Validation Results for GenomicsReporting

Generated Fri Dec 19 22:20:44 UTC 2025, FHIR version 6.0.0-ballot3 for hl7.fhir.uv.genomics-reporting#4.0.0-cibuild (canonical = http://hl7.org/fhir/uv/genomics-reporting (history)). See Errors Only & IP

Quality Checks

Publisher Version:

IG Publisher Version: v2.0.29

Publication Code:

genomics-reporting . PackageId = hl7.fhir.uv.genomics-reporting, Canonical = http://hl7.org/fhir/uv/genomics-reporting

Realm Check for UV:

Language Info:

This IG has no language information

Publication Request:

package-id

hl7.fhir.uv.genomics-reporting

version

4.0.0-cibuild

path

http://hl7.org/fhir/uv/genomics-reporting/STU4-snapshot

Pub-Mode

working release

status

ballot

Release-Label

CI Build

Sequence (Group)

STU4 (current: 'STU3', others = 'STU 1','STU 2','STU 3')

desc

CI Build - STU 4.0.0 Development (FHIR R6)

descmd

CI Build - STU 4.0.0 Development (FHIR R6).

RelatedIgs

(None Found)

No Messages found - all good

Supressed Messages:

55 Suppressed Issues

Dependency Checks:

Package	Version	FHIR	Canonical	Web Base	Comment
hl7.fhir.uv.genomics-reporting	4.0.0-cibuild	R6	http://hl7.org/fhir/uv/genomics-reporting
hl7.terminology.r5	7.0.1 M	R5	http://terminology.hl7.org	http://terminology.hl7.org/7.0.1	FHIR Version Mismatch
hl7.fhir.uv.extensions.r5	5.2.0 M	R5	http://hl7.org/fhir/extensions	http://hl7.org/fhir/extensions/5.2.0	FHIR Version Mismatch
hl7.fhir.uv.extensions.r5	5.2.0 M	R5	http://hl7.org/fhir/extensions	http://hl7.org/fhir/extensions/5.2.0	FHIR Version Mismatch (as above)
hl7.fhir.uv.tools.r5	0.9.0 M	R5	http://hl7.org/fhir/tools	http://hl7.org/fhir/tools/0.9.0	Internal Dependency. FHIR Version Mismatch

Templates: hl7.fhir.template#1.0.0 -> hl7.base.template#1.0.0 -> fhir.base.template#1.0.0

Related IGs:

n/a

Dependent IGs:

no references

Global Profiles:

(none declared)

Terminology Server(s):

https://tx.fhir.org/r5 (details)

HTA Analysis:

All OK

R5 Dependencies:

(none)

Draft Dependencies:

hl7.fhir.r6.core#6.0.0-ballot3: GenomicStudyDataFormat (7 uses), GenomicStudyMethodType (5 uses), Practitioner (43 uses), PractitionerRole (30 uses), RelatedPerson (25 uses), Organization (44 uses), ObservationDefinition (24 uses), CarePlan (16 uses), DeviceRequest (13 uses), ImmunizationRecommendation (14 uses), MedicationRequest (14 uses), NutritionOrder (14 uses), ServiceRequest (15 uses), GenomicStudy (29 uses), ObservationCategoryCodes (37 uses), LOINCCodes (115 uses), Group (30 uses), Device (35 uses), Location (15 uses), Procedure (16 uses), Medication (15 uses), Substance (14 uses), BiologicallyDerivedProduct (14 uses), NutritionProduct (13 uses), Encounter (17 uses), CareTeam (21 uses), HealthcareService (15 uses), MolecularSequence (49 uses), SNOMEDCTBodyStructures (13 uses), BodyStructure (13 uses), ObservationMethods (9 uses), Specimen (14 uses), DeviceMetric (12 uses), ObservationReferenceRangeNormalValueCodes (12 uses), ObservationReferenceRangeMeaningCodes (12 uses), ObservationReferenceRangeAppliesToCodes (12 uses), QuestionnaireResponse (24 uses), DocumentReference (17 uses), ImagingStudy (15 uses), ImagingSelection (12 uses), Task (10 uses), ActivityDefinition (3 uses), TaskStatus (2 uses), TaskStatusReason (2 uses), TaskBusinessStatus (2 uses), TaskIntent (2 uses), RequestPriority (2 uses), ProcedurePerformerRoleCodes (2 uses), TaskPerformerFunctionCode (2 uses), TaskReason (2 uses), Coverage (2 uses), ClaimResponse (2 uses), Provenance (2 uses), TaskInputOutputParameterType (4 uses), Appointment (2 uses), AppointmentResponse (1 uses), Claim (1 uses), CommunicationRequest (1 uses), Contract (1 uses), CoverageEligibilityRequest (1 uses), EnrollmentRequest (1 uses), RequestOrchestration (1 uses), SupplyRequest (1 uses), VisionPrescription (1 uses), DocumentReferenceStatus (1 uses), CompositionStatus (1 uses), FHIRDocumentTypeCodes (1 uses), EpisodeOfCare (1 uses), CompositionAttestationMode (1 uses), SecurityLabelExamples (1 uses), DiagnosticReport (3 uses), DiagnosticReportStatus (1 uses), DiagnosticServiceSectionCodes (2 uses), LOINCDiagnosticReportCodes (1 uses), Citation (1 uses), FamilyMemberHistory (1 uses), AllergyIntolerance (1 uses), DeviceUsage (1 uses), Condition (3 uses), Composition (1 uses), SNOMEDCTClinicalFindings (1 uses), Communication (1 uses), RiskAssessment (2 uses), GenomicStudyStatus (1 uses), GenomicStudyType (1 uses), PlanDefinition (4 uses), GenomicStudyMethodType (1 uses), GenomicStudyChangeType (1 uses), GenomicStudyDataFormat (2 uses), MedicationKnowledge (2 uses), MedicationStatement (3 uses), MedicationAdministration (1 uses), MedicationDispense (1 uses), Immunization (1 uses), ResearchStudy (2 uses)
hl7.fhir.uv.extensions.r5#5.2.0: SDStatusDerivation (124 uses), SDTypeCharacteristics (9 uses)

Modifier Extensions:

(none)

Previous Version Comparison:

Comparison with version 3.0.0

IPA Comparison:

n/a

IPS Comparison:

n/a

Validation Flags:

On: autoLoad; Off: hintAboutNonMustSupport, anyExtensionsAllowed, checkAggregation, showReferenceMessages, noExperimentalContent, displayWarnings

Summary:

errors = 10, warn = 410, info = 14, broken links = 90, pinned = 0 (when multiples).

