------------

 a fhir:CodeSystem ;
  fhir:nodeRole fhir:treeRoot ;
  fhir:id [ fhir:v "amino-acid"] ; # 
  fhir:text [
fhir:status [ fhir:v "generated" ] ;
fhir:div "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p class=\"res-header-id\"><b>Generated Narrative: CodeSystem amino-acid</b></p><a name=\"amino-acid\"> </a><a name=\"hcamino-acid\"> </a><p>This case-sensitive code system <code>http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/amino-acid</code> defines the following codes:</p><table class=\"codes\"><tr><td style=\"white-space:nowrap\"><b>Code</b></td><td><b>Display</b></td><td><b>Definition</b></td></tr><tr><td style=\"white-space:nowrap\">A<a name=\"amino-acid-A\"> </a></td><td>Alanine</td><td>A</td></tr><tr><td style=\"white-space:nowrap\">C<a name=\"amino-acid-C\"> </a></td><td>Cysteine</td><td>C</td></tr><tr><td style=\"white-space:nowrap\">D<a name=\"amino-acid-D\"> </a></td><td>Aspartic acid</td><td>D</td></tr><tr><td style=\"white-space:nowrap\">E<a name=\"amino-acid-E\"> </a></td><td>Glutamic acid</td><td>E</td></tr><tr><td style=\"white-space:nowrap\">F<a name=\"amino-acid-F\"> </a></td><td>Phenylalanine</td><td>F</td></tr><tr><td style=\"white-space:nowrap\">G<a name=\"amino-acid-G\"> </a></td><td>Glycine</td><td>G</td></tr><tr><td style=\"white-space:nowrap\">H<a name=\"amino-acid-H\"> </a></td><td>Histidine</td><td>H</td></tr><tr><td style=\"white-space:nowrap\">I<a name=\"amino-acid-I\"> </a></td><td>Isoleucine</td><td>I</td></tr><tr><td style=\"white-space:nowrap\">K<a name=\"amino-acid-K\"> </a></td><td>Lysine</td><td>K</td></tr><tr><td style=\"white-space:nowrap\">L<a name=\"amino-acid-L\"> </a></td><td>Leucine</td><td>L</td></tr><tr><td style=\"white-space:nowrap\">M<a name=\"amino-acid-M\"> </a></td><td>Methionine</td><td>M</td></tr><tr><td style=\"white-space:nowrap\">N<a name=\"amino-acid-N\"> </a></td><td>Asparagine</td><td>N</td></tr><tr><td style=\"white-space:nowrap\">P<a name=\"amino-acid-P\"> </a></td><td>Proline</td><td>P</td></tr><tr><td style=\"white-space:nowrap\">Q<a name=\"amino-acid-Q\"> </a></td><td>Glutamine</td><td>Q</td></tr><tr><td style=\"white-space:nowrap\">R<a name=\"amino-acid-R\"> </a></td><td>Arginine</td><td>R</td></tr><tr><td style=\"white-space:nowrap\">S<a name=\"amino-acid-S\"> </a></td><td>Serine</td><td>S</td></tr><tr><td style=\"white-space:nowrap\">T<a name=\"amino-acid-T\"> </a></td><td>Threonine</td><td>T</td></tr><tr><td style=\"white-space:nowrap\">V<a name=\"amino-acid-V\"> </a></td><td>Valine</td><td>V</td></tr><tr><td style=\"white-space:nowrap\">W<a name=\"amino-acid-W\"> </a></td><td>Tryptophan</td><td>W</td></tr><tr><td style=\"white-space:nowrap\">Y<a