Filename	Errors	Warnings	Hints
Build Errors	93	1	10
/scratch/repo/fsh-generated/includes/fsh-link-references	0	0	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01	0	22	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-CYP2C19	0	74	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample	0	15	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-cgexample-withGrouping	0	15	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS	0	3	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-compound-heterozygote	0	1	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-diagnostic	0	2	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncology-report-example	0	46	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4	0	3	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping	0	3	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-pgxexample	0	12	0
/scratch/repo/fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19	0	2	0
/scratch/repo/fsh-generated/resources/CodeSystem-clinvar-evidence-level-custom-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-coded-annotation-types-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-knowledge-base-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-molecular-biomarker-ontology-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-pharmgkb-evidence-level-custom-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-sequence-phase-relationship-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-tbd-codes-cs	0	0	0
/scratch/repo/fsh-generated/resources/CodeSystem-variant-confidence-status-cs	0	0	0
/scratch/repo/fsh-generated/resources/ConceptMap-dna-change-type-map	0	7	1
/scratch/repo/fsh-generated/resources/Device-triodenovo-software	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-GenomicReportExample01	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-PGxGenomicReportEMERGE-withGrouping	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-diagnosticreport-hla-glstring-r4	0	0	0
/scratch/repo/fsh-generated/resources/DiagnosticReport-somaticReport	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-CNVAnalysis-called	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-FullGenome-GRCh38	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-SimpleVariantAnalysis-called	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-UncallableRegions	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-WES-FullSequencedRegion-GRCh38	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-WES-UncallableRegions-GRCh38	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileFatherBAM	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileMotherBAM	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileProbandBAM	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicFileProbandVCF	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicVCFfile-cnv	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-genomicVCFfile-simple	0	0	0
/scratch/repo/fsh-generated/resources/DocumentReference-somaticVCFfile	0	0	0
/scratch/repo/fsh-generated/resources/GenomicStudy-PGXGenomicStudy	0	0	0
/scratch/repo/fsh-generated/resources/GenomicStudy-genomicstudy-trio2	0	0	0
/scratch/repo/fsh-generated/resources/GenomicStudy-lungMass	0	4	0
/scratch/repo/fsh-generated/resources/GenomicStudy-somaticStudy	0	6	0
/scratch/repo/fsh-generated/resources/ImplementationGuide-genomics-reporting	1	1	0
/scratch/repo/fsh-generated/resources/MedicationStatement-MedicationStatementWarfarin	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-molc	0	3	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ATR-insertion-var	0	4	0
/scratch/repo/fsh-generated/resources/Observation-AnnotationExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-molc	0	1	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-therapuDrug1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-therapuDrug2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-EGFR-L858R-var	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineCNV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineDEL	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleGermlineINV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticCNV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticDEL	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ExampleSomaticINV	0	2	0
/scratch/repo/fsh-generated/resources/Observation-Genotype-Clinical-Trial-Example-using-haplotypes	0	1	0
/scratch/repo/fsh-generated/resources/Observation-GenotypeExample1	0	2	0
/scratch/repo/fsh-generated/resources/Observation-GenotypeExamplePharmVar	0	1	0
/scratch/repo/fsh-generated/resources/Observation-GrouperEx01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-GrouperEx02	0	0	0
/scratch/repo/fsh-generated/resources/Observation-GrouperEx03	0	0	0
/scratch/repo/fsh-generated/resources/Observation-HER2byImmuneStainExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HER2byImmunoassayExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype1	0	3	0
/scratch/repo/fsh-generated/resources/Observation-HLA-A-haplotype2	0	3	0
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype1	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HLA-B-haplotype2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype1	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HLA-C-haplotype2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar01	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeExamplePharmVar02	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-1of2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-2of2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-CMLExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-CMLImplication	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ISCN-NormalExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-disease	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-molc	0	1	0
/scratch/repo/fsh-generated/resources/Observation-MSH2-del-var	0	4	0
/scratch/repo/fsh-generated/resources/Observation-MSIExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MicrosatelliteInstabilityExample01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-MultipleRepeatExpansions	0	2	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-molc	0	2	0
/scratch/repo/fsh-generated/resources/Observation-NOTCH1-uncertain-var	0	3	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-disease	0	0	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-molc	0	1	0
/scratch/repo/fsh-generated/resources/Observation-NTHL1-snv-var	0	3	0
/scratch/repo/fsh-generated/resources/Observation-PDL1Example	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1001	0	2	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1002	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-geno-1003	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1011	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1012	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1013	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1014	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1015	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1016	0	4	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1017	0	4	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1018	0	4	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1019	0	3	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1020	0	4	0
/scratch/repo/fsh-generated/resources/Observation-Pgx-var-1021	0	4	0
/scratch/repo/fsh-generated/resources/Observation-PolyGenicDiagnosticImpExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-disease	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-therapuDrug	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ROS1-Fusion-var	0	1	0
/scratch/repo/fsh-generated/resources/Observation-RepeatExpansion	0	3	0
/scratch/repo/fsh-generated/resources/Observation-SNVexample	0	2	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-molc	0	2	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-STAG2-insertion-var	0	4	0
/scratch/repo/fsh-generated/resources/Observation-SequencePhaseRelationExample1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TMB-therapuDrug	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TMBExample	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-2	0	1	0
/scratch/repo/fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-Somatic	0	1	0
/scratch/repo/fsh-generated/resources/Observation-TherapeuticImplicationExample1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TumorMutationBurdenExample01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp01	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp02	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp03	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp04	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp05	0	0	0
/scratch/repo/fsh-generated/resources/Observation-TxImp06	0	0	0
/scratch/repo/fsh-generated/resources/Observation-Variant-Somatic-Clinical-Trial	0	1	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample	0	1	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample1	0	0	0
/scratch/repo/fsh-generated/resources/Observation-VariantExample2	0	1	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-significance	0	0	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-uncertain-molc	0	2	0
/scratch/repo/fsh-generated/resources/Observation-ZFHX3-uncertain-var	0	3	0
/scratch/repo/fsh-generated/resources/Observation-diagnosticImplication-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-genotype-hla-a-glstring-r4	0	3	0
/scratch/repo/fsh-generated/resources/Observation-haplotype-hla-a-1-r4	0	2	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq1	0	4	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq2	0	2	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq3	0	2	0
/scratch/repo/fsh-generated/resources/Observation-molec-conseq4	0	2	0
/scratch/repo/fsh-generated/resources/Observation-obs-idh-ex	0	3	0
/scratch/repo/fsh-generated/resources/Observation-obs1-interact-smn1-smn2	0	3	0
/scratch/repo/fsh-generated/resources/Observation-obs2-interact-smn1-smn2	0	3	0
/scratch/repo/fsh-generated/resources/Observation-pop-allele-freq	0	0	0
/scratch/repo/fsh-generated/resources/Observation-therapuDrug1-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-therapuDrug2-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-therapuDrug3-interact-smn1-smn2	0	0	0
/scratch/repo/fsh-generated/resources/Observation-variant-with-molec-consequences	0	1	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-dx-implications	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-molecular-consequences	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-specific-haplotypes	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-specific-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-structural-intersecting-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-structural-subsuming-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-population-tx-implications	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-study-metadata	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-dx-implications	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-haplotypes	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-molecular-consequences	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-specific-haplotypes	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-specific-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-structural-intersecting-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-structural-subsuming-variants	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-tx-implications	0	0	0
/scratch/repo/fsh-generated/resources/OperationDefinition-find-subject-variants	0	0	0
/scratch/repo/fsh-generated/resources/Organization-ExampleLab	0	0	0
/scratch/repo/fsh-generated/resources/Organization-ExampleOrg	0	0	0
/scratch/repo/fsh-generated/resources/Organization-performingOrganization	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindALLPopulationSpecificVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindANYPopulationSpecificVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationDxImplicationsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationMolecConseqOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationSpecificHaplotypesOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationStructuralIntersectingVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationStructuralSubsumingVariantsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindPopulationTxImplicationsOutput	0	0	0
/scratch/repo/fsh-generated/resources/Parameters-FindStudyMetadataOutput	0	4	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput	0	6	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput	0	11	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput	0	3	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectSpecificVariantsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralIntersectingVariantsOutput	0	2	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectStructuralSubsumingVariantsOutput	0	2	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectTxImplicationsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Parameters-FindSubjectVariantsOutput	0	1	0
/scratch/repo/fsh-generated/resources/Patient-CGPatientExample01	0	0	0
/scratch/repo/fsh-generated/resources/Patient-ExamplePatient	0	0	0
/scratch/repo/fsh-generated/resources/Patient-HG00403	0	0	0
/scratch/repo/fsh-generated/resources/Patient-denovoChild	0	0	0
/scratch/repo/fsh-generated/resources/Patient-denovoFather	0	0	0
/scratch/repo/fsh-generated/resources/Patient-denovoMother	0	0	0
/scratch/repo/fsh-generated/resources/Patient-genomicPatient	0	0	0
/scratch/repo/fsh-generated/resources/Patient-somaticPatient	0	0	0
/scratch/repo/fsh-generated/resources/Practitioner-orderingPractitioner	0	0	0
/scratch/repo/fsh-generated/resources/Practitioner-pathologistPractitioner	0	0	0
/scratch/repo/fsh-generated/resources/Practitioner-practitioner02	0	0	0
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n/a Show Validation Information

ImplementationGuide/genomics-reporting

error

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ImplementationGuide/genomics-reporting

error

This IG is version 6.0.0-ballot3, while the IG 'hl7.fhir.uv.extensions.r5' is from version 5.0.0