name=\"amino-acid-Y\"> </a></td><td>Tyrosine</td><td>Y</td></tr><tr><td style=\"white-space:nowrap\">B<a name=\"amino-acid-B\"> </a></td><td>Aspartic acid or asparagine</td><td>D or N</td></tr><tr><td style=\"white-space:nowrap\">U<a name=\"amino-acid-U\"> </a></td><td>Selenocysteine</td><td>U</td></tr><tr><td style=\"white-space:nowrap\">X<a name=\"amino-acid-X\"> </a></td><td>Unknown or other amino acid</td><td>Any amino acid</td></tr><tr><td style=\"white-space:nowrap\">Z<a name=\"amino-acid-Z\"> </a></td><td>Glutamic acid or glutamine</td><td>E or Q</td></tr><tr><td style=\"white-space:nowrap\">Ala<a name=\"amino-acid-Ala\"> </a></td><td>Alanine</td><td>Ala</td></tr><tr><td style=\"white-space:nowrap\">Cys<a name=\"amino-acid-Cys\"> </a></td><td>Cysteine</td><td>Cys</td></tr><tr><td style=\"white-space:nowrap\">Asp<a name=\"amino-acid-Asp\"> </a></td><td>Aspartic acid</td><td>Asp</td></tr><tr><td style=\"white-space:nowrap\">Glu<a name=\"amino-acid-Glu\"> </a></td><td>Glutamic acid</td><td>Glu</td></tr><tr><td style=\"white-space:nowrap\">Phe<a name=\"amino-acid-Phe\"> </a></td><td>Phenylalanine</td><td>Phe</td></tr><tr><td style=\"white-space:nowrap\">Gly<a name=\"amino-acid-Gly\"> </a></td><td>Glycine</td><td>Gly</td></tr><tr><td style=\"white-space:nowrap\">His<a name=\"amino-acid-His\"> </a></td><td>Histidine</td><td>His</td></tr><tr><td style=\"white-space:nowrap\">Ile<a name=\"amino-acid-Ile\"> </a></td><td>Isoleucine</td><td>Ile</td></tr><tr><td style=\"white-space:nowrap\">Lys<a name=\"amino-acid-Lys\"> </a></td><td>Lysine</td><td>Lys</td></tr><tr><td style=\"white-space:nowrap\">Leu<a name=\"amino-acid-Leu\"> </a></td><td>Leucine</td><td>Leu</td></tr><tr><td style=\"white-space:nowrap\">Met<a name=\"amino-acid-Met\"> </a></td><td>Methionine</td><td>Met</td></tr><tr><td style=\"white-space:nowrap\">Asn<a name=\"amino-acid-Asn\"> </a></td><td>Asparagine</td><td>Asn</td></tr><tr><td style=\"white-space:nowrap\">Pro<a name=\"amino-acid-Pro\"> </a></td><td>Proline</td><td>Pro</td></tr><tr><td style=\"white-space:nowrap\">Gln<a name=\"amino-acid-Gln\"> </a></td><td>Glutamine</td><td>Gln</td></tr><tr><td style=\"white-space:nowrap\">Arg<a name=\"amino-acid-Arg\"> </a></td><td>Arginine</td><td>Arg</td></tr><tr><td style=\"white-space:nowrap\">Ser<a name=\"amino-acid-Ser\"> </a></td><td>Serine</td><td>Ser</td></tr><tr><td style=\"white-space:nowrap\">Thr<a name=\"amino-acid-Thr\"> </a></td><td>Threonine</td><td>Thr</td></tr><tr><td style=\"white-space:nowrap\">Val<a name=\"amino-acid-Val\"> </a></td><td>Valine</td><td>Val</td></tr><tr><td style=\"white-space:nowrap\">Trp<a name=\"amino-acid-Trp\"> </a></td><td>Tryptophan</td><td>Trp</td></tr><tr><td