ImplementationGuide/genomics-reporting

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This IG is version 6.0.0-ballot3, while the IG 'hl7.fhir.uv.tools.r5' is from version 5.0.0

warning

The jira specification file appears to be out of date with the versions, artifacts and pages currently defined in the IG. A proposed revised file to be reviewed and, if appropriate, submitted as a pull request against the XML folder in https://github.com/HL7/JIRA-Spec-Artifacts. To see the differences, perform a file compare on 'template/jira-current.xml' (a normalized view of what is in Github) and 'template/jira-new.xml' (reflects current IG content)

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StructureDefinition-genotype.html

information

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StructureDefinition-haplotype.html

information

The html source contains the word 'SHOULD' but it is not in a text phrase marked as a conformance clause CONFORMANCE_STATEMENT_WORD

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StructureDefinition-implication.html

information

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StructureDefinition-therapeutic-implication.html

information

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information

The html source contains the word 'SHALL' but it is not in a text phrase marked as a conformance clause CONFORMANCE_STATEMENT_WORD

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information

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pharmacogenomics.html

information

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sequencing.html

information

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Bundle.entry[6].resource/*Observation/dv-5c7e9e1ca65ac*/.component[1].value.ofType(CodeableConcept).coding[0].system (l1186/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[7].resource/*Observation/dv-5c7e9e1ca6627*/.component[1].value.ofType(CodeableConcept).coding[0].system (l1368/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[8].resource/*Observation/dv-5c7e9e1ca66a1*/.component[1].value.ofType(CodeableConcept).coding[0].system (l1550/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[9].resource/*Observation/dv-5c7e9e1ca671c*/.component[1].value.ofType(CodeableConcept).coding[0].system (l1732/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[10].resource/*Observation/dv-5c7e9e1ca6797*/.component[1].value.ofType(CodeableConcept).coding[0].system (l1914/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[11].resource/*Observation/dv-5c7e9e1ca6812*/.component[1].value.ofType(CodeableConcept).coding[0].system (l2096/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[12].resource/*Observation/dv-5c7e9e1ca688c*/.component[1].value.ofType(CodeableConcept).coding[0].system (l2278/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[13].resource/*Observation/dv-5c7e9e1ca6922*/.component[1].value.ofType(CodeableConcept).coding[0].system (l2460/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[14].resource/*Observation/dv-5c7e9e1ca69a3*/.component[1].value.ofType(CodeableConcept).coding[0].system (l2642/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[15].resource/*Observation/dv-5c7e9e1ca6a1d*/.component[1].value.ofType(CodeableConcept).coding[0].system (l2824/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[16].resource/*Observation/dv-5c7e9e1ca6a97*/.component[1].value.ofType(CodeableConcept).coding[0].system (l3006/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[17].resource/*Observation/dv-5c7e9e1ca6b11*/.component[1].value.ofType(CodeableConcept).coding[0].system (l3188/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[18].resource/*Observation/dv-5c7e9e1ca6b86*/.component[1].value.ofType(CodeableConcept).coding[0].system (l3370/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[19].resource/*Observation/dv-5c7e9e1ca6c31*/.component[1].value.ofType(CodeableConcept).coding[0].system (l3552/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[20].resource/*Observation/dv-5c7e9e1ca6ccc*/.component[1].value.ofType(CodeableConcept).coding[0].system (l3734/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[21].resource/*Observation/dv-5c7e9e1ca6d4b*/.component[1].value.ofType(CodeableConcept).coding[0].system (l3916/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[22].resource/*Observation/dv-5c7e9e1ca6de3*/.component[1].value.ofType(CodeableConcept).coding[0].system (l4098/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[23].resource/*Observation/dv-5c7e9e1ca6e86*/.component[1].value.ofType(CodeableConcept).coding[0].system (l4280/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[24].resource/*Observation/dv-5c7e9e1ca6f11*/.component[1].value.ofType(CodeableConcept).coding[0].system (l4462/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[25].resource/*Observation/dv-5c7e9e1ca6fa5*/.component[1].value.ofType(CodeableConcept).coding[0].system (l4644/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[26].resource/*Observation/dv-5c7e9e1ca7025*/.component[1].value.ofType(CodeableConcept).coding[0].system (l4826/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[27].resource/*Observation/dv-5c7e9e1ca70a2*/.component[1].value.ofType(CodeableConcept).coding[0].system (l5008/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[28].resource/*Observation/dv-5c7e9e1ca7141*/.component[1].value.ofType(CodeableConcept).coding[0].system (l5190/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[29].resource/*Observation/dv-5c7e9e1ca71bf*/.component[1].value.ofType(CodeableConcept).coding[0].system (l5372/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[30].resource/*Observation/dv-5c7e9e1ca724a*/.component[1].value.ofType(CodeableConcept).coding[0].system (l5554/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[31].resource/*Observation/dv-5c7e9e1ca72e4*/.component[1].value.ofType(CodeableConcept).coding[0].system (l5736/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[32].resource/*Observation/dv-5c7e9e1ca7377*/.component[1].value.ofType(CodeableConcept).coding[0].system (l5918/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[33].resource/*Observation/dv-5c7e9e1ca740a*/.component[1].value.ofType(CodeableConcept).coding[0].system (l6100/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[34].resource/*Observation/dv-5c7e9e1ca7497*/.component[1].value.ofType(CodeableConcept).coding[0].system (l6282/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[35].resource/*Observation/dv-5c7e9e1ca7513*/.component[1].value.ofType(CodeableConcept).coding[0].system (l6464/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[36].resource/*Observation/dv-5c7e9e1ca758e*/.component[1].value.ofType(CodeableConcept).coding[0].system (l6646/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[37].resource/*Observation/dv-5c7e9e1ca7609*/.component[1].value.ofType(CodeableConcept).coding[0].system (l6828/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[38].resource/*Observation/dv-5c7e9e1ca7684*/.component[1].value.ofType(CodeableConcept).coding[0].system (l7010/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[39].resource/*Observation/dv-5c7e9e1ca76ff*/.component[1].value.ofType(CodeableConcept).coding[0].system (l7192/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[40].resource/*Observation/dv-5c7e9e1ca7779*/.component[1].value.ofType(CodeableConcept).coding[0].system (l7374/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[41].resource/*Observation/dv-5c7e9e1ca77f4*/.component[1].value.ofType(CodeableConcept).coding[0].system (l7556/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[42].resource/*Observation/dv-5c7e9e1ca786f*/.component[1].value.ofType(CodeableConcept).coding[0].system (l7738/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[43].resource/*Observation/dv-5c7e9e1ca78eb*/.component[1].value.ofType(CodeableConcept).coding[0].system (l7920/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[44].resource/*Observation/dv-5c7e9e1ca7967*/.component[1].value.ofType(CodeableConcept).coding[0].system (l8102/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[45].resource/*Observation/dv-5c7e9e1ca79ef*/.component[1].value.ofType(CodeableConcept).coding[0].system (l8284/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[46].resource/*Observation/dv-5c7e9e1ca7a79*/.component[1].value.ofType(CodeableConcept).coding[0].system (l8466/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[47].resource/*Observation/dv-5c7e9e1ca7afb*/.component[1].value.ofType(CodeableConcept).coding[0].system (l8648/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[48].resource/*Observation/dv-5c7e9e1ca7bcb*/.component[1].value.ofType(CodeableConcept).coding[0].system (l8830/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[49].resource/*Observation/dv-5c7e9e1ca7c49*/.component[1].value.ofType(CodeableConcept).coding[0].system (l9012/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[50].resource/*Observation/dv-5c7e9e1ca7cd3*/.component[1].value.ofType(CodeableConcept).coding[0].system (l9194/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[51].resource/*Observation/dv-5c7e9e1ca7d94*/.component[1].value.ofType(CodeableConcept).coding[0].system (l9376/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[52].resource/*Observation/dv-5c7e9e1ca7e45*/.component[1].value.ofType(CodeableConcept).coding[0].system (l9558/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[53].resource/*Observation/dv-5c7e9e1ca7ed6*/.component[1].value.ofType(CodeableConcept).coding[0].system (l9740/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[54].resource/*Observation/dv-5c7e9e1ca7f69*/.component[1].value.ofType(CodeableConcept).coding[0].system (l9922/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[55].resource/*Observation/dv-5c7e9e1ca7ffd*/.component[1].value.ofType(CodeableConcept).coding[0].system (l10104/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[56].resource/*Observation/dv-5c7e9e1ca8085*/.component[1].value.ofType(CodeableConcept).coding[0].system (l10286/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[57].resource/*Observation/dv-5c7e9e1ca811f*/.component[1].value.ofType(CodeableConcept).coding[0].system (l10468/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[58].resource/*Observation/dv-5c7e9e1ca81b9*/.component[1].value.ofType(CodeableConcept).coding[0].system (l10650/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[59].resource/*Observation/dv-5c7e9e1ca8252*/.component[1].value.ofType(CodeableConcept).coding[0].system (l10832/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[60].resource/*Observation/dv-5c7e9e1ca82e4*/.component[1].value.ofType(CodeableConcept).coding[0].system (l11014/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[61].resource/*Observation/dv-5c7e9e1ca837c*/.component[1].value.ofType(CodeableConcept).coding[0].system (l11196/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[62].resource/*Observation/dv-5c7e9e1ca8410*/.component[1].value.ofType(CodeableConcept).coding[0].system (l11378/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[63].resource/*Observation/dv-5c7e9e1ca8493*/.component[1].value.ofType(CodeableConcept).coding[0].system (l11560/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[64].resource/*Observation/dv-5c7e9e1ca8514*/.component[1].value.ofType(CodeableConcept).coding[0].system (l11742/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[65].resource/*Observation/dv-5c7e9e1ca8596*/.component[1].value.ofType(CodeableConcept).coding[0].system (l11924/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[66].resource/*Observation/dv-5c7e9e1ca8618*/.component[1].value.ofType(CodeableConcept).coding[0].system (l12106/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[67].resource/*Observation/dv-5c7e9e1ca869c*/.component[1].value.ofType(CodeableConcept).coding[0].system (l12288/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[68].resource/*Observation/dv-5c7e9e1ca871e*/.component[1].value.ofType(CodeableConcept).coding[0].system (l12470/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[69].resource/*Observation/dv-5c7e9e1ca879f*/.component[1].value.ofType(CodeableConcept).coding[0].system (l12652/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[70].resource/*Observation/dv-5c7e9e1ca8820*/.component[1].value.ofType(CodeableConcept).coding[0].system (l12834/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[71].resource/*Observation/dv-5c7e9e1ca88a5*/.component[1].value.ofType(CodeableConcept).coding[0].system (l13016/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[72].resource/*Observation/dv-5c7e9e1ca8927*/.component[1].value.ofType(CodeableConcept).coding[0].system (l13198/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[73].resource/*Observation/dv-5c7e9e1ca89a8*/.component[1].value.ofType(CodeableConcept).coding[0].system (l13380/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