style=\"white-space:nowrap\">Tyr<a name=\"amino-acid-Tyr\"> </a></td><td>Tyrosine</td><td>Tyr</td></tr><tr><td style=\"white-space:nowrap\">Asx<a name=\"amino-acid-Asx\"> </a></td><td>Aspartic acid or asparagine</td><td>Asp or Asn</td></tr><tr><td style=\"white-space:nowrap\">Sec<a name=\"amino-acid-Sec\"> </a></td><td>Selenocysteine</td><td>Sec</td></tr><tr><td style=\"white-space:nowrap\">Xaa<a name=\"amino-acid-Xaa\"> </a></td><td>Unknown or other amino acid</td><td>Any amino acid</td></tr><tr><td style=\"white-space:nowrap\">Glx<a name=\"amino-acid-Glx\"> </a></td><td>Glutamic acid or glutamine</td><td>Glu or Gln</td></tr></table></div>"^^rdf:XMLLiteral
  ] ; # 
  fhir:extension ( [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-wg"^^xsd:anyURI ] ;
fhir:value [
a fhir:code ;
fhir:v "cg"     ]
  ] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-fmm"^^xsd:anyURI ] ;
fhir:value [
a fhir:integer ;
fhir:v 0 ;
      ( fhir:extension [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ;
fhir:value [
a fhir:canonical ;
fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types>         ]       ] )     ]
  ] [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-standards-status"^^xsd:anyURI ] ;
fhir:value [
a fhir:code ;
fhir:v "draft" ;
      ( fhir:extension [
fhir:url [ fhir:v "http://hl7.org/fhir/StructureDefinition/structuredefinition-conformance-derivedFrom"^^xsd:anyURI ] ;
fhir:value [
a fhir:canonical ;
fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types"^^xsd:anyURI ;
fhir:link <http://hl7.org/fhir/uv/molecular-definition-data-types/ImplementationGuide/hl7.fhir.uv.molecular-definition-data-types>         ]       ] )     ]
  ] ) ; # 
  fhir:url [ fhir:v "http://hl7.org/fhir/uv/molecular-definition-data-types/CodeSystem/amino-acid"^^xsd:anyURI] ; # 
  fhir:version [ fhir:v "1.0.0-ballot1"] ; # 
  fhir:name [ fhir:v "AminoAcid"] ; # 
  fhir:title [ fhir:v "Amino Acid Symbols"] ; # 
  fhir:status [ fhir:v "draft"] ; # 
  fhir:experimental [ fhir:v false] ; # 
  fhir:date [ fhir:v "2025-09-05T20:30:49+00:00"^^xsd:dateTime] ; # 
  fhir:publisher [ fhir:v "HL7 International / Clinical Genomics"] ; # 
  fhir:contact ( [
fhir:name [ fhir:v "HL7 International / Clinical Genomics" ] ;
    ( fhir:telecom [
fhir:system [ fhir:v "url" ] ;
fhir:value [ fhir:v "http://www.hl7.org/Special/committees/clingenomics" ]     ] [
fhir:system [ fhir:v "email" ] ;
fhir:value [ fhir:v "cg@lists.HL7.org" ]     ] )
  ] ) ; # 
  fhir:description [ fhir:v "Single-letter and three-letter symbols for amino acids, including unambiguous and ambiguous symbols."] ; # 
  fhir:jurisdiction ( [
    ( fhir:coding [
fhir:system [ fhir:v "http://unstats.un.org/unsd/methods/m49/m49.htm"^^xsd:anyURI ] ;
fhir:code [ fhir:v "001" ] ;
fhir:display [ fhir:v "World" ]     ] )
  ] ) ; # 
  fhir:caseSensitive [ fhir:v true] ; # 
  fhir:content [ fhir:v "complete"] ; # 
  fhir:count [ fhir:v "48"^^xsd:nonNegativeInteger] ; # 
  fhir:concept ( [
fhir:code [ fhir:v "A" ] ;
fhir:display [ fhir:v "Alanine" ] ;
fhir:definition [ fhir:v "A" ]
  ] [
fhir:code [ fhir:v "C" ] ;
fhir:display [ fhir:v "Cysteine" ] ;
fhir:definition [ fhir:v "C" ]
  ] [
fhir:code [ fhir:v "D" ] ;
fhir:display [ fhir:v "Aspartic acid" ] ;
fhir:definition [ fhir:v "D" ]
  ] [
fhir:code [ fhir:v "E" ] ;
fhir:display [ fhir:v "Glutamic acid" ] ;
fhir:definition [ fhir:v "E" ]
  ] [
fhir:code [ fhir:v "F" ] ;
fhir:display [ fhir:v "Phenylalanine" ] ;
fhir:definition [ fhir:v "F" ]
  ] [
fhir:code [ fhir:v "G" ] ;
fhir:display [ fhir:v "Glycine" ] ;
fhir:definition [ fhir:v "G" ]
  ] [
fhir:code [ fhir:v "H" ] ;
fhir:display [ fhir:v "Histidine" ] ;
fhir:definition [ fhir:v "H" ]
  ] [
fhir:code [ fhir:v "I" ] ;
fhir:display [ fhir:v "Isoleucine" ] ;
fhir:definition [ fhir:v "I" ]
  ] [
fhir:code [ fhir:v "K" ] ;
fhir:display [ fhir:v "Lysine" ] ;
fhir:definition [ fhir:v "K" ]
  ] [
fhir:code [ fhir:v "L" ] ;
fhir:display [ fhir:v "Leucine" ] ;
fhir:definition [ fhir:v "L" ]
  ] [
fhir:code [ fhir:v "M" ] ;
fhir:display [ fhir:v "Methionine" ] ;
fhir:definition [ fhir:v "M" ]
  ] [
fhir:code [ fhir:v "N" ] ;
fhir:display [ fhir:v "Asparagine" ] ;
fhir:definition [ fhir:v "N" ]
  ] [
fhir:code [ fhir:v "P" ] ;
fhir:display [ fhir:v "Proline" ] ;
fhir:definition [ fhir:v "P" ]
  ] [
fhir:code [ fhir:v "Q" ] ;
fhir:display [ fhir:v "Glutamine" ] ;
fhir:definition [ fhir:v "Q" ]
  ] [
fhir:code [ fhir:v "R" ] ;
fhir:display [ fhir:v "Arginine" ] ;
fhir:definition [ fhir:v "R" ]
  ] [
fhir:code [ fhir:v "S" ] ;
fhir:display [ fhir:v "Serine" ] ;
fhir:definition [ fhir:v "S" ]
  ] [
fhir:code [ fhir:v "T" ] ;
fhir:display [ fhir:v "Threonine" ] ;
fhir:definition [ fhir:v "T" ]
  ] [
fhir:code [ fhir:v "V" ] ;
fhir:display [ fhir:v "Valine" ] ;
fhir:definition [ fhir:v "V" ]
  ] [
fhir:code [ fhir:v "W" ] ;
fhir:display [ fhir:v "Tryptophan" ] ;
fhir:definition [ fhir:v "W" ]
  ] [
fhir:code [ fhir:v "Y" ] ;
fhir:display [ fhir:v "Tyrosine" ] ;
fhir:definition [ fhir:v "Y" ]
  ] [
fhir:code [ fhir:v "B" ] ;
fhir:display [ fhir:v "Aspartic acid or asparagine" ] ;
fhir:definition [ fhir:v "D or N" ]
  ] [
fhir:code [ fhir:v "U" ] ;
fhir:display [ fhir:v "Selenocysteine" ] ;
fhir:definition [ fhir:v "U" ]
  ] [
fhir:code [ fhir:v "X" ] ;
fhir:display [ fhir:v "Unknown or other amino acid" ] ;
fhir:definition [ fhir:v "Any amino acid" ]
  ] [
fhir:code [ fhir:v "Z" ] ;