fsh-generated/resources/Bundle-bundle-cgexample.json Show Validation Information (95)

Path

Severity

Message

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[0].value.ofType(CodeableConcept).coding[0].system (l238/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[1].value.ofType(CodeableConcept).coding[0] (l257/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[2].value.ofType(CodeableConcept).coding[0] (l276/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[3].value.ofType(CodeableConcept).coding[0] (l294/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[5].resource/*Observation/discrete-variant*/.component[5].value.ofType(CodeableConcept).coding[0].system (l330/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' version '137' could not be found, so the code cannot be validated. No versions of this code system are known (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM_VERSION_NONE

Bundle.entry[6].resource/*Observation/dis-path*/.component[1].value.ofType(CodeableConcept).coding[0].system (l679/c14)

warning

A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[9].resource/*Observation/complex-component-D*/.component[0].value.ofType(CodeableConcept).coding[0] (l926/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

Bundle.entry[9].resource/*Observation/complex-component-D*/.component[1].value.ofType(CodeableConcept).coding[0] (l945/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[10].resource/*Observation/complex-component-E*/.component[0].value.ofType(CodeableConcept).coding[0].system (l1083/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' version '???' could not be found, so the code cannot be validated. No versions of this code system are known (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM_VERSION_NONE

Bundle.entry[10].resource/*Observation/complex-component-E*/.component[1].value.ofType(CodeableConcept).coding[0] (l1103/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[11].resource/*Observation/haplotype*/.value.ofType(CodeableConcept).coding[0].system (l1180/c10)

warning

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[12].resource/*Observation/genotype*/.value.ofType(CodeableConcept).coding[0].system (l1245/c10)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[12].resource/*Observation/genotype*/.value.ofType(CodeableConcept).coding[1] (l1245/c10)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Bundle.entry[12].resource/*Observation/genotype*/.component[0].value.ofType(CodeableConcept).coding[0] (l1278/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[12].resource/*Observation/genotype*/.component[1].value.ofType(CodeableConcept).coding[0] (l1297/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.json Show Validation Information (106)

Path

Severity

Message

Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[0].value.ofType(CodeableConcept).coding[0].system (l242/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[1].value.ofType(CodeableConcept).coding[0] (l261/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[2].value.ofType(CodeableConcept).coding[0] (l280/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[3].value.ofType(CodeableConcept).coding[0] (l298/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[5].resource/*Observation/discrete-variant-1a*/.component[5].value.ofType(CodeableConcept).coding[0].system (l334/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[6].resource/*Observation/dis-path-1a*/.component[1].value.ofType(CodeableConcept).coding[0].system (l654/c14)

warning

A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[9].resource/*Observation/complex-component-D-1a*/.component[0].value.ofType(CodeableConcept).coding[0] (l901/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

Bundle.entry[9].resource/*Observation/complex-component-D-1a*/.component[1].value.ofType(CodeableConcept).coding[0] (l920/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[10].resource/*Observation/complex-component-E-1a*/.component[0].value.ofType(CodeableConcept).coding[0] (l1058/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

Bundle.entry[10].resource/*Observation/complex-component-E-1a*/.component[1].value.ofType(CodeableConcept).coding[0] (l1077/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[12].resource/*Observation/haplotype-1a*/.value.ofType(CodeableConcept).coding[0].system (l1221/c10)

warning

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[13].resource/*Observation/genotype-1a*/.value.ofType(CodeableConcept).coding[0].system (l1286/c10)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[13].resource/*Observation/genotype-1a*/.value.ofType(CodeableConcept).coding[1] (l1286/c10)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Bundle.entry[13].resource/*Observation/genotype-1a*/.component[0].value.ofType(CodeableConcept).coding[0] (l1319/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[13].resource/*Observation/genotype-1a*/.component[1].value.ofType(CodeableConcept).coding[0] (l1338/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-complexVariant-nonHGVS.json Show Validation Information (9)

Path

Severity

Message

Bundle.entry[0].resource/*Observation/Inline-Instance-for-complexVariant-nonHGVS-1*/.component[0].value.ofType(CodeableConcept).coding[0] (l74/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[1].resource/*Observation/Inline-Instance-for-complexVariant-nonHGVS-2*/.component[0].value.ofType(CodeableConcept).coding[0] (l221/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[2].resource/*Observation/Inline-Instance-for-complexVariant-nonHGVS-3*/.value.ofType(CodeableConcept).coding[0] (l347/c10)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-compound-heterozygote.json Show Validation Information (9)

Path

Severity

Message

Bundle.entry[2].resource/*Observation/Inline-Instance-for-compound-heterozygote-3*/.value.ofType(CodeableConcept).coding[0] (l263/c10)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-diagnostic.json Show Validation Information (28)

Path

Severity

Message

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-diagnostic-5*/.component[2].value.ofType(CodeableConcept).coding[0] (l304/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-diagnostic-5*/.component[4].value.ofType(CodeableConcept).coding[0] (l344/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json Show Validation Information (126)