fhir:display [ fhir:v "Glutamic acid or glutamine" ] ;
fhir:definition [ fhir:v "E or Q" ]
  ] [
fhir:code [ fhir:v "Ala" ] ;
fhir:display [ fhir:v "Alanine" ] ;
fhir:definition [ fhir:v "Ala" ]
  ] [
fhir:code [ fhir:v "Cys" ] ;
fhir:display [ fhir:v "Cysteine" ] ;
fhir:definition [ fhir:v "Cys" ]
  ] [
fhir:code [ fhir:v "Asp" ] ;
fhir:display [ fhir:v "Aspartic acid" ] ;
fhir:definition [ fhir:v "Asp" ]
  ] [
fhir:code [ fhir:v "Glu" ] ;
fhir:display [ fhir:v "Glutamic acid" ] ;
fhir:definition [ fhir:v "Glu" ]
  ] [
fhir:code [ fhir:v "Phe" ] ;
fhir:display [ fhir:v "Phenylalanine" ] ;
fhir:definition [ fhir:v "Phe" ]
  ] [
fhir:code [ fhir:v "Gly" ] ;
fhir:display [ fhir:v "Glycine" ] ;
fhir:definition [ fhir:v "Gly" ]
  ] [
fhir:code [ fhir:v "His" ] ;
fhir:display [ fhir:v "Histidine" ] ;
fhir:definition [ fhir:v "His" ]
  ] [
fhir:code [ fhir:v "Ile" ] ;
fhir:display [ fhir:v "Isoleucine" ] ;
fhir:definition [ fhir:v "Ile" ]
  ] [
fhir:code [ fhir:v "Lys" ] ;
fhir:display [ fhir:v "Lysine" ] ;
fhir:definition [ fhir:v "Lys" ]
  ] [
fhir:code [ fhir:v "Leu" ] ;
fhir:display [ fhir:v "Leucine" ] ;
fhir:definition [ fhir:v "Leu" ]
  ] [
fhir:code [ fhir:v "Met" ] ;
fhir:display [ fhir:v "Methionine" ] ;
fhir:definition [ fhir:v "Met" ]
  ] [
fhir:code [ fhir:v "Asn" ] ;
fhir:display [ fhir:v "Asparagine" ] ;
fhir:definition [ fhir:v "Asn" ]
  ] [
fhir:code [ fhir:v "Pro" ] ;
fhir:display [ fhir:v "Proline" ] ;
fhir:definition [ fhir:v "Pro" ]
  ] [
fhir:code [ fhir:v "Gln" ] ;
fhir:display [ fhir:v "Glutamine" ] ;
fhir:definition [ fhir:v "Gln" ]
  ] [
fhir:code [ fhir:v "Arg" ] ;
fhir:display [ fhir:v "Arginine" ] ;
fhir:definition [ fhir:v "Arg" ]
  ] [
fhir:code [ fhir:v "Ser" ] ;
fhir:display [ fhir:v "Serine" ] ;
fhir:definition [ fhir:v "Ser" ]
  ] [
fhir:code [ fhir:v "Thr" ] ;
fhir:display [ fhir:v "Threonine" ] ;
fhir:definition [ fhir:v "Thr" ]
  ] [
fhir:code [ fhir:v "Val" ] ;
fhir:display [ fhir:v "Valine" ] ;
fhir:definition [ fhir:v "Val" ]
  ] [
fhir:code [ fhir:v "Trp" ] ;
fhir:display [ fhir:v "Tryptophan" ] ;
fhir:definition [ fhir:v "Trp" ]
  ] [
fhir:code [ fhir:v "Tyr" ] ;
fhir:display [ fhir:v "Tyrosine" ] ;
fhir:definition [ fhir:v "Tyr" ]
  ] [
fhir:code [ fhir:v "Asx" ] ;
fhir:display [ fhir:v "Aspartic acid or asparagine" ] ;
fhir:definition [ fhir:v "Asp or Asn" ]
  ] [
fhir:code [ fhir:v "Sec" ] ;
fhir:display [ fhir:v "Selenocysteine" ] ;
fhir:definition [ fhir:v "Sec" ]
  ] [
fhir:code [ fhir:v "Xaa" ] ;
fhir:display [ fhir:v "Unknown or other amino acid" ] ;
fhir:definition [ fhir:v "Any amino acid" ]
  ] [
fhir:code [ fhir:v "Glx" ] ;
fhir:display [ fhir:v "Glutamic acid or glutamine" ] ;
fhir:definition [ fhir:v "Glu or Gln" ]
  ] ) . #