Path

Severity

Message

Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[1].value.ofType(CodeableConcept).coding[0] (l190/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[4].value.ofType(CodeableConcept).coding[0].system (l250/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[6].value.ofType(CodeableConcept).coding[0] (l290/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[3].resource/*Observation/Inline-Instance-for-oncology-report-example-4*/.component[4].value.ofType(CodeableConcept).coding[0] (l250/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[1].value.ofType(CodeableConcept).coding[0] (l455/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[4].value.ofType(CodeableConcept).coding[0].system (l515/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[5].value.ofType(CodeableConcept).coding[0] (l535/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[4].resource/*Observation/Inline-Instance-for-oncology-report-example-5*/.component[4].value.ofType(CodeableConcept).coding[0] (l515/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[1].value.ofType(CodeableConcept).coding[0] (l700/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[4].value.ofType(CodeableConcept).coding[0].system (l760/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[6].value.ofType(CodeableConcept).coding[0] (l800/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncology-report-example-6*/.component[4].value.ofType(CodeableConcept).coding[0] (l760/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[1].value.ofType(CodeableConcept).coding[0] (l965/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[4].value.ofType(CodeableConcept).coding[0] (l1025/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncology-report-example-7*/.component[5].value.ofType(CodeableConcept).coding[0] (l1045/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[1].value.ofType(CodeableConcept).coding[0] (l1210/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[4].value.ofType(CodeableConcept).coding[0].system (l1270/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[5].value.ofType(CodeableConcept).coding[0] (l1290/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncology-report-example-8*/.component[4].value.ofType(CodeableConcept).coding[0] (l1270/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[1].value.ofType(CodeableConcept).coding[0] (l1455/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[4].value.ofType(CodeableConcept).coding[0].system (l1515/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[5].value.ofType(CodeableConcept).coding[0] (l1535/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncology-report-example-9*/.component[4].value.ofType(CodeableConcept).coding[0] (l1515/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[1].value.ofType(CodeableConcept).coding[0] (l1700/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[4].value.ofType(CodeableConcept).coding[0] (l1759/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[9].resource/*Observation/Inline-Instance-for-oncology-report-example-10*/.component[6].value.ofType(CodeableConcept).coding[0] (l1798/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[1].value.ofType(CodeableConcept).coding[0] (l1963/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[4].value.ofType(CodeableConcept).coding[0].system (l2022/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[6].value.ofType(CodeableConcept).coding[0] (l2061/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[10].resource/*Observation/Inline-Instance-for-oncology-report-example-11*/.component[4].value.ofType(CodeableConcept).coding[0] (l2022/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[1].value.ofType(CodeableConcept).coding[0] (l2226/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[4].value.ofType(CodeableConcept).coding[0].system (l2285/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[6].value.ofType(CodeableConcept).coding[0] (l2324/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[11].resource/*Observation/Inline-Instance-for-oncology-report-example-12*/.component[4].value.ofType(CodeableConcept).coding[0] (l2285/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[1].value.ofType(CodeableConcept).coding[0] (l2489/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[4].value.ofType(CodeableConcept).coding[0].system (l2548/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[5].value.ofType(CodeableConcept).coding[0] (l2568/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncology-report-example-13*/.component[4].value.ofType(CodeableConcept).coding[0] (l2548/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[1].value.ofType(CodeableConcept).coding[0] (l2733/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[4].value.ofType(CodeableConcept).coding[0].system (l2792/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[5].value.ofType(CodeableConcept).coding[0] (l2812/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[13].resource/*Observation/Inline-Instance-for-oncology-report-example-14*/.component[4].value.ofType(CodeableConcept).coding[0] (l2792/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[1].value.ofType(CodeableConcept).coding[0] (l2977/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[4].value.ofType(CodeableConcept).coding[0].system (l3036/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[6].value.ofType(CodeableConcept).coding[0] (l3075/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[14].resource/*Observation/Inline-Instance-for-oncology-report-example-15*/.component[4].value.ofType(CodeableConcept).coding[0] (l3036/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncologyexamples-r4.json Show Validation Information (99)

Path

Severity

Message

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-6*/.component[3].value.ofType(CodeableConcept).coding[0] (l418/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-7*/.component[3].value.ofType(CodeableConcept).coding[0] (l574/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-8*/.component[2].value.ofType(CodeableConcept).coding[0] (l710/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncologyexamples-r4-withGrouping.json Show Validation Information (115)

Path

Severity

Message

Bundle.entry[5].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-6*/.component[3].value.ofType(CodeableConcept).coding[0] (l418/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[6].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-7*/.component[3].value.ofType(CodeableConcept).coding[0] (l574/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[7].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-8*/.component[2].value.ofType(CodeableConcept).coding[0] (l710/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-pgxexample.json Show Validation Information (72)

Path

Severity

Message

Bundle.entry[6].resource/*Observation/genotype-pgx-example*/.value.ofType(CodeableConcept).coding[0] (l307/c10)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Bundle.entry[6].resource/*Observation/genotype-pgx-example*/.value.ofType(CodeableConcept).coding[1] (l307/c10)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Bundle.entry[6].resource/*Observation/genotype-pgx-example*/.component[0].value.ofType(CodeableConcept).coding[0] (l344/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[7].resource/*Observation/haplotype-1-pgx-example*/.value.ofType(CodeableConcept).coding[0] (l409/c10)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Bundle.entry[7].resource/*Observation/haplotype-1-pgx-example*/.component[0].value.ofType(CodeableConcept).coding[0] (l437/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[8].resource/*Observation/haplotype-2-pgx-example*/.value.ofType(CodeableConcept).coding[0] (l502/c10)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Bundle.entry[8].resource/*Observation/haplotype-2-pgx-example*/.component[0].value.ofType(CodeableConcept).coding[0] (l530/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[9].resource/*Observation/variant-1-pgx-example*/.component[0].value.ofType(CodeableConcept).coding[0] (l618/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[9].resource/*Observation/variant-1-pgx-example*/.component[1].value.ofType(CodeableConcept).coding[0] (l637/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated

Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[0].value.ofType(CodeableConcept).coding[0] (l766/c14)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[1].value.ofType(CodeableConcept).coding[0] (l786/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Bundle.entry[10].resource/*Observation/variant-2-pgx-example*/.component[2].value.ofType(CodeableConcept).coding[0] (l804/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19.json Show Validation Information (35)

Path

Severity

Message

Bundle.entry[0].resource/*Observation/dv-5c7e9e1ca8252*/.component[1].value.ofType(CodeableConcept).coding[0].system (l94/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Bundle.entry[1].resource/*Observation/dv-5c7e9e1ca82e4*/.component[1].value.ofType(CodeableConcept).coding[0].system (l276/c14)

warning

Message

ConceptMap (l1/c4910)

information

The resource status 'draft' and the standards status 'trial-use' may not be consistent and should be reviewed VALIDATION_VAL_STATUS_INCONSISTENT_HINT

ConceptMap.group[0].element[0].target[0].code (l1/c4076)

warning

The code 'SO:0002073' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null'

ConceptMap.group[0].element[1].target[0].code (l1/c4213)

warning

The code 'SO:0000159' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null'

ConceptMap.group[0].element[2].target[0].code (l1/c4339)

warning

The code 'SO:1000035' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null'

ConceptMap.group[0].element[3].target[0].code (l1/c4466)

warning

The code 'SO:0000667' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null'

ConceptMap.group[0].element[4].target[0].code (l1/c4600)

warning

The code 'SO:1000032' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null'

ConceptMap.group[0].element[5].target[0].code (l1/c4722)

warning

The code 'SO:1000036' comes from the system http://www.sequenceontology.org which could not be found, so it's not known whether it's valid in the value set 'null'

ConceptMap.group[0].element[6].target[0].code (l1/c4850)

warning

Path

Severity

Message

GenomicStudy.analysis[0].changeType[0].coding[0] (l61/c10)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

GenomicStudy.analysis[0].changeType[1].coding[0] (l70/c10)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

GenomicStudy.analysis[0].changeType[2].coding[0] (l79/c10)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

GenomicStudy.analysis[1].changeType[0].coding[0] (l178/c10)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/GenomicStudy-somaticStudy.json Show Validation Information (1)

Path

Severity

Message

GenomicStudy.analysis[0].changeType[0].coding[0] (l65/c10)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

GenomicStudy.analysis[0].changeType[1].coding[0] (l74/c10)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

GenomicStudy.analysis[0].changeType[2].coding[0] (l83/c10)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

GenomicStudy.analysis[0].changeType[3].coding[0] (l92/c10)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

GenomicStudy.analysis[1].changeType[0].coding[0] (l165/c10)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

GenomicStudy.analysis[1].changeType[1].coding[0] (l174/c10)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/ImplementationGuide-genomics-reporting.json Show Validation Information (1)

Path

Severity

Message

ImplementationGuide.dependsOn[0] (l1/c2113)

warning

The ImplementationGuide is based on FHIR version 6.0.0-ballot3 but package hl7.terminology.r5#7.0.1 is based on FHIR version 5.0.0. In general, this version mismatch should be avoided - some tools will try to make this work with variable degrees of success, but others will not even try IG_DEPENDENCY_VERSION_WARNING

ImplementationGuide.dependsOn[1] (l1/c2475)

error

The canonical URL http://hl7.org/fhir/extensions/ImplementationGuide/hl7.fhir.uv.extensions points to the package hl7.fhir.uv.extensions which is inconsistent with the stated packageId of hl7.fhir.uv.extensions.r5 IG_DEPENDENCY_CLASH_PACKAGEID

fsh-generated/resources/MedicationStatement-MedicationStatementWarfarin.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-ATR-insertion-molc.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l81/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[2].value.ofType(CodeableConcept).coding[0] (l100/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[3].value.ofType(CodeableConcept).coding[0] (l119/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-ATR-insertion-significance.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-ATR-insertion-var.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[2].value.ofType(CodeableConcept).coding[0] (l79/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[4].value.ofType(CodeableConcept).coding[0] (l116/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0] (l183/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-AnnotationExample.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-EGFR-L858R-molc.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l80/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-EGFR-L858R-significance.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-EGFR-L858R-therapuDrug1.json Show Validation Information (9)

fsh-generated/resources/Observation-GenotypeExample1.json Show Validation Information (9)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l44/c4)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l64/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-GenotypeExamplePharmVar.json Show Validation Information (1)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-GrouperEx01.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-GrouperEx02.json Show Validation Information (9)

Observation.value.ofType(CodeableConcept).coding[0] (l68/c4)

warning

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l46/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0].system (l46/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

fsh-generated/resources/Observation-HLA-A-haplotype2.json Show Validation Information (9)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l68/c4)

warning

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l46/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0].system (l46/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

fsh-generated/resources/Observation-HLA-B-haplotype1.json Show Validation Information (9)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l68/c4)

warning

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l46/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-HLA-B-haplotype2.json Show Validation Information (9)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l68/c4)

warning

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l46/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-HLA-C-haplotype1.json Show Validation Information (9)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l68/c4)

warning

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l46/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-HLA-C-haplotype2.json Show Validation Information (9)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l68/c4)

warning

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l46/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-HaplotypeExamplePharmVar01.json Show Validation Information (3)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l65/c4)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-HaplotypeExamplePharmVar02.json Show Validation Information (3)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l65/c4)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-1of2.json Show Validation Information (4)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l65/c4)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-HaplotypeSet-Clinical-Trial-Example-2of2.json Show Validation Information (4)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l65/c4)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l63/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[2].value.ofType(CodeableConcept).coding[0] (l82/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[3].value.ofType(CodeableConcept).coding[0] (l101/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-MSIExample.json Show Validation Information (9)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-NTHL1-snv-disease.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-NTHL1-snv-molc.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l80/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-NTHL1-snv-var.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l63/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[3].value.ofType(CodeableConcept).coding[0] (l100/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[4].value.ofType(CodeableConcept).coding[0] (l119/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-PDL1Example.json Show Validation Information (9)

Path

Severity

Message

Observation.component[2].value.ofType(CodeableConcept).coding[0] (l83/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-Pgx-geno-1001.json Show Validation Information (9)

Path

Severity

Message

Observation.value.ofType(CodeableConcept).coding[0] (l56/c4)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-Pgx-geno-1002.json Show Validation Information (9)

Path

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[7].value.ofType(CodeableConcept).coding[0] (l161/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0] (l180/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0].system (l180/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

fsh-generated/resources/Observation-Pgx-var-1017.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[7].value.ofType(CodeableConcept).coding[0] (l161/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0] (l180/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0].system (l180/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

fsh-generated/resources/Observation-Pgx-var-1018.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[7].value.ofType(CodeableConcept).coding[0] (l161/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0] (l180/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0].system (l180/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

fsh-generated/resources/Observation-Pgx-var-1019.json Show Validation Information (9)

Path

Severity

Message

Observation.component[3].value.ofType(CodeableConcept).coding[0] (l101/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[4].value.ofType(CodeableConcept).coding[0] (l120/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[4].value.ofType(CodeableConcept).coding[0].system (l120/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

fsh-generated/resources/Observation-Pgx-var-1020.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[7].value.ofType(CodeableConcept).coding[0] (l161/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0] (l180/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0].system (l180/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

fsh-generated/resources/Observation-Pgx-var-1021.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[7].value.ofType(CodeableConcept).coding[0] (l161/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0] (l180/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[8].value.ofType(CodeableConcept).coding[0].system (l180/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

fsh-generated/resources/Observation-PolyGenicDiagnosticImpExample.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-ROS1-Fusion.json Show Validation Information (9)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l60/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-ROS1-Fusion-disease.json Show Validation Information (9)

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l47/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[2].value.ofType(CodeableConcept).coding[0] (l81/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[5].value.ofType(CodeableConcept).coding[0] (l137/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-SNVexample.json Show Validation Information (5)

Path

Severity

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l81/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[6].value.ofType(CodeableConcept).coding[0] (l194/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-STAG2-insertion-molc.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l81/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[2].value.ofType(CodeableConcept).coding[0] (l100/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-STAG2-insertion-significance.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-STAG2-insertion-var.json Show Validation Information (9)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l63/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[3].value.ofType(CodeableConcept).coding[0] (l97/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[5].value.ofType(CodeableConcept).coding[0] (l134/c8)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Observation.component[9].value.ofType(CodeableConcept).coding[0] (l201/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-SequencePhaseRelationExample1.json Show Validation Information (1)

✓

fsh-generated/resources/Observation-TMB-therapuDrug.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-TMBExample.json Show Validation Information (9)

✓

fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-2.json Show Validation Information (1)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l78/c8)

warning

A definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-Therapeutic-Implication-Clinical-Trial-Somatic.json Show Validation Information (1)

Path

Severity

Message

Observation.component[2].value.ofType(CodeableConcept).coding[0] (l94/c8)

warning

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l45/c8)

warning

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-ZFHX3-uncertain-var.json Show Validation Information (9)

Path

Severity

Message

Message

Observation.component[0].value.ofType(CodeableConcept).coding[0] (l72/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l91/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[1].value.ofType(CodeableConcept).coding[1] (l91/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Observation.component[2].value.ofType(CodeableConcept).coding[0] (l115/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-molec-conseq2.json Show Validation Information (1)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l92/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[2].value.ofType(CodeableConcept).coding[0] (l111/c8)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-molec-conseq3.json Show Validation Information (1)

Path

Severity

Message

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l92/c8)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Observation.component[2].value.ofType(CodeableConcept).coding[0] (l111/c8)

Message

Observation.component[1].value.ofType(CodeableConcept).coding[0] (l86/c8)

warning

Message

Parameters.parameter[0].part[4].value.ofType(CodeableConcept).coding[0] (l34/c12)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Parameters.parameter[0].part[4].value.ofType(CodeableConcept).coding[1] (l34/c12)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Parameters.parameter[0].part[4].value.ofType(CodeableConcept).coding[2] (l34/c12)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Parameters.parameter[0].part[4].value.ofType(CodeableConcept).coding[3] (l34/c12)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Parameters-FindSubjectDxImplicationsOutput.json Show Validation Information (5)

Path

Severity

Message

Parameters.parameter[1].resource/*Observation/variantExample2*/.component[1].value.ofType(CodeableConcept).coding[0] (l195/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Parameters-FindSubjectHaplotypesOutput.json Show Validation Information (5)

Path

Severity

Message

Parameters.parameter[0].part[1].resource/*Observation/GenotypeCYP2D6*/.value.ofType(CodeableConcept).coding[0] (l63/c14)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Parameters.parameter[0].part[1].resource/*Observation/GenotypeCYP2D6*/.value.ofType(CodeableConcept).coding[1] (l63/c14)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Parameters.parameter[0].part[1].resource/*Observation/GenotypeCYP2D6*/.component[0].value.ofType(CodeableConcept).coding[0] (l92/c18)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

Parameters.parameter[1].part[1].resource/*Observation/GenotypeCYP2C19*/.value.ofType(CodeableConcept).coding[0] (l165/c14)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Parameters.parameter[1].part[1].resource/*Observation/GenotypeCYP2C19*/.value.ofType(CodeableConcept).coding[1] (l165/c14)

warning

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

Parameters.parameter[1].part[1].resource/*Observation/GenotypeCYP2C19*/.component[0].value.ofType(CodeableConcept).coding[0] (l194/c18)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Parameters-FindSubjectMolecConseqOutput.json Show Validation Information (11)

Path

Severity

Message

Parameters.parameter[0].resource/*Observation/MC1*/.component[0].value.ofType(CodeableConcept).coding[0] (l82/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Parameters.parameter[0].resource/*Observation/MC1*/.component[1].value.ofType(CodeableConcept).coding[0] (l101/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Parameters.parameter[0].resource/*Observation/MC1*/.component[1].value.ofType(CodeableConcept).coding[1] (l101/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Parameters.parameter[0].resource/*Observation/MC1*/.component[2].value.ofType(CodeableConcept).coding[0] (l125/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Parameters.parameter[1].resource/*Observation/MC2*/.component[1].value.ofType(CodeableConcept).coding[0] (l235/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Parameters.parameter[1].resource/*Observation/MC2*/.component[2].value.ofType(CodeableConcept).coding[0] (l254/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Parameters.parameter[2].resource/*Observation/MC3*/.component[1].value.ofType(CodeableConcept).coding[0] (l364/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Parameters.parameter[2].resource/*Observation/MC3*/.component[2].value.ofType(CodeableConcept).coding[0] (l383/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Parameters.parameter[3].resource/*Observation/MC4*/.component[0].value.ofType(CodeableConcept).coding[0] (l473/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

Parameters.parameter[3].resource/*Observation/MC4*/.component[1].value.ofType(CodeableConcept).coding[0] (l492/c14)

warning

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

Parameters.parameter[0].resource/*Observation/MC1*/.derivedFrom[0].parameter[0].resource/*Observation/variantExampleMC*/.component[1].value.ofType(CodeableConcept).coding[0] (l596/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput.json Show Validation Information (3)

Path

Severity

Message

Parameters.parameter[0].part[2].resource/*Observation/Genotype7*/.value.ofType(CodeableConcept).coding[0].system (l67/c14)

warning

Parameters.parameter[0].part[2].resource/*Observation/Genotype7*/.component[0].value.ofType(CodeableConcept).coding[0].system (l91/c18)

warning

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated (from https://tx.fhir.org/r5) UNKNOWN_CODESYSTEM

Parameters.parameter[0].part[2].resource/*Observation/Genotype7*/.component[0].value.ofType(CodeableConcept).coding[0] (l91/c18)

Path

Severity

Message

Parameters.parameter[1].resource/*Observation/variantExample*/.component[1].value.ofType(CodeableConcept).coding[0] (l194/c14)

warning

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Parameters-FindSubjectVariantsOutput.json Show Validation Information (3)

Path

Severity

Message

Parameters.parameter[1].part[2].resource/*Observation/dv-5a7f781e83514*/.component[1].value.ofType(CodeableConcept).coding[0] (l120/c18)

warning

Message

StructureDefinition.snapshot.element[52] (l1/c89980)

warning

Constraint failed: eld-33: 'If there's more than one bindable type, it's usually an error for there to be a binding (type.where(code in 'code' | 'Coding' | 'CodeableConcept' | 'CodeableReference' | 'uri' | 'string' | 'Quantity').count() > 1 implies binding.empty())' (defined in http://hl7.org/fhir/StructureDefinition/ElementDefinition) http://hl7.org/fhir/StructureDefinition/ElementDefinition#eld-33

fsh-generated/resources/StructureDefinition-genomic-report.json Show Validation Information (1)

Path

Severity

Message

DiagnosticReport.extension (l1/c150903)

information

The extension http://hl7.org/fhir/StructureDefinition/hla-genotyping-results-allele-database|5.2.0 is deprecated with the note: 'This extension has been replaced by the profiles and extensions defined in the "Genomics Reporting Guide" (https://hl7.org/fhir/uv/genomics-reporting/)' MSG_DEPENDS_ON_DEPRECATED_NOTE

DiagnosticReport.extension (l1/c151187)

information

Message

ValueSet.compose.include[0] (l1/c4414)

information

The concepts in the value set include have not been validated because the code system is not known, and no terminology service supports it VALUESET_INC_CS_NO_SUPPORT

ValueSet.where(id = 'condition-inheritance-mode-vs')

error

✓

fsh-generated/resources/ValueSet-knowledge-base-version-vs.json Show Validation Information (1)

✓

fsh-generated/resources/ValueSet-molecular-biomarker-category-vs.json Show Validation Information (1)

✓

fsh-generated/resources/ValueSet-molecular-biomarker-code-vs.json Show Validation Information (1)

Path

Severity

Message

ValueSet.where(id = 'molecular-biomarker-code-vs')

error

Error from https://tx.fhir.org/r5: The code system definition for http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl is a fragment, so this expansion is not permitted unless the expansion parameter "incomplete-ok" has a value of "true" (from server, see log)

fsh-generated/resources/ValueSet-molecular-consequence-vs.json Show Validation Information (1)

Path

Severity

Message

ValueSet.where(id = 'molecular-consequence-vs')

error

An example of DiagnosticImplication<Observation>.derivedFrom() that we slice to only allow our profiles. In this example, we did not define specific Variant instances and just refer to some variants by identifier (rather than a full resource), so ignoring these warnings

INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication% (1 uses)
INFORMATION: Observation/PolyGenicDiagnosticImpExample: Observation.derivedFrom[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/diagnostic-implication% (1 uses)

CG has reviewed these CodeSystems and have decided to keep this in our IG

INFORMATION: CodeSystem/clinvar-evidence-level-custom-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/coded-annotation-types-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/genomic-study-change-type-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (0 uses)
INFORMATION: CodeSystem/genomic-study-data-format-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (0 uses)
INFORMATION: CodeSystem/genomic-study-method-type-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (0 uses)
INFORMATION: CodeSystem/genomic-study-status-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (0 uses)
INFORMATION: CodeSystem/genomic-study-type-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (0 uses)
INFORMATION: CodeSystem/knowledge-base-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/molecular-biomarker-ontology-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/pharmgkb-evidence-level-custom-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)
INFORMATION: CodeSystem/tbd-codes-cs: CodeSystem: Most code systems defined in HL7 IGs will need to move to THO later during the process. Consider giving this code system a THO URL now (See https://confluence.hl7.org/display/TSMG/Terminology+Play+Book, and/or talk to TSMG) (1 uses)

GenomicReport<DiagnosticReport>.result referencing Observation instances. We have defined our report profile to slice .result with our Observation profiles. Slicing is open, this informational message can be ignored

INFORMATION: Bundle/bundle-cgexample-withGrouping: Bundle.entry[0].resource/*DiagnosticReport/report-withGrouping*/.result[4]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource/*DiagnosticReport/Inline-Instance-for-oncologyexamples-r4-withGrouping-15*/.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[14].resource/*DiagnosticReport/Inline-Instance-for-oncologyexamples-r4-withGrouping-15*/.result[6]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[1]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)
INFORMATION: DiagnosticReport/PGxGenomicReportEMERGE-withGrouping: DiagnosticReport.result[2]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/genomic-report% (1 uses)

Observation.component instances that do not match our slices, but is OK (and this is ok since we use open slicing)

INFORMATION: Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[18]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)
INFORMATION: Bundle/bundle-cgexample: Bundle.entry[5].resource/*Observation/discrete-variant*/.component[19]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)
INFORMATION: Observation/variant-with-molec-consequences: Observation.component[9]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant% (1 uses)

Our Observation profiles require a code from the Observation Category value set (LAB), but in some cases require additional codes from other value sets. Since this binding is "Preferred" the resources are still conformant, so we are Suppressing these messages.

None of the codings provided are in the value set 'Observation Category Codes' (http://hl7.org/fhir/ValueSet/observation-category|6.0.0-ballot3), and a coding is recommended to come from this value set (codes = http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/tbd-codes-cs#biomarker-category) (5 uses)
None of the codings provided are in the value set 'Observation Category Codes' (http://hl7.org/fhir/ValueSet/observation-category|6.0.0-ballot3), and a coding is recommended to come from this value set (codes = http://terminology.hl7.org/CodeSystem/v2-0074#GE) (177 uses)

Suppress all references to example CodeSystems

A definition for CodeSystem 'http://example.org/% (11 uses)

THESE SHOULD BE REVIEWED BEFORE PUBLICATION - ADDING THESE OCT 2025 JUST TO KEEP THE QA A LITTLE CLEANER FOR NOW

Constraint failed: eld-30: 'targetProfiles SHOULD be unique (targetProfile.isDistinct())' (defined in http://hl7.org/fhir/StructureDefinition/ElementDefinition) (2 uses)
Constraint failed: eld-31: 'additionalBindings should have a key (key.exists())' (defined in http://hl7.org/fhir/StructureDefinition/ElementDefinition) (Best Practice Recommendation) (17 uses)
Reference to deprecated ValueSet http://hl7.org/fhir/ValueSet/jurisdiction|6.0.0-ballot3 (68 uses)
Reference to experimental CodeSystem http://hl7.org/fhir/CodeSystem/fhirpath-types|6.0.0-ballot3 (208 uses)

The IG Validator returns different warnings on this error: https://github.com/HL7/fhir-ig-publisher/issues/420 - in short, the validator returns the "among choices" profiles in a different order different times, so suppressing by wildcard

Found multiple matching profiles for Task/med-usage-impact-task-pgx-example among choices% (1 uses)
Found multiple matching profiles for Task/usage-1a among choices:% (1 uses)

The mappings in this concept map have been human reviewed and is correct

INFORMATION: ConceptMap/dna-change-type-map: ConceptMap.group[0].source: Source Code System http://loinc.org is only supported on the terminology server, so the source codes are not validated for performance reasons (0 uses)

These URLs have been validated and are apporpriately used in our examples

No definition could be found for URL value 'http://slk-kliniken.de/fhir/namingSystem/tissueID' (1 uses)
No definition could be found for URL value 'https://civicdb.org/evidence/2994/summary' (0 uses)
No definition could be found for URL value 'https://civicdb.org/evidence/7282/summary' (0 uses)
No definition could be found for URL value 'https://civicdb.org/molecular-profiles/2562/summary' (0 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-clopidogrel-and-cyp2c19' (0 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-selective-serotonin-reuptake-inhibitors-and-cyp2d6-and-cyp2c19/' (0 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-tricyclic-antidepressants-and-cyp2d6-and-cyp2c19/' (0 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-voriconazole-and-cyp2c19/' (0 uses)
No definition could be found for URL value 'https://cpicpgx.org/guidelines/guideline-for-warfarin-and-cyp2c9-and-vkorc1/' (0 uses)
No definition could be found for URL value 'https://gl.nmdp.org/imgt-hla/3.23.0/multilocus-unphased-genotype/ex' (1 uses)
No definition could be found for URL value 'https://pubmed.ncbi.nlm.nih.gov/29614695/' (0 uses)
No definition could be found for URL value 'https://pubmed.ncbi.nlm.nih.gov/33927380/' (3 uses)
No definition could be found for URL value 'https://www.cancer.net/cancer-types/lung-cancer-non-small-cell/types-treatment' (0 uses)
No definition could be found for URL value 'https://www.jmdjournal.org/cms/attachment/ee43a71b-81de-4cb3-ac5e-2fb9a7d41491/gr2.jpg' (0 uses)
No definition could be found for URL value 'https://www.ncbi.nlm.nih.gov/clinvar/variation/53685/#clinical-assertions' (0 uses)
No definition could be found for URL value 'https://www.ncbi.nlm.nih.gov/gene/545#:~:text=ATR%20may%20function%20as%20an,radiation%20when%20ATM%20is%20deficient' (0 uses)

These slice messages have been reviewed, and our StructureDefinition apporpriately defines the slices of extension, and examples look valid. Have asked for feedback here: https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/slicing.20in.20Observation.2Ecomponent.2Eextension.20information.20help.3F

INFORMATION: Bundle/bundle-oncologyexamples-r4-withGrouping: Bundle.entry[8].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-withGrouping-9*/.component[3].extension[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication% (1 uses)
INFORMATION: Bundle/bundle-oncologyexamples-r4: Bundle.entry[12].resource/*Observation/Inline-Instance-for-oncologyexamples-r4-14*/.component[0].extension[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication% (1 uses)

These slice messages that have been reviewed. Each of these refer to (via derivedFrom) a Variant, and are a valid Variant instance. They are similar to ones mentioned on https://chat.fhir.org/#narrow/stream/179252-IG-creation/topic/slicing.20in.20Observation.2Ecomponent.2Eextension.20information.20help.3F

INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[0].resource/*Observation/MC1*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[1].resource/*Observation/MC2*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[2].resource/*Observation/MC3*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)
INFORMATION: Parameters/FindSubjectMolecConseqOutput: Parameters.parameter[3].resource/*Observation/MC4*/.derivedFrom[0]: This element does not match any known slice defined in the profile http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/molecular-consequence% (1 uses)

We define several experimental CodeSystems that we use, so OK to suppress this for all IG defined CSs, https://chat.fhir.org/#narrow/channel/179202-terminology/topic/Overuse.20of.20the.20Experimental.20flag, https://confluence.hl7.org/x/LKOZCQ

Reference to experimental CodeSystem% (294 uses)

Errors sorted by type

IG_DEPENDENCY_CLASH_PACKAGEID

fsh-generated/resources/ImplementationGuide-genomics-reporting.json

IG_DEPENDENCY_VERSION_WARNING

fsh-generated/resources/ImplementationGuide-genomics-reporting.json

MSG_DEPENDS_ON_DEPRECATED_NOTE

fsh-generated/resources/StructureDefinition-genomic-report.json

UNKNOWN_CODESYSTEM

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-cgexample.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-cgexample.json

A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-cgexample.json

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-cgexample.json

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.json

A definition for CodeSystem 'http://purl.obolibrary.org/obo/mondo.owl' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.json

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-cgexample-withGrouping.json

A definition for CodeSystem 'http://www.pharmvar.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-oncology-report-example.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Bundle-bundle-sequence-phase-relation-CYP2C19.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-HLA-A-haplotype1.json

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-HLA-A-haplotype2.json

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-ISCN-CMLExample.json

A definition for CodeSystem 'https://iscn.karger.com' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-Pgx-var-1015.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-Pgx-var-1016.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-Pgx-var-1017.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-Pgx-var-1018.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-Pgx-var-1019.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-Pgx-var-1020.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-Pgx-var-1021.json

A definition for CodeSystem 'http://www.sequenceontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-ROS1-Fusion-therapuTrial.json

A definition for CodeSystem 'http://clinicaltrials.gov' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-VariantExample2.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/refseq' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-genotype-hla-a-glstring-r4.json

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

fsh-generated/resources/Observation-obs-idh-ex.json

A definition for CodeSystem 'http://human-phenotype-ontology.org' could not be found, so the code cannot be validated

fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput.json

A definition for CodeSystem 'http://www.genenames.org' could not be found, so the code cannot be validated

UNKNOWN_CODESYSTEM_VERSION_NONE

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-CG-IG-HLA-FullBundle-01.json

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.23' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-cgexample.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/projects/SNP' version '137' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Bundle-bundle-cgexample.json

A definition for CodeSystem 'http://www.ncbi.nlm.nih.gov/clinvar' version '???' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Observation-genotype-hla-a-glstring-r4.json

A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Observation-haplotype-hla-a-1-r4.json

A definition for CodeSystem 'http://www.ebi.ac.uk/ipd/imgt/hla' version '3.31.0' could not be found, so the code cannot be validated. No versions of this code system are known

fsh-generated/resources/Parameters-FindSubjectSpecificHaplotypesOutput.json

A definition for CodeSystem 'http://glstring.org' version '1.0' could not be found, so the code cannot be validated. No versions of this code system are known

VALIDATION_VAL_STATUS_INCONSISTENT_HINT

fsh-generated/resources/ConceptMap-dna-change-type-map.json

The resource status 'draft' and the standards status 'trial-use' may not be consistent and should be reviewed

VALUESET_INC_CS_NO_SUPPORT

fsh-generated/resources/ValueSet-condition-inheritance-mode-vs.json

The concepts in the value set include have not been validated because the code system is not known, and no terminology service